BAC Information

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BAC

Clone NameB6Ng01-134B20
Chromosome12 (Build37)3 (Build37)
Map Location 57,809,340 - 57,810,29826,644,449 - 26,645,099
singlet/doubletsingletsinglet
Overlap genePax9
Upstream geneGarnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9
Downstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134B20.bB6Ng01-134B20.g
ACCDH934492DH934493
length9621,030
definitionDH934492|Mus musculus domesticus DNA, BAC clone: B6Ng01-134B20, 5' end.DH934493|Mus musculus domesticus DNA, BAC clone: B6Ng01-134B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,809,340 - 57,810,298)(26,644,449 - 26,645,099)
sequence
gaattctgctcatcactgcactgcctctgtcaccttccccggacttgctg
cttttgccttttttgaaggaactttgttacagacctgtctcctgtagctt
tcttttcctgaatagaaaggcagaatgtgtggcctgctgtgcttgaaact
caaagcggacagattttctgttaagtgaggcacgggccatgtttcaagat
gtcgtgttgacaaccccacttggacaaggacattgcaaacgctggatctt
tctcccaaggggttttttgttgttttggtttcggttttttgcttttggac
atttttttttcccaatcctaaaggaaattttctcctcccctccgagtgaa
tatgtgccgttttgaattctaaattttgcgtttgcaaagaccagggtttt
ggttttttttttttgtttgtggaatgtggcttccttttctaaagcaatat
gaactgttttctttccatgacttttatgtaaagcccttgtttgcaaccca
tatgcatgtgtgagtggctggttcacttgtgtggaaacctacgcattact
ggcgaccacttaatacttgtactctacactactatcaacggctgcgaaaa
tgacctgatgactgagcgctctctggcatggatgctctatacatgttttc
agagcatcttttctttcctcccacattctactctgcttaaagataaagag
taatcttgtttcctggtaatgacatgaccagactaacatgtaacatattt
cctaaagaaaaagtatataaatgcaggaattgtattagaaaacgtgattt
aatccacagagctgagtaaacccgacacattctagatgctttgtccaatt
aagttaggacataaatgatgcttttatcttgtatactcatgacattgtat
acacaaccatgcacccctcaatgggctgtagcccttaacgctccatctca
gaatattcttga
gaattccttatttttcttgcaactagtttggacatgctatgtagacaaat
gaatttagaaattgaaaccacttgaagaaagcaaaagagttttgtgactt
gtataggatagcatttcctaaccaaaattgctccaaatattccaaggcag
gacgttaaatcctcaagatgaaaacccaatgtactccctgtacatggctg
taggtcccaaacctataaacgcctgagcttttgtctgtgtgttctggttc
acacctggaaactccaaaacgtaggaggagttgagtttctcgactatctg
acctaatgccctgatattgcaatgacctgtctaagaatggaaggaagggg
aggaacaaaatgagaattaactaagggatgtagaaaatcattgcttggag
tcacctacaataaaacaacactgaaagaaagcacacagatccatttgcaa
ggacaagtttggagcattcgttatatggaatgccacagttccaggagact
aagttaccataaactcttctccttggggctgtgtccaggtttctaggcct
gtcatgtgagtcactactagagtgggtgtagcaggctggtatgtactgga
atttttctctggaattttaaaacccaagttcagctattacttcactaatt
cctacttccctggtataaactaattaattaatttatactgaagttttaga
aaacctatttttcagttctgctgcaacacaactataaaatagcgctagat
attccattctaagatcctctttcactacattccttccctgtcttacccct
ggagccctactcctcctctggggtcatcacatgaataagtgggacagcca
ggcaatgtaggcatgtagctatattatataaaaggtaggggttaggggga
aactattattctgctatgtagacatgttgtagaacaccctctaacattta
taggcctactagaagattaatgcttccatcacctttggtagaaagctttg
ttggacatggggcacattaacgtaagattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57809340_57810298
seq2: B6Ng01-134B20.b_43_993 (reverse)

seq1  CTGAGATGGAGCGCTAAGGGATACAGCCCATTGAGGGACTGCATGGTTGG  50
      ||||||||||||| |||||| ||||||||||||||||  ||||||||| |
seq2  CTGAGATGGAGCGTTAAGGGCTACAGCCCATTGAGGG-GTGCATGGTT-G  48

seq1  TGTATACAATGTCCTGAGTATACAAAATAAAAGCATCATTTATGTCCTAA  100
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TGTATACAATGTCATGAGTATACAAGATAAAAGCATCATTTATGTCCTAA  98

seq1  CTTAATTGGACAAAGCATCTAAAATGTGTCTGGTTTACTCAGCTCTGTGG  150
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CTTAATTGGACAAAGCATCTAGAATGTGTCGGGTTTACTCAGCTCTGTGG  148

seq1  ATTAAATCACGTTTTCTAATACAATTCCTGCATTTATATTACTTTTTCTT  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTAAATCACGTTTTCTAATACAATTCCTGCATTTATA-TACTTTTTCTT  197

seq1  TAGGAAATATGTTGACATGTTAGTCTGGTCATGTCATTACCAGGAAACAA  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATATGTT-ACATGTTAGTCTGGTCATGTCATTACCAGGAAACAA  246

seq1  GATTTACTCTTTATCTTTAAACAGAGTAGAAACTGGGAGGAAAGAAAAGA  300
      || ||||||||||||||||| ||||||||||  |||||||||||||||||
seq2  GA-TTACTCTTTATCTTTAAGCAGAGTAGAATGTGGGAGGAAAGAAAAGA  295

seq1  ACCACTTGAAAAAGGGTGGGGAGCATCCATGCCAGAGAGGGATTAGACAT  350
        | | ||||||   ||   ||||||||||||||||||| | | || |||
seq2  TGCTC-TGAAAACATGTATAGAGCATCCATGCCAGAGAGCGCTCAGTCAT  344

seq1  CAGGGTGTTTTTGGTGTTGTTAATAGTAACGATACCAACAATGATTTATT  400
      ||||   |||| |  |  ||| ||||||  |      ||||  ||| | |
seq2  CAGGTCATTTTCGCAGCCGTTGATAGTAGTGTAGAGTACAAGTATTAAGT  394

seq1  GGACGCCAGGAAAGCACTGGTTTCCAAGCAAGTCTGCCTGCCA-GAGCTG  449
      || |||||| || ||   ||||||||  |||||   || ||||    |  
seq2  GGTCGCCAGTAATGCGTAGGTTTCCACACAAGTGAACCAGCCACTCACAC  444

seq1  CTGCATCTTGTTTGCAAACAAAGATTTCACATTAAACTCCTTTAAAGAGA  499
       ||||| | | |||||||||| |  || |||| ||| || |  ||||| |
seq2  ATGCATATGGGTTGCAAACAAGGGCTTTACATAAAAGTCATGGAAAGAAA  494

seq1  TTTGTTCATATGGCTTTAAAAAA--AAACAAAAAAACAAACAAACAAAAA  547
         |||||||| |||||| ||||  || | | |   |  |||||||||||
seq2  ACAGTTCATATTGCTTTAGAAAAGGAAGCCACATTCC--ACAAACAAAAA  542

seq1  AAAAAAACCAAAACCCTGGACTTTGCAAATGCAAAATTTCCAATTCAAAA  597
      ||||||||||||||||||| ||||||||| |||||||||  |||||||||
seq2  AAAAAAACCAAAACCCTGGTCTTTGCAAACGCAAAATTTAGAATTCAAAA  592

seq1  CTGCACATATTCATTCATATTTGTGGAGAAAATTTCCTTTCTGATTGTGA  647
      | ||||||||||| ||  |   | ||||||||||||||||  ||||| ||
seq2  CGGCACATATTCACTCGGAGGGGAGGAGAAAATTTCCTTTAGGATTGGGA  642

seq1  AAAAAAAATCTCCAAACTTAAAAAACCAAAACCAAAACAACAAAAAAACC  697
      ||||||||| ||||||   |||||||| ||||||||||||||||||| ||
seq2  AAAAAAAATGTCCAAAAGCAAAAAACCGAAACCAAAACAACAAAAAACCC  692

seq1  CTTACTAGAAAAATCCCGAGTTTACAATGTCCTTGTCCAAGTGGCGTTTT  747
      |||   ||||| |||| | |||| |||||||||||||||||||| ||| |
seq2  CTTGGGAGAAAGATCCAGCGTTTGCAATGTCCTTGTCCAAGTGGGGTTGT  742

seq1  CAACACGATATCTTGAAACATGGCCCGTGCTTTATTTAACAGAAAATCTG  797
      |||||||| ||||||||||||||||||||| | | |||||||||||||||
seq2  CAACACGACATCTTGAAACATGGCCCGTGCCTCACTTAACAGAAAATCTG  792

seq1  TCCGTTTTGAGTTTCTAACACAGCAGGCCACACTTTCTGCCTTTCTCTCC  847
      |||| |||||||||| | ||||||||||||||| |||||||||||| | |
seq2  TCCGCTTTGAGTTTCAAGCACAGCAGGCCACACATTCTGCCTTTCTATTC  842

seq1  TGGAAATGAAAGCTACAGGAGACAGGTCTGTAACAAAGCTCCAACAAAAA  897
       ||||| ||||||||||||||||||||||||||||||| |||  ||||||
seq2  AGGAAAAGAAAGCTACAGGAGACAGGTCTGTAACAAAGTTCCTTCAAAAA  892

seq1  AGGCAAAAGTTAGCAAGTGCCGGGGAAGGTTGACAGAGGCAGTGCAGTGC  947
      |||||||||  ||||||| |||||||||| ||||||||||||||||||| 
seq2  AGGCAAAAG-CAGCAAGT-CCGGGGAAGG-TGACAGAGGCAGTGCAGTGA  939

seq1  TGAGCAGAATTC  959
      ||||||||||||
seq2  TGAGCAGAATTC  951

seq1: chr3_26644449_26645099
seq2: B6Ng01-134B20.g_452_1094

seq1  TCATTGCTTGGAGTCACCTACAATAAAACAACACTGAAAGAAAGCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTTGGAGTCACCTACAATAAAACAACACTGAAAGAAAGCACACA  50

seq1  GATCCATTTGCAAGGACAAGTTTGGAGCATTCGTTATATGGAATGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTTGCAAGGACAAGTTTGGAGCATTCGTTATATGGAATGCCACA  100

seq1  GTTCCAGGAGACTAAGTTACCATAAACTCTTCTCCTTGGGGCTGTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGAGACTAAGTTACCATAAACTCTTCTCCTTGGGGCTGTGTCCA  150

seq1  GGTTTCTAGGCCTGTCATGTGAGTCACTACTAGAGTGGGTGTAGCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTAGGCCTGTCATGTGAGTCACTACTAGAGTGGGTGTAGCAGGCT  200

seq1  GGTATGTACTGGAATTTTTCTCTGGAATTTTAAAACCCAAGTTCAGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTACTGGAATTTTTCTCTGGAATTTTAAAACCCAAGTTCAGCTAT  250

seq1  TACTTCACTAATTCCTACTTCCCTGGTATAAACTAATTAATTAATTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACTAATTCCTACTTCCCTGGTATAAACTAATTAATTAATTTATA  300

seq1  CTGAAGTTTTAGAAAACCTATTTTTCAGTTCTGCTGCAACACAACTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTTTAGAAAACCTATTTTTCAGTTCTGCTGCAACACAACTATAA  350

seq1  AATAGCGCTAGATATTCCATTCTAAGATCCTCTTTCACTACATTCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCGCTAGATATTCCATTCTAAGATCCTCTTTCACTACATTCCTTCC  400

seq1  CTGTCTTACCCCTGGAGCCCTACTCCTCCTCTGGGGTCATCACATGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTACCCCTGGAGCCCTACTCCTCCTCTGGGGTCATCACATGAATA  450

seq1  AGTGGGACAGCCAGGCAATGTAGGCATGTAGCTATATTATATAAAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGACAGCCAGGCAATGTAGGCATGTAGCTATATTATATAAAAGGTA  500

seq1  GGGGTTAGGGGGAAACTATTATTCTGCTATGTAGACATGTTTGTAGAACA  550
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGGTTAGGGGGAAACTATTATTCTGCTATGTAGACATG-TTGTAGAACA  549

seq1  CACCTCTAAACATTTATAGGCCTACTTAGAGATTAATGCTTCAGTCACCT  600
      | ||||| ||||||||||||||||||   |||||||||||||  ||||||
seq2  C-CCTCT-AACATTTATAGGCCTACTAGAAGATTAATGCTTCCATCACCT  597

seq1  TTGGTCAGAGAAGCTTTGTTGGACAGTGGGCAGCAGTTAACGTAAAGATT  650
      ||||| ||| |||||||||||||||  ||||| || ||||||| ||||||
seq2  TTGGT-AGA-AAGCTTTGTTGGACATGGGGCA-CA-TTAACGT-AAGATT  642

seq1  C  651
      |
seq2  C  643