BAC Information

Click to search

BAC

Clone NameB6Ng01-134C01
Chromosome3 (Build37)7 (Build37)
Map Location 41,059,224 - 41,059,73710,331,678 - 10,332,816
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134C01.bB6Ng01-134C01.g
ACCDH934502DH934503
length9871,126
definitionDH934502|Mus musculus domesticus DNA, BAC clone: B6Ng01-134C01, 5' end.DH934503|Mus musculus domesticus DNA, BAC clone: B6Ng01-134C01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(10,331,678 - 10,332,816)
sequence
gaattctttgtttagatctgagccccatttttaatgcggttatttgattt
tctggagtccaccctcttgatttctttatatatatattggataatagtcc
cctaactgatttaggacaggtaaagttcctttcccaatctgttggtagcc
tttttgtcttattgacggtgtcttttgccttgtagaagtttgtagtttca
tgaggtcccatttctcaattctcgatcatatagcacaagccattgctgtt
ctattcaggaatttttcctctgtgcccttatcttcgaggcttttccccac
ttaatcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatagattcgc
attcttctaaatgttaacaaccagttgtgccagcactatttgttgaaaag
ctgtctttcttccactcgatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttttgggtcttcaattctattccattttt
ctacttgtctgtcactataccagtaccatgcatttttatcacaattgctc
tgtagtaaagctttaggttaggcatgctgattccaccagaggttctttta
tccttgtgaagagtttttgctatcgtaggttttttgttatttcagatgaa
tttgcagattgctctttttaattcgttgaagaattgagatggaattttaa
tggggattgcattgaatctgtagattgcttttggcaagaaagccattttt
acaatgttgatcctgccaatccatgagcattggagatctttccatcttct
cagagattctttaatttctttcttcagagacttgaagttcttatcataca
gattattcactttcatagttaaatacacgccagatattttttttattatt
tgtgactatttagaaggagttgttgccctaatttctt
gaattcatcattttgtgtagaaaaatgagatccaagacacacagggttac
acatggaaaccatctaccaaatcatataatcaattagaaacacagactaa
ctaaataatcagcaaagatgaaatcagaatatattttctgatttccagta
ggagcacacacataacaaaatactgcctattttttcagctgttcttcaag
ctattggccaatagtctaaggaggaaatattccttttctgctgtcaaata
caaatatattatatccaacactggaaatcagccaggggcccctgtggatg
aattgggaatagttgcaagaagcagaggaggaggacaacccatagaaaca
caagcagtctcatcaaacctggacaagcaagatctctcagacattgagcc
tctaaccagagatcatacactagctgatgtgaagcccccaacaaatatgc
agcataagactgcctggtctagcatcagtgggagagacacacctaacccc
agagagacttaagtccccagggattgggaagggctgggcgttggggaggt
agagatatcatcttggagatgggggaagagtttttagatgaggaagtgtc
agggggcaaaccaggagggggataaccactagactgtaaaaaaatattga
gtaataataaataaaaaatgaaatgaaataagcttgtagctatgtcaaca
tgctattcatattgtagttatggaagggataggtaaaactactgacattt
gcatgaacctaatttctttcagagatttccctctatgtgcagttctgatt
gaggtcctggcctcagaaaattctggaaaacagaatgagagcaggatgct
ttaattatgctgctttctagaaaacaacattttcaaaggacatttgagtg
tttgcggctacactaaatatttcacattatcaattctcttcccataaagg
gaaccaatgggtctaaatgcattaccaaaacaccactttccctcagttag
tctcatggaaatatgatcataagcactgtccctttaggaaccattctcat
taacattcacattgactatggaattcggaagatggacattgtttcaagaa
gattttatatctcacatcgacagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-134C01.b_48_561 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCGA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||| ||||||||| |||||||||||| ||||||||||||||||||||
seq2  GTGGAAGAAAGACAGC-TTTTCAACAAATAGTGCTGGCACAACTGGTTGT  99

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      || ||| |||||||||||||||  ||||| ||||||||||||||||||||
seq2  TAACATTTAGAAGAATGCGAATCTATCCATTCCTATCTCCTTGTACTAAG  149

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  GTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAA  199

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      ||||||||||||  |||||||||||||||| ||||||| || ||||| ||
seq2  ACTTATAGAGGATTAAGTGGGGAAAAGCCTCGAAGATAAGGGCACAGAGG  249

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||||||||||| ||||||||||||||||||||||| || ||| |||||| 
seq2  AAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTATATGATCGAGAATT  299

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      || |||||||||||||||||||| |||| ||||| |||||||||||||||
seq2  GAGAAATGGGACCTCATGAAACTACAAA-CTTCTACAAGGCAAAAGACAC  348

seq1  CGTCAATAAGACAAAAAGGC-ACCAACAGATTGGGAAAGGATCTTTACCT  399
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  CGTCAATAAGACAAAAAGGCTACCAACAGATTGGGAAAGGAACTTTACCT  398

seq1  ATCCTAAATCAGATAGGGGACTAATATCCA--ATATATATCAAGAACTCA  447
       ||||||||||| |||||||||| ||||||  |||||||| ||||| |||
seq2  GTCCTAAATCAGTTAGGGGACTATTATCCAATATATATATAAAGAAATCA  448

seq1  AGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  497
      ||| |||||| ||||||||||||||||||| |||| ||||||||||||||
seq2  AGAGGGTGGACTCCAGAAAATCAAATAACCGCATT-AAAAATGGGGCTCA  497

seq1  GAGCTAAACAAAGAATT  514
      || ||||||||||||||
seq2  GATCTAAACAAAGAATT  514

seq1: chr7_10331678_10332816
seq2: B6Ng01-134C01.g_66_1190 (reverse)

seq1  TACTGTAG-TGTGA-ATATCAAATCTTTCTTTGAAACAATG-CCATCTTC  47
      |||||| | ||||| |||| |||||||   ||||||||||| ||||||||
seq2  TACTGTCGATGTGAGATATAAAATCTT--CTTGAAACAATGTCCATCTTC  48

seq1  CACGAATTTTCAATAAGTAAAATGTGAATGTTAATGAAGAATGTGTTCCT  97
        ||||  ||| || |||  |||||||||||||||| |||||| ||||| 
seq2  --CGAA--TTCCAT-AGT-CAATGTGAATGTTAATG-AGAATG-GTTCC-  89

seq1  TAAAGGGACACTGCTAATGATCATATTTCCATGAAGACTGACTGAGGG-A  146
      |||||||||| |||| ||||||||||||||||| ||||| |||||||| |
seq2  TAAAGGGACAGTGCTTATGATCATATTTCCATG-AGACTAACTGAGGGAA  138

seq1  AGTGGTTGTTTTTGGTAATGCATTTTAGACCCATTTGGTTCCCTTTATGG  196
      ||||||   ||||||||||||| |||||||||| ||||||||||||||||
seq2  AGTGGT--GTTTTGGTAATGCA-TTTAGACCCA-TTGGTTCCCTTTATGG  184

seq1  GAAGAGAATTGATAAATGTGAAATATTTAGTGTAGCCGCAAACACTCAAT  246
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  GAAGAGAATTGAT-AATGTGAAATATTTAGTGTAGCCGCAAACACTCAAA  233

seq1  TGTCCTTTTGAAAATGTTGTTTTCTAGAAAGCAGCATAATTAAAGCATCT  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTCC-TTTGAAAATGTTGTTTTCTAGAAAGCAGCATAATTAAAGCATCC  282

seq1  GGCTCTCATTCTGTTTTCCAGAATTTTCTGAGGCCAGGACCTCAATCAGA  346
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCATTCTGTTTTCCAGAATTTTCTGAGGCCAGGACCTCAATCAGA  332

seq1  ACTGCACATAGAGGGAAATCTCTGAAAGAAATTAGGTTCATGCAAATGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACATAGAGGGAAATCTCTGAAAGAAATTAGGTTCATGCAAATGTC  382

seq1  AGTAGTTTTACCTATCCCTTCCATAACTACAATATGAATAGCATGTTGCC  446
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTAGTTTTACCTATCCCTTCCATAACTACAATATGAATAGCATGTTGAC  432

seq1  ATAGCTACAAGCTTATTTCATTTCATTTTTTATTTATTATTACTCAATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTACAAGCTTATTTCATTTCATTTTTTATTTATTATTACTCAATAT  482

seq1  TTTTTTACAGTCTAGTGGTTATCCCCCTCCTGGTTTGCCCCCTGACACTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACAGTCTAGTGGTTATCCCCCTCCTGGTTTGCCCCCTGACACTT  532

seq1  CCTCATCTAAAAACTCTTCCCCCATCTCCAAGATGATATCTCTACCTCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTAAAAACTCTTCCCCCATCTCCAAGATGATATCTCTACCTCCC  582

seq1  CAACGCCCAGCCCTTCCCAATCCCTGGGGACTTAAGTCTCTCTGGGGTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCCCAGCCCTTCCCAATCCCTGGGGACTTAAGTCTCTCTGGGGTTA  632

seq1  GGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTCTCTCCCACTGATGCTAGACCAGGCAGTCTTATGCTGCATATT  682

seq1  TGTTGGGGGCTTCACATCAGCTAGTGTATGATCTCTGGTTAGAGGCTCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGGCTTCACATCAGCTAGTGTATGATCTCTGGTTAGAGGCTCAA  732

seq1  TGTCTGAGAGATCTTGCTTGTCCAGGTTTGATGAGACTGCTTGTGTTTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGAGATCTTGCTTGTCCAGGTTTGATGAGACTGCTTGTGTTTCT  782

seq1  ATGGGTTGTCCTCCTCCTCTGCTTCTTGCAACTATTCCCAATTCATCCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGTCCTCCTCCTCTGCTTCTTGCAACTATTCCCAATTCATCCAC  832

seq1  AGGGGCCCCTGGCTGATTTCCAGTGTTGGATATAATATATTTGTATTTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCCCTGGCTGATTTCCAGTGTTGGATATAATATATTTGTATTTGA  882

seq1  CAGCAGAAAAGGAATATTTCCTCCTTAGACTATTGGCCAATAGCTTGAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAAAGGAATATTTCCTCCTTAGACTATTGGCCAATAGCTTGAAG  932

seq1  AACAGCTGAAAAAATAGGCAGTATTTTGTTATGTGTGTGCTCCTACTGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGAAAAAATAGGCAGTATTTTGTTATGTGTGTGCTCCTACTGGA  982

seq1  AATCAGAAAATATATTCTGATTTCATCTTTGCTGATTATTTAGTTAGTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAAATATATTCTGATTTCATCTTTGCTGATTATTTAGTTAGTCT  1032

seq1  GTGTTTCTAATTGATTATATGATTTGGTAGATGGTTTCCATGTGTAACCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTAATTGATTATATGATTTGGTAGATGGTTTCCATGTGTAACCC  1082

seq1  TGTGTGTCTTGGATCTCATTTTTCTACACAAAATGATGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTTGGATCTCATTTTTCTACACAAAATGATGAATTC  1125