BAC Information

Click to search

BAC

Clone NameB6Ng01-133M22
Chromosome3 (Build37)
Map Location 49,870,818 - 49,872,012
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133M22.bB6Ng01-133M22.g
ACCDH934262DH934263
length1,1671,207
definitionDH934262|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M22, 5' end.DH934263|Mus musculus domesticus DNA, BAC clone: B6Ng01-133M22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtttagtttctaaaaccctggactttgactctgagccaaaat
aacaaggaaaaggggtttaaagaattaaaagaggaaaagcataatttgca
catgcaggtgactgttgaatttattcttgccaaacaaggagtctttagaa
tcatgcatctgtagcctttatgccttttgcaattcttataccccaagtga
tttctcccaagtttacttctaatgcccctgctgactgacaggctctacag
atgcccactgctgaagtacaccatttccaataggtccttatagtgtgtag
cattccacatatggtagattgtcaagatttgaatgcaagaacattcacta
aagagatagacccaataaacaatttagaatataaacatacaaatgcatgt
atttattatattatgaaataaatattatttacttaatcaaagaaaattct
taaaggcttgtttttttatttatactcttatgagtgtgtgcgtgtgtata
catataatagggccagaagaaaatgtctaatcctctgtaaatggagtagt
ggatggctctgagaagctccatgtgacataagtgcttgggactgaactca
agtcctccacaagatgctgaggcatctctatacccagataatacatttcc
atgcatttatacatgtattatttaaacatggaagaatatgtagttcttat
aaaagtagttttcttatatgacatagaaagctgcacggatgcatatactg
tatctctggagtctaagtctacaatcaggaacaagaagtgttggtgctct
tctttgaagattttcaggcatttggtttcactcttattcagcattcaaac
ttccagttgattcaacacaagagagaatgaggtccatctgtattagtgag
gacaatttgccttacttgttataccaattcagtgctgagactcttcgaat
ataaccaaagtatgtttaatcaacatatgagaacctcatgacccatagtt
cacgtacaagcaacatagtgaatttactttttaaaacatgatacatacat
gcatataatatatcatatgcatgctgtgcatctttatgagtaatatgtat
aacagaattgaggtaccatcacttctattgcccgatctttgaacaagaga
ctcttatgaactatgaa
gaattcctcagattcagggaagaaaatatttatttggttttggtttacat
ttccacatcatagtctaatcactgaaggaagtcagggtaggaactcaagc
agagctggaacctggagacaggaattgatgcagaggcaatggaggggtgc
tgcttactggcttactccacctgcttttttatagcacctagtatcaccaa
cccaaggatggcactacccacaatggacaggactctcccatcaatcacta
atttaaaaaatgtcctacagatgggtcttatggagtctttttttctcaat
taaggtcccctacgttcagaaaactgtagtttgtgtcaacttgacaaaac
tagtcagcacaggatctgaactcagggcctcaagtatgctaagaaaacac
tccatcaaccgagctacatatccagccttactcttagagcttttgagtgt
gcttccattctccagaacaactcccttttctatcaaacctattacataag
cttgttctggttcactgtataagatgtatccagtagatgcattggtgagg
aacatgacagatgatgagaaataagtccatagaaataatgtggtttgctc
acttggtgaaatttccagctatctactggtgaggactattttgagctctg
ccctttaaggtgaagggcaagttacttgtatatgatctatccaaccacaa
agagaaagaaacaatatctttgacagctttgaactttgaaagcactgtac
atctcataatatgcttctctgacccgttacttatggctaagagcttaatt
gatgtctgagaacaatgaaacactccacaaaaggtccagccatgatgtca
tttgtcactgttatcacaggatggaacaaatccagtggtgttagaaatgt
taatgacagaccaggaaattatttgaaaccttaacagatctaaaaatgac
atacagcacagatgtagatgctgccaccaaatctgactgcttttaaggtt
tatgttgttttgagaaatctcactgcatggactggttgcctagaacttct
tgtgtataccagctgactacattatcagaagtacttctgcctctcctcct
cataagttgtggagataatgccatttcacatgctgcctcagtcctttgat
attgaaatcctatagaatgccttagctcgctataaggatctaggtgagcc
catttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49870818_49872012
seq2: B6Ng01-133M22.b_48_1214

seq1  GAATTCCAGTTTAGTTTCTAAAACCCTGGACTTTGACTCTGAGCCAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTAGTTTCTAAAACCCTGGACTTTGACTCTGAGCCAAAAT  50

seq1  AACAAGGAAAAGGGGTTTAAAGAATTAAAAGAGGAAAAGCATAATTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAAAAGGGGTTTAAAGAATTAAAAGAGGAAAAGCATAATTTGCA  100

seq1  CATGCAGGTGACTGTTGAATTTATTCTTGCCAAACAAGGAGTCTTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGTGACTGTTGAATTTATTCTTGCCAAACAAGGAGTCTTTAGAA  150

seq1  TCATGCATCTGTAGCCTTTATGCCTTTTGCAATTCTTATACCCCAAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATCTGTAGCCTTTATGCCTTTTGCAATTCTTATACCCCAAGTGA  200

seq1  TTTCTCCCAAGTTTACTTCTAATGCCCCTGCTGACTGACAGGCTCTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCAAGTTTACTTCTAATGCCCCTGCTGACTGACAGGCTCTACAG  250

seq1  ATGCCCACTGCTGAAGTACACCATTTCCAATAGGTCCTTATAGTGTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACTGCTGAAGTACACCATTTCCAATAGGTCCTTATAGTGTGTAG  300

seq1  CATTCCACATATGGTAGATTGTCAAGATTTGAATGCAAGAACATTCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCACATATGGTAGATTGTCAAGATTTGAATGCAAGAACATTCACTA  350

seq1  AAGAGATAGACCCAATAAACAATTTAGAATATAAACATACAAATGCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAGACCCAATAAACAATTTAGAATATAAACATACAAATGCATGT  400

seq1  ATTTATTATATTATGAAATAAATATTATTTACTTAATCAAAGAAAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATATTATGAAATAAATATTATTTACTTAATCAAAGAAAATTCT  450

seq1  TAAAGGCTTGTTTTTTTATTTATACTCTTATGAGTGTGTGCGTGTGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTTGTTTTTTTATTTATACTCTTATGAGTGTGTGCGTGTGTATA  500

seq1  CATATAATAGGGCCAGAAGAAAATGTCTAATCCTCTGTAAATGGAGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATAGGGCCAGAAGAAAATGTCTAATCCTCTGTAAATGGAGTAGT  550

seq1  GGATGGCTCTGAGAAGCTCCATGTGACATAAGTGCTTGGGACTGAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCTCTGAGAAGCTCCATGTGACATAAGTGCTTGGGACTGAACTCA  600

seq1  AGTCCTCCACAAGATGCTGAGGCATCTCTATACCCAGATAATACATTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCCACAAGATGCTGAGGCATCTCTATACCCAGATAATACATTTCC  650

seq1  ATGCATTTATACATGTATTATTTAAACATGGAAGAATATGTAGTTCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTATACATGTATTATTTAAACATGGAAGAATATGTAGTTCTTAT  700

seq1  AAAAGTAGTTTTCTTATATGACATAGAAAGCTGCACGGATGCATATACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGTTTTCTTATATGACATAGAAAGCTGCACGGATGCATATACTG  750

seq1  TATCTCTGGAGTCTAAGTCTACAATCAGGAACAAGAAGTGTTGGTGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGGAGTCTAAGTCTACAATCAGGAACAAGAAGTGTTGGTGCTCT  800

seq1  TCTTTGAAGATTTTCAGGCATTTGGTTTCACTCTTATTCAGCATTCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAGATTTTCAGGCATTTGGTTTCACTCTTATTCAGCATTCAAAC  850

seq1  TTCCAGTTGATTCAACACAAGAGAGAATGAGGTCCATCTGTATTAGTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTGATTCAACACAAGAGAGAATGAGGTCCATCTGTATTAGTGAG  900

seq1  GACAATTTGCCTTACTTGTTATACCAAATTCAGTGCTGAGACTCTTCGAA  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACAATTTGCCTTACTTGTTATACC-AATTCAGTGCTGAGACTCTTCGAA  949

seq1  TATAACCAAAGTAATGTTTAATCAAACATATGAGAACCTCATGACCCAAT  1000
      |||||||||||| |||||||||| ||||||||||||||||||||||| ||
seq2  TATAACCAAAGT-ATGTTTAATC-AACATATGAGAACCTCATGACCC-AT  996

seq1  AAGGTTCACGTACAAAGCAACATAGTGAATTTTACTTTTTAAAAACATTG  1050
      |  |||||||||| ||||||||||||||| |||||||||| |||||| ||
seq2  A--GTTCACGTAC-AAGCAACATAGTGAA-TTTACTTTTT-AAAACA-TG  1040

seq1  ATACATACATGCATATTATATTATATTCATAATTGCATGCTTGTGCATCT  1100
      |||||||||||||||| ||||     |||||  ||||||| |||||||||
seq2  ATACATACATGCATATAATAT----ATCATA--TGCATGC-TGTGCATCT  1083

seq1  ATAATGAAGTAATAATGTATAACCAAGGAAAATTGAAGTACCCATCACTT  1150
       | ||| |||||| |||||||||     | |||||| ||| |||||||||
seq2  -TTATG-AGTAAT-ATGTATAAC-----AGAATTGAGGTA-CCATCACTT  1124

seq1  CATATGCCGGATCTTTGGACCAAGAGACTCTTTATGAGCTATGAA  1195
      |   |||| ||||||| || |||||||||| |||||| |||||||
seq2  CTATTGCCCGATCTTT-GAACAAGAGACTC-TTATGAACTATGAA  1167