BAC Information

Click to search

BAC

Clone NameB6Ng01-134J09
Chromosome3 (Build37)
Map Location 26,609,348 - 26,610,471
singlet/doubletsinglet
Overlap geneSpata16
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134J09.bB6Ng01-134J09.g
ACCDH934846DH934847
length1,1121,225
definitionDH934846|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J09, 5' end.DH934847|Mus musculus domesticus DNA, BAC clone: B6Ng01-134J09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcagaatatatccagtggcatctttgtttgcttaagcacaga
gccttggcaatatcagaaatggcttaagatggagtctccctatagtcatc
agagtgacctcggaggccacactgtccctcctgtcttcccagcagcttgc
ctcgggctgccactgcaccccatctccttctcctctttattcatcttagg
ctagggagaacaaggtgacttgacacagggcttggcacattcaacatgga
aattcatccctggttgctccactttttaacaactttttttttcattcttt
gacaaattcatacatatatactgaattctgttcactcacacacacacaca
cacacacacacacacacacacacacacacacacacacacacaccattata
accaaagggcttcattgatgcgggacaagccctttctcttgtgctgaaat
cctactggttcccaagaagcattgtctccctagaggaccctgaggcccca
cccctctctgacacgttaagagttcataggtgtctcctgctcatccaaag
gccctcctaattctcttcaccctccccagtctttgcttagtacctaactc
ctggatgtctcaagtatacctcagtctcttggggttttttccttatcttt
ttctcttcttttcttttattagacaaggtgttatgtaacgagctggcctc
aaactcaccacctagctacataactttgcactttctgattgccatgcctc
taccagtcagtagaggctgagattacatgtacagaccaccacccctgaga
tataccatcctgggaccagacctagggcttcattgatactgggacaagca
ctctcctgactgaactaaatcccgtttctctttgagtcttacttttgagt
ttactctttccttctgaagggctcttcagtgaattcaggtaaaggaagct
tgccttgagccaattacagcagaaatattctgtacccagatagacatgtt
gatgcttatggtctgtgacacactaatactagataatatccatcaaagct
cagattacttaatactggtgcaatttatttgctgatttctgcaactgtgg
aagcgcatatcc
gaattcttggacaaagaactcccatggtaagccccaaataactgaagttc
attgtcaaggatattgcttggttctcaaaaactgatggtaagaccctatt
aatgaaaacagtacctgcatatctcatcggacaaagagaagccaagctgg
ggccaatgtagtgacgcctagtgattagtgctgacggttctagacatagt
ctgcgtgctgctataggaaaaagggaagcactaattcagcttcagtcttc
aatggtgaactgtctgaaggaaacactggtgcatctgtggcacgaaactt
gtgagagcgaccaaacactttctgatgggatttaagaccccgtccctgag
atggaatgccatgagacacactccatagttcatactgcttaggtggtcaa
gaacctgagactagataggccacatgtctgagggaaagccaattattatt
gctatgctaaaggaacatggcaataaaaggactcctaacgacattctgtt
atagccataaattactgtctcactcagccaccatcagagatgtttcctct
tgcagtagatgggaattaatacagagacccataacttgacaatgtacaga
gtgtgagggaccttggagtactctgtgataaatgggaggctgtctttatc
aaaccactctccttaggagtcagggagctgtgcagagaggagcaggaagg
attgcaagagacagaggggacggaagccatcaaggagacagaaatgcacg
ggtgcagggtgatagcagtgtatgagacattaatttctaaagtgtattca
ggaaggagaaggagtgcgaacgagtattacctatataaagagtaacatca
aagtgtttatatgacataaaatttgacaactcgcatgcaagaacatcaat
atttatgatccccttaaatgtcagtggctaatgaattcctttatgaagat
agttttattcttcttaatataaagaaatttatactagaatagagagacac
aatttttcagcatgaagttgaagacagagactggagaagaaaacaaggca
gatcatgagattcttagatcttacctcaggctgagggatgagtgcttctg
tcactttgggagcagctaggctctgcaaccatgacgctgcttggtcaata
accatcctgatcaggtgatgccgggctgcgattctggatgctttctctga
catttaaggagagagtctacctgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26609348_26610471
seq2: B6Ng01-134J09.b_43_1154

seq1  GAATTCATTCAGAATATATCCAGTGGCATCTTTGTTTGCTTAAGCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGAATATATCCAGTGGCATCTTTGTTTGCTTAAGCACAGA  50

seq1  GCCTTGGCAATATCAGAAATGGCTTAAGATGGAGTCTCCCTATAGTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCAATATCAGAAATGGCTTAAGATGGAGTCTCCCTATAGTCATC  100

seq1  AGAGTGACCTCGGAGGCCACACTGTCCCTCCTGTCTTCCCAGCAGCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGACCTCGGAGGCCACACTGTCCCTCCTGTCTTCCCAGCAGCTTGC  150

seq1  CTCGGGCTGCCACTGCACCCCATCTCCTTCTCCTCTTTATTCATCTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGCTGCCACTGCACCCCATCTCCTTCTCCTCTTTATTCATCTTAGG  200

seq1  CTAGGGAGAACAAGGTGACTTGACACAGGGCTTGGCACATTCAACATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAGAACAAGGTGACTTGACACAGGGCTTGGCACATTCAACATGGA  250

seq1  AATTCATCCCTGGTTGCTCCACTTTTTAACAACTTTTTTTTTCATTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCCCTGGTTGCTCCACTTTTTAACAACTTTTTTTTTCATTCTTT  300

seq1  GACAAATTCATACATATATACTGAATTCTGTTCACTCACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTCATACATATATACTGAATTCTGTTCACTCACACACACACACA  350

seq1  CACACACACACACACACACACACACACACACACACACACACACCATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACCATTATA  400

seq1  ACCAAAGGGCTTCATTGATGCGGGACAAGCCCTTTCTCTTGTGCTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGGCTTCATTGATGCGGGACAAGCCCTTTCTCTTGTGCTGAAAT  450

seq1  CCTACTGGTTCCCAAGAAGCATTGTCTCCCTAGAGGACCCTGAGGCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGGTTCCCAAGAAGCATTGTCTCCCTAGAGGACCCTGAGGCCCCA  500

seq1  CCCCTCTCTGACACGTTAAGAGTTCATAGGTGTCTCCTGCTCATCCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCTGACACGTTAAGAGTTCATAGGTGTCTCCTGCTCATCCAAAG  550

seq1  GCCCTCCTAATTCTCTTCACCCTCCCCAGTCTTTGCTTAGTACCTAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCTAATTCTCTTCACCCTCCCCAGTCTTTGCTTAGTACCTAACTC  600

seq1  CTGGATGTCTCAAGTATACCTCAGTCTCTTGGGGTTTTTTCCTTATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTCTCAAGTATACCTCAGTCTCTTGGGGTTTTTTCCTTATCTTT  650

seq1  TTCTCTTCTTTTCTTTTATTAGACAAGGTGTTATGTAACGAGCTGGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTTTTCTTTTATTAGACAAGGTGTTATGTAACGAGCTGGCCTC  700

seq1  AAACTCACCACCTAGCTACATAACTTTGCAC-TTCTGATTGCCATGCCTC  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAACTCACCACCTAGCTACATAACTTTGCACTTTCTGATTGCCATGCCTC  750

seq1  TACCAGTCAGTAGAGGCTGAGATTACATGTACAGACCACCACCCCTGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTCAGTAGAGGCTGAGATTACATGTACAGACCACCACCCCTGAGA  800

seq1  TATACCATCCTGGGACCAGACCTAGGGCTTCATTGATACT-GGACAAGCA  848
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATACCATCCTGGGACCAGACCTAGGGCTTCATTGATACTGGGACAAGCA  850

seq1  CTCTCCTGACTGAACTAAATCCCGTTTCTCTTTGAGTCTTACTTTTGAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCTCCTGACTGAACTAAATCCCGTTTCTCTTTGAGTCTTACTTTTGAG-  899

seq1  TTTACTCTTTCCTTCTGAAGGGCTCTTCAGTGAATTCAGGTAAAAGGAAG  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTACTCTTTCCTTCTGAAGGGCTCTTCAGTGAATTCAGGT-AAAGGAAG  948

seq1  CTTGCCTTGAGGCAAATTACAAGCAGAAATAATTCTGTTACCCAAGATAG  998
      |||||||||| || |||||| ||||||||| |||||| ||||| ||||||
seq2  CTTGCCTTGA-GCCAATTAC-AGCAGAAAT-ATTCTG-TACCC-AGATAG  993

seq1  ACATTGTTGATGCTTTATGGTCTGTGACACACTAATACTAAATAATTATC  1048
      ||| ||||||||| |||||||||||||||||||||||||| |||| ||||
seq2  ACA-TGTTGATGC-TTATGGTCTGTGACACACTAATACTAGATAA-TATC  1040

seq1  CCTCCAAAACTCTACCATTACTAAATACT-GTGCAGTTTATTTGCTGATT  1097
      | | |||| |||    |||||| |||||| ||||| ||||||||||||||
seq2  CAT-CAAAGCTC--AGATTACTTAATACTGGTGCAATTTATTTGCTGATT  1087

seq1  CTGGCAACACTGTTGGAGCGCATATCC  1124
         |||  ||||| | |||||||||||
seq2  TCTGCA--ACTGTGGAAGCGCATATCC  1112