BAC Information

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BAC

Clone NameB6Ng01-134B07
Chromosome3 (Build37)
Map Location 115,767,105 - 115,912,039
singlet/doubletdoublet
Overlap geneVcam1
Upstream geneOlfm3, EG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2
Downstream geneGpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134B07.bB6Ng01-134B07.g
ACCDH934467DH934468
length1,048751
definitionDH934467|Mus musculus domesticus DNA, BAC clone: B6Ng01-134B07, 5' end.DH934468|Mus musculus domesticus DNA, BAC clone: B6Ng01-134B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,767,105 - 115,768,175)(115,911,289 - 115,912,039)
sequence
gaattcaataagattataagataacaggccaatatacatacaattattgt
atatctatatctgatcaaaaagctcttggaagagccgggcatggtggtgc
acgcctttaatcccagcactcgggaggcagaggcaggtggatttctgagt
tcaaggccagcctggtctacagagtgagtttcaggacagctagggctata
cagagaaaccctgtcttgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaccctcttggaaattcctgctaaccttatcacaacaaaag
aaaaagttaagcggaacactgcattaacatcatttgaaaataccctcctt
cgttctacacaggcttcttcagggtaatcagaggtgaatgtgatctaaat
acattatacagatatgtgtgaagcttttctaagtaaatctgttattgtgt
gcaattgctatacactaataaaacagttttcaaatggaaaaaaaaaccag
gtacttcattttttatcagctcacttttgcttctcatgtgagatacaatt
tcattttatcctcagcctgttctaaatatgcccatctcaaggacacaagt
gaaatcttagccactaatctcaaagatacctctgctctgtgacatcttct
cagggttcatcctccagagattttcttgcttttgtgtctatgacaacatt
atctgctagttctcccatgagctctctgctcacacaacttaaatacttcc
cttaaaaactctgttatctaagtctctaaatcattggtcttcctatgttt
gaacctcatttcttgcagctccataacctttgaaattctaaagaaatgaa
gggtacattttcataaaagttctaaaaaagtaagagttgagaactttgaa
ccatccttaacggtttatctagtgagtatttataaaagatacattcatga
atactattatgtctcatcaatatagtaacgtctcagtgtagtttaattca
tactaaatagatgttcttattttgtttcatactatttcccatatctac
gaattcaagagagaggcccaaaggggcttggtggtagagataagaatccc
accgaatgctaaacaagagttttcctgggaaatctgttgctggctggatt
tctttaaagcatttcttccagggaaagtagcattaagtactagattaact
gaatgatgaccggaacctgctagtaagcagccttcagcaaacaaacaaac
aaacaaacaaacagataaacaaaccaaaatacaataaataagccataaca
acagaatcaaagcatttgcctctacaacaaagtgagcccgggaagaggtc
tagatgttctccattgatgaaatatggtgctttagaatataagtttgatc
tagatacataatagaatataataggatataaatattatacatgtaattga
atataaatctgatctagtagaagataagtcccagagaagaacaaagggca
aggtttaaaatgtagcagagactatctgcgcttggcagtttgttttgaaa
cattgtcccttcccggcatttttctcttgacttggagttacaatttgtca
tcagtgggactgaaccagggcttacagtgcagcgcagcagcagagcactt
ggttaggaagttcaggactccgagctcaattcccagcgctgtcagacaac
taacataatggtaggattgaacaaaatatttaaccatagttctgccatca
tttgtgtcatccattgcccctcccccccccaaatggggtggggtggggtg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_115767105_115768175
seq2: B6Ng01-134B07.b_49_1096

seq1  GAATTCAATAAGATTATAAGATAACAGGCCAATATACATACAATTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAGATTATAAGATAACAGGCCAATATACATACAATTATTGT  50

seq1  ATATCTATATCTGATCAAAAAGCTCTTGGAAGAGCCGGGCATGGTGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATATCTGATCAAAAAGCTCTTGGAAGAGCCGGGCATGGTGGTGC  100

seq1  ACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGT  150

seq1  TCAAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCTAGGGCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCTAGGGCTATA  200

seq1  CAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAA  250

seq1  AAAAAAAAAAAACCTCTTGGAAATTCCTGCTAACCTTATCACAACAGAAG  300
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  AAAAAAAAAAACCCTCTTGGAAATTCCTGCTAACCTTATCACAACAAAAG  300

seq1  AAAAAGTTAAGCGGAACACTGCATTAACATCATTTGAAAATACCCTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTAAGCGGAACACTGCATTAACATCATTTGAAAATACCCTCCTT  350

seq1  CGTTCTACACAGGCTTCTTCAGGGTAATCAGAGGTGAATGTGATCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTACACAGGCTTCTTCAGGGTAATCAGAGGTGAATGTGATCTAAAT  400

seq1  ACATTATACAGATATGTGTGAAGCTTTTCTAAGTAAATCTGTTATTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATACAGATATGTGTGAAGCTTTTCTAAGTAAATCTGTTATTGTGT  450

seq1  GCAATTGCTATACACTAATAAAACAGTTTTCAAATGGAAAAAAAAACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGCTATACACTAATAAAACAGTTTTCAAATGGAAAAAAAAACCAG  500

seq1  GTACTTCATTTTTTATCAGCTCACTTTTGCTTCTCATGTGAGATACAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCATTTTTTATCAGCTCACTTTTGCTTCTCATGTGAGATACAATT  550

seq1  TCATTTTATCCTCAGCCTGTTCTAAATATGCCCATCTCAAGGACACAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATCCTCAGCCTGTTCTAAATATGCCCATCTCAAGGACACAAGT  600

seq1  GAAATCTTAGCCACTAATCTCAAAGATACCTCTGCTCTGTGACATCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTAGCCACTAATCTCAAAGATACCTCTGCTCTGTGACATCTTCT  650

seq1  CAGGGTTCATCCTCCAGAGATTTTCTTGCTTTTGTGTCTATGACAACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCATCCTCCAGAGATTTTCTTGCTTTTGTGTCTATGACAACATT  700

seq1  ATCTGCTAGTTCTCCCATGAGCTCTCTGCTCACACAACTTAAATACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTAGTTCTCCCATGAGCTCTCTGCTCACACAACTTAAATACTTCC  750

seq1  CTTAAAAACTCTGTTATCTAAGTCTCTAAATCATTGGTCTTCCTATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAACTCTGTTATCTAAGTCTCTAAATCATTGGTCTTCCTATGTTT  800

seq1  GAACCTCATTTCTTGCAGCTCCATAACCTTTGAAATTCTAAAGAAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCATTTCTTGCAGCTCCATAACCTTTGAAATTCTAAAGAAATGAA  850

seq1  GGGTACATTTTCATAAAAGTTCTAAAAAAGTAAGAGTTGAGAAACTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGTACATTTTCATAAAAGTTCTAAAAAAGTAAGAGTTGAG-AACTTTGA  899

seq1  ACCATCCTTAACGGTTTATCTAGTGAGTTAATTTATTAAAAAGATACAAT  950
      ||||||||||||||||||||||||||||  ||||||  ||||||||| ||
seq2  ACCATCCTTAACGGTTTATCTAGTGAGT--ATTTAT--AAAAGATAC-AT  944

seq1  TCATGAATACTATTATGTCTTCATCCAAATATAGTACACGTCTCCAGTGT  1000
      ||||||||||||||||||| |||||  ||||||||| |||||| ||||||
seq2  TCATGAATACTATTATGTC-TCATC--AATATAGTA-ACGTCT-CAGTGT  989

seq1  AGTTTTAAATATCATACTAAAATTAAGATGTTTCCTTATTTTGTTATCCA  1050
      |||||  ||| ||||||||||    |||||||  ||||||||||| ||  
seq2  AGTTT--AAT-TCATACTAAA---TAGATGTT--CTTATTTTGTT-TC--  1028

seq1  TAAACTATTTCACATATCTAC  1071
       | |||||||| |||||||||
seq2  -ATACTATTTCCCATATCTAC  1048

seq1: chr3_115911289_115912039
seq2: B6Ng01-134B07.g_70_820 (reverse)

seq1  CCACCCCACCCCACCCCATTTGGGGGGGGGAGGGGCAATGGATGACACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCCACCCCATTTGGGGGGGGGAGGGGCAATGGATGACACAA  50

seq1  ATGATGGCAGAACTATGGTTAAATATTTTGTTCAATCCTACCATTATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCAGAACTATGGTTAAATATTTTGTTCAATCCTACCATTATGTT  100

seq1  AGTTGTCTGACAGCGCTGGGAATTGAGCTCGGAGTCCTGAACTTCCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTGACAGCGCTGGGAATTGAGCTCGGAGTCCTGAACTTCCTAAC  150

seq1  CAAGTGCTCTGCTGCTGCGCTGCACTGTAAGCCCTGGTTCAGTCCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTCTGCTGCTGCGCTGCACTGTAAGCCCTGGTTCAGTCCCACTG  200

seq1  ATGACAAATTGTAACTCCAAGTCAAGAGAAAAATGCCGGGAAGGGACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAATTGTAACTCCAAGTCAAGAGAAAAATGCCGGGAAGGGACAAT  250

seq1  GTTTCAAAACAAACTGCCAAGCGCAGATAGTCTCTGCTACATTTTAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAACAAACTGCCAAGCGCAGATAGTCTCTGCTACATTTTAAACC  300

seq1  TTGCCCTTTGTTCTTCTCTGGGACTTATCTTCTACTAGATCAGATTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTTTGTTCTTCTCTGGGACTTATCTTCTACTAGATCAGATTTATA  350

seq1  TTCAATTACATGTATAATATTTATATCCTATTATATTCTATTATGTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTACATGTATAATATTTATATCCTATTATATTCTATTATGTATCT  400

seq1  AGATCAAACTTATATTCTAAAGCACCATATTTCATCAATGGAGAACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAACTTATATTCTAAAGCACCATATTTCATCAATGGAGAACATCT  450

seq1  AGACCTCTTCCCGGGCTCACTTTGTTGTAGAGGCAAATGCTTTGATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTTCCCGGGCTCACTTTGTTGTAGAGGCAAATGCTTTGATTCTG  500

seq1  TTGTTATGGCTTATTTATTGTATTTTGGTTTGTTTATCTGTTTGTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATGGCTTATTTATTGTATTTTGGTTTGTTTATCTGTTTGTTTGTT  550

seq1  TGTTTGTTTGTTTGCTGAAGGCTGCTTACTAGCAGGTTCCGGTCATCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGCTGAAGGCTGCTTACTAGCAGGTTCCGGTCATCATT  600

seq1  CAGTTAATCTAGTACTTAATGCTACTTTCCCTGGAAGAAATGCTTTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATCTAGTACTTAATGCTACTTTCCCTGGAAGAAATGCTTTAAAG  650

seq1  AAATCCAGCCAGCAACAGATTTCCCAGGAAAACTCTTGTTTAGCATTCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGCCAGCAACAGATTTCCCAGGAAAACTCTTGTTTAGCATTCGG  700

seq1  TGGGATTCTTATCTCTACCACCAAGCCCCTTTGGGCCTCTCTCTTGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCTTATCTCTACCACCAAGCCCCTTTGGGCCTCTCTCTTGAATT  750

seq1  C  751
      |
seq2  C  751