BAC Information

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BAC

Clone NameB6Ng01-134G21
Chromosome3 (Build37)
Map Location 81,264,041 - 81,419,950
singlet/doubletdoublet
Overlap geneLOC229443
Upstream geneGria2, Glrb, EG626841, Pdgfc
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134G21.bB6Ng01-134G21.g
ACCDH934728DH934729
length1,172566
definitionDH934728|Mus musculus domesticus DNA, BAC clone: B6Ng01-134G21, 5' end.DH934729|Mus musculus domesticus DNA, BAC clone: B6Ng01-134G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,418,744 - 81,419,950)(81,264,041 - 81,264,611)
sequence
gaattcagtagctgcagtacttaatatctaatatttacatgttttaaata
ttatatatatagactttccattcgtagaaaaatgtaatcacttctacgcc
ctattagttaatttgtgtgactcccattaatgctaccctaatgaaacatg
tacaccagtagagtctgagttgcattccgactaagtacagtgagcacaga
gatgtaaatatgatactatctgttagattcctagaataaggtaattgtcc
aagtacatcctttgtttcttttgaccccaaattttgaagaaatgatgttc
cttgcttattttatagaaataagccataaattcaggccaaccattccact
acctgtattctttacaaaataactcatatttaatgtattacattgtttta
ttttttaaatagtccttgtcaatattgtgtgtgctctaccccagccttga
acggctggatcagaccttgtttatcacagttgctagctcacctatggtgg
agtctttcaacctaggtaaagtcctgccacttctgcagcttcctacaaga
agccactacctgctgaacagctgagcttgtcttcctgatgaggtcctggc
aatgtgtgtgtgtgtgtgtgtgtgtgtgcattttgcccaattatattcag
accttagaattaaaacattgagccttgatcagagaactttgtcttggctc
attctttttctcgctctccttgccatccatccccagctttcctttaagga
accctgtaatccttggcagtggaaggctacaattgtggccagaaccttgg
gttggtagaaagagacctagagtaagagacacaatagcttaaaggcactt
ttatgtgaagctaatggtgtaaatatttgcttttgtttagaaaattaatt
tagctgccaaggaaagatgtgaagctcataggacacatggccctcagtac
aaccgaagtgagtgaatgaatgtctgtcatatctttttctttgttgtttg
tttgtttggttttcgagacagatctcctgatagcctgctgaacaggactc
acctgtagacaaggctgcttggaaccagaatcgccttgcccacttcaccc
ggccttgctgcctctcgaggctcggattagggtgcaccacattccgcgca
ttctgtaattctattttgcttt
tcacaccaagctgggccagagatttccgtggaaagcctctggtacccagg
cccacagtttgcctacatggatcctatcccaggtagagagtatttctatg
tatctgtgactgacacaaagggatgggaagagggcgagactgaatcctct
gataggtttagtaaaatccacagggacctgagatagtgagggagtgcagc
ctaatggaagcaatctgatacagggatgttgatgataatagaaagaatgt
gtaggagggcaggaaggaaagagtaaattgcatatataagtccaggtcca
atgtggctactgtggatcccaggtattctaaagaatcaattaggaatcaa
atagatttttaaaaaagcattaatttctgcagatgggatagatccctggg
ggcggggggggggggtctctgctctatttttttttgtccatttcctttag
acaggaacaattctgggttaaaatttttgaggtaagtgggtggccccatc
cctcaactggaagctgtgcctatctctgggaagtggtctctacagcttct
atcttcccattggccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81418744_81419950
seq2: B6Ng01-134G21.b_47_1218 (reverse)

seq1  AAAGCAAAATTAGAATATGACAGACATGGCCGGGAATGGTGGTGCACACC  50
      ||||||||| ||||  || ||||| || ||  ||||| ||||||||| | 
seq2  AAAGCAAAA-TAGA--ATTACAGA-AT-GCGCGGAAT-GTGGTGCACCC-  43

seq1  TTTAATCCCAGCACTCGGGAGGCAGGCAGAGGCGCGGGGTGAAGGTGGGG  100
        |||||| ||| |||| |||||||  ||    || |||||||   | ||
seq2  --TAATCCGAGC-CTCGAGAGGCAGCAAG----GCCGGGTGAA---GTGG  83

seq1  GCAAGGCGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTCCC  150
      ||||||||| |||||  | ||||  |||||| |||||| | |||||||| 
seq2  GCAAGGCGA-TTCTGGTTCCAAG--CAGCCTTGTCTAC-AGGTGAGTCCT  129

seq1  ATGTCAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAACAA  200
       | |||||   ||||||   ||||    |||||||||||| |||| | | 
seq2  GT-TCAGC--AGGCTATCAGGAGA---TCTGTCTCGAAAACCAAACAAAC  173

seq1  AAACAAAACAAACAAAGAAAAAAGAATATGACAGACATTCATTCACTCAC  250
      ||||      ||||||||||||   |||||||||||||||||||||||||
seq2  AAAC------AACAAAGAAAAA--GATATGACAGACATTCATTCACTCAC  215

seq1  TTCGGTTGTACTGAGGGCCATGTGTCCTATGAGCTTCACATCTTTCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTTGTACTGAGGGCCATGTGTCCTATGAGCTTCACATCTTTCCTTG  265

seq1  GCAGCTAAATTAATTTTCTAAACAAAAGCAAATATTTACACCATTAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAAATTAATTTTCTAAACAAAAGCAAATATTTACACCATTAGCTT  315

seq1  CACATAAAAGTGCCTTTAAGCTATTGTGTCTCTTACTCTAGGTCTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAAGTGCCTTTAAGCTATTGTGTCTCTTACTCTAGGTCTCTTTC  365

seq1  TACCAACCCAAGGTTCTGGCCACAATTGTAGCCTTCCACTGCCAAGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACCCAAGGTTCTGGCCACAATTGTAGCCTTCCACTGCCAAGGATT  415

seq1  ACAGGGTTCCTTAAAGGAAAGCTGGGGATGGATGGCAAGGAGAGCGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTCCTTAAAGGAAAGCTGGGGATGGATGGCAAGGAGAGCGAGAA  465

seq1  AAAGAATGAGCCAAGACAAAGTTCTCTGATCAAGGCTCAATGTTTTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAGCCAAGACAAAGTTCTCTGATCAAGGCTCAATGTTTTAATT  515

seq1  CTAAGGTCTGAATATAATTGGGCAAAATGCACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTCTGAATATAATTGGGCAAAATGCACACACACACACACACACAC  565

seq1  ACACATTGCCAGGACCTCATCAGGAAGACAAGCTCAGCTGTTCAGCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGCCAGGACCTCATCAGGAAGACAAGCTCAGCTGTTCAGCAGGT  615

seq1  AGTGGCTTCTTGTAGGAAGCTGCAGAAGTGGCAGGACTTTACCTAGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTCTTGTAGGAAGCTGCAGAAGTGGCAGGACTTTACCTAGGTTG  665

seq1  AAAGACTCCACCATAGGTGAGCTAGCAACTGTGATAAACAAGGTCTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCCACCATAGGTGAGCTAGCAACTGTGATAAACAAGGTCTGATC  715

seq1  CAGCCGTTCAAGGCTGGGGTAGAGCACACACAATATTGACAAGGACTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGTTCAAGGCTGGGGTAGAGCACACACAATATTGACAAGGACTATT  765

seq1  TAAAAAATAAAACAATGTAATACATTAAATATGAGTTATTTTGTAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAAAACAATGTAATACATTAAATATGAGTTATTTTGTAAAGAA  815

seq1  TACAGGTAGTGGAATGGTTGGCCTGAATTTATGGCTTATTTCTATAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTAGTGGAATGGTTGGCCTGAATTTATGGCTTATTTCTATAAAAT  865

seq1  AAGCAAGGAACATCATTTCTTCAAAATTTGGGGTCAAAAGAAACAAAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGAACATCATTTCTTCAAAATTTGGGGTCAAAAGAAACAAAGGA  915

seq1  TGTACTTGGACAATTACCTTATTCTAGGAATCTAACAGATAGTATCATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGGACAATTACCTTATTCTAGGAATCTAACAGATAGTATCATAT  965

seq1  TTACATCTCTGTGCTCACTGTACTTAGTCGGAATGCAACTCAGACTCTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTCTGTGCTCACTGTACTTAGTCGGAATGCAACTCAGACTCTAC  1015

seq1  TGGTGTACATGTTTCATTAGGGTAGCATTAATGGGAGTCACACAAATTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTACATGTTTCATTAGGGTAGCATTAATGGGAGTCACACAAATTAA  1065

seq1  CTAATAGGGCGTAGAAGTGATTACATTTTTCTACGAATGGAAAGTCTATA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGGGCGTAGAAGTGATTACATTTTTCTACGAATGGAAAGTCTATA  1115

seq1  TATATAATATTTAAAACATGTAAATATTAGATATTAAGTACTGCAGCTAC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATATTTAAAACATGTAAATATTAGATATTAAGTACTGCAGCTAC  1165

seq1  TGAATTC  1207
      |||||||
seq2  TGAATTC  1172

seq1: chr3_81264041_81264611
seq2: B6Ng01-134G21.g_67_638

seq1  GAATTCTCACACCAAGCTGGGCCAGAGATTTCCGTGGAAAGCCTCTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACACCAAGCTGGGCCAGAGATTTCCGTGGAAAGCCTCTGGTA  50

seq1  CCCAGGCCCACAGTTTGCCTACATGGATCCTATCCCAGGTAGAGAGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCCACAGTTTGCCTACATGGATCCTATCCCAGGTAGAGAGTATT  100

seq1  TCTATGTATCTGTGACTGACACAAAGGGATGGGAAGAGGGCGAGACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATCTGTGACTGACACAAAGGGATGGGAAGAGGGCGAGACTGAA  150

seq1  TCCTCTGATAGGTTTAGTAAAATCCACAGGGACCTGAGATAGTGAGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGATAGGTTTAGTAAAATCCACAGGGACCTGAGATAGTGAGGGAG  200

seq1  TGCAGCCTAATGGAAGCAATCTGATACAGGGATGTTGATGATAATAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTAATGGAAGCAATCTGATACAGGGATGTTGATGATAATAGAAA  250

seq1  GAATGTGTAGGAGGGCAGGAAGGAAAGAGTAAATTGCATATATAAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTAGGAGGGCAGGAAGGAAAGAGTAAATTGCATATATAAGTCCA  300

seq1  GGTCCAATGTGGCTACTGTGGATCCCAGGTATTCTAAAGAATCAATTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAATGTGGCTACTGTGGATCCCAGGTATTCTAAAGAATCAATTAGG  350

seq1  AATCAAATAGATTTTTAAAAAAGCATTAATTTCTGCAGATGGGATAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATAGATTTTTAAAAAAGCATTAATTTCTGCAGATGGGATAGATC  400

seq1  CCTGGGGGCGGGGGGGGGGGGTCTCTGCTCTA-TTTTTTTTGTCCATTTC  449
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTGGGGGCGGGGGGGGGGGGTCTCTGCTCTATTTTTTTTTGTCCATTTC  450

seq1  CTTTAGACAGGAACAATTCTGGGTTAAAATTTTTGAGGTAAGTGGGTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGACAGGAACAATTCTGGGTTAAAATTTTTGAGGTAAGTGGGTGGC  500

seq1  CCCATCCCTCAACTGGAAGCTGTGCCTATCTACTGGAGGTGGTCTCTACA  549
      |||||||||||||||||||||||||||||||   ||| ||||||||||||
seq2  CCCATCCCTCAACTGGAAGCTGTGCCTATCTCTGGGAAGTGGTCTCTACA  550

seq1  GCTTCTATCTTCCCATTGGTCC  571
      ||||||||||||||||||| ||
seq2  GCTTCTATCTTCCCATTGGCCC  572