BAC Information

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BAC

Clone NameB6Ng01-134K19
Chromosome3 (Build37)
Map Location 48,320,081 - 48,463,991
singlet/doubletdoublet
Overlap gene1700018B24Rik
Upstream geneLOC100039426, LOC666202, LOC666208
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134K19.bB6Ng01-134K19.g
ACCDH934912DH934913
length1,0791,152
definitionDH934912|Mus musculus domesticus DNA, BAC clone: B6Ng01-134K19, 5' end.DH934913|Mus musculus domesticus DNA, BAC clone: B6Ng01-134K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,320,081 - 48,321,163)(48,462,826 - 48,463,991)
sequence
gaattcacttaacacttaaagtataaagccactttcatgcgtattgattt
caggaaatacttatgtgcacatttttgtgttggtgttttatttcctctta
ttaaaataatttatttaagaacaagaatataagtgaatgacagcaaattc
aggttaattgaatgacagcaaatttgttataaataatattttcacaagca
actgaggcatgactattgtataatgtatttaattacctcatattataatt
gggtacagatgttttatatgttcatcttcatagttattgtatgaagtttt
aattgccaaatgaaagacttagagttttacagtagtttgaaacagaagaa
caaaatcatatttgatcttttaaattctttgctcatgtctcaacaagtat
tgataggatgaaacatgtggaattggatatattccacttttccctcaaat
tttcattaaccatactgtatagagtagaaacttgattttgttgtactatt
atatgaattagaaccatagaaaagttgaatataaactcaatagaagtatt
agaatgtataatgctaatgtattgttactgtgtgtcatctcaataatatt
agcacatatatattcattttgtgttctacattaaataggcttaactttaa
aacactatgtcttatttacacaaaaaataatacaataagcaatagtcaaa
gctagatatttaagcctggaaagaaatattgcaaagattgagtccattca
aacatcagatagaacttattgattaccgacaccataataaccaccaggca
gaaagatgtagaaacttagaatcccttctcccgggacctataatctccta
atggtggttgtagacatataatcaaatagccataaaaatgcagtgggttc
tatttctaatagacatttgaaaatgatgttctgtgggctcagagaagaat
gcacttagctctgcataataattcagagaagacttcccataggactatca
tgtcagctacagttctgtttccattatttcagactttcaaatgtccagtc
taataatccatacatttatagcaagaaaa
gaattccccatagacgtgacatggtcacagttgaatctgacctggcaacc
cctcaaccaggactcatttcccaggagattttcttccttgtggtgagctg
aagatacaatgaaccagaacaccatccattaagccagatgtgacgcactc
agctgtgtgtttgagtccatctttagataagacactctacttaataggca
aataaacaagatacatcagaatattacaatgtaaaatcaaacatgtatta
aaactaaggtttcttctattactagggacaattgtgaggaaaagttaaca
tatttgagtccaatggggggagggaaactcagtggttatttgattctagt
tttataagaatattatatattaaagcacaacactaaaataagtatatagt
gatgactgatcaaacaaaggcaaaggatatcataaatcaccaattgcttt
cctcagagaaggaaacatttagtgggaacattatatatacttatttcagt
gtgttttacattatttttaaatttttggcaaattgagattcctgctagtt
gtctttatttacaaacctcagtagtcttttctgctgatattcgataaatc
atttaataattatttagaaatacagatgctgtgttgaataattcatgctg
ccatcctcacctcagaaaagctaattacctaatttccatgacctttgcat
gtttttctgtttggtttcatagtcaattcctaaatgcttggtgagtggcc
actgtgagttaggtaatgtgtttatttaattaatgttgatatttagcata
cattaattatatctacaaccagaaaagtgatggcagcaaaaaaatgaaga
ttttttccatgttattatgcacaggttcatcccaacaaacacttacaagg
caccgacaatctgggccacacatatgctaagtgatagaaattaaatagtt
gcctgtaacatcatcttggcccttgagaaaatacagggtgctgtgcagcc
tcatttttattatttactgaagtatgtttaaaatatcaccataaagtata
ttttgacgcataataatagttatgccattaaattttaatgcgcaagaaca
gttaagtttatatactctcaagagcgctcttagtatttaaaggataggaa
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48320081_48321163
seq2: B6Ng01-134K19.b_49_1127

seq1  GAATTCACTTAACACTTAAAGTATAAAGCCACTTTCATGCGTATTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAACACTTAAAGTATAAAGCCACTTTCATGCGTATTGATTT  50

seq1  CAGGAAATACTTATGTGCACATTTTTGTGTTGGTGTTTTATTTCCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATACTTATGTGCACATTTTTGTGTTGGTGTTTTATTTCCTCTTA  100

seq1  TTAAAATAATTTATTTAAGAACAAGAATATAAGTGAATGACAGCAAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATTTATTTAAGAACAAGAATATAAGTGAATGACAGCAAATTC  150

seq1  AGGTTAATTGAATGACAGCAAATTTGTTATAAATAATATTTTCACAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATTGAATGACAGCAAATTTGTTATAAATAATATTTTCACAAGCA  200

seq1  ACTGAGGCATGACTATTGTATAATGTATTTAATTACCTCATATTATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCATGACTATTGTATAATGTATTTAATTACCTCATATTATAATT  250

seq1  GGGTACAGATGTTTTATATGTTCATCTTCATAGTTATTGTATGAAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACAGATGTTTTATATGTTCATCTTCATAGTTATTGTATGAAGTTTT  300

seq1  AATTGCCAAATGAAAGACTTAGAGTTTTACAGTAGTTTGAAACAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCAAATGAAAGACTTAGAGTTTTACAGTAGTTTGAAACAGAAGAA  350

seq1  CAAAATCATATTTGATCTTTTAAATTCTTTGCTCATGTCTCAACAAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCATATTTGATCTTTTAAATTCTTTGCTCATGTCTCAACAAGTAT  400

seq1  TGATAGGATGAAACATGTGGAATTGGATATATTCCACTTTTCCCTCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGATGAAACATGTGGAATTGGATATATTCCACTTTTCCCTCAAAT  450

seq1  TTTCATTAACCATACTGTATAGAGTAGAAACTTGATTTTGTTGTACTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAACCATACTGTATAGAGTAGAAACTTGATTTTGTTGTACTATT  500

seq1  ATATGAATTAGAACCATAGAAAAGTTGAATATAAACTCAATAGAAGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTAGAACCATAGAAAAGTTGAATATAAACTCAATAGAAGTATT  550

seq1  AGAATGTATAATGCTAATGTATTGTTACTGTGTGTCATCTCAATAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTATAATGCTAATGTATTGTTACTGTGTGTCATCTCAATAATATT  600

seq1  AGCACATATATATTCATTTTGTGTTCTACATTAAATAGGCTTAACTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATATATATTCATTTTGTGTTCTACATTAAATAGGCTTAACTTTAA  650

seq1  AACACTATGTCTTATTTACACAAAAAATAATACAATAAGCAATAGTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATGTCTTATTTACACAAAAAATAATACAATAAGCAATAGTCAAA  700

seq1  GCTAGATATTTAAGCCTGGAAAGAAATATTGCAAAGATTGAGTCCATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATATTTAAGCCTGGAAAGAAATATTGCAAAGATTGAGTCCATTCA  750

seq1  AACATCAGATAGAACTTATTGATTACCGACACCATAATAACCACCAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGATAGAACTTATTGATTACCGACACCATAATAACCACCAGGCA  800

seq1  GAAAGATGTAGAAACTTAGAATCCCTTCTCCCGGGACCTATAATCTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGTAGAAACTTAGAATCCCTTCTCCCGGGACCTATAATCTCCTA  850

seq1  ATGGTGGTTGTAGACATATAATCAAATAGCCATAAAAATGCAGTGGGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTTGTAGACATATAATCAAATAGCCATAAAAATGCAGTGGGTTC  900

seq1  TATTTCTAATAGACATTTGAAAATGATGTTCTGTGGGCTCAGAGAAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAATAGACATTTGAAAATGATGTTCTGTGGGCTCAGAGAAGAAT  950

seq1  GCACTTAGCTCTGCATAATAATTCAGAGAAGACTTCCCATAGGAACTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCACTTAGCTCTGCATAATAATTCAGAGAAGACTTCCCATAGG-ACTATC  999

seq1  ATGTCAGCTACAAGTTCTGTTTCCATTATTCAAGACTTTCAAAATGTCAA  1050
      ||||||||||| ||||||||||||||||||  |||||||| ||||||| |
seq2  ATGTCAGCTAC-AGTTCTGTTTCCATTATTTCAGACTTTC-AAATGTCCA  1047

seq1  GTCTATATATCCATACATTTAATAGCAAGAAAA  1083
      |||||   |||||||||||| ||||||||||||
seq2  GTCTAATAATCCATACATTT-ATAGCAAGAAAA  1079

seq1: chr3_48462826_48463991
seq2: B6Ng01-134K19.g_68_1219 (reverse)

seq1  TTTTCCTATCCTTTTAAAATAACCTATAAGCTGCTCTTGAGTACTAATAA  50
      ||||||||||||||  |||||  |||  ||| ||||||||| | ||   |
seq2  TTTTCCTATCCTTT--AAATA--CTAAGAGC-GCTCTTGAG-AGTATATA  44

seq1  AACTTTTAAACTGGTCTT-AGCATTAAAATTATATGGCATAAACATATTA  99
      |||||   ||||| ||||  |||||||||||  |||||||||   |||||
seq2  AACTT---AACTGTTCTTGCGCATTAAAATTTAATGGCATAA--CTATTA  89

seq1  TTATGTGTCAAAATTATACTTATAGATGATTATTTTAAACATACTTCAGT  149
      ||||| ||||||| |||||||   | ||| ||||||||||||||||||||
seq2  TTATGCGTCAAAA-TATACTTTATGGTGA-TATTTTAAACATACTTCAGT  137

seq1  AAATAATAAAAAATGAGGCTGCACAGCACCCTGTAATTTTCTCAAGGGCA  199
      ||||||| |||||||||||||||||||||||||| |||||||||||||| 
seq2  AAATAAT-AAAAATGAGGCTGCACAGCACCCTGT-ATTTTCTCAAGGGCC  185

seq1  AAGATGATGTTACAGGCAACTATTTAATTTCTATCACTTAGCATATGTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATGTTACAGGCAACTATTTAATTTCTATCACTTAGCATATGTGT  235

seq1  GG-CCAGATTGTCGGTGCCTTGTAAGTGTTTGTTGGGATGAACCTGTGCA  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGATTGTCGGTGCCTTGTAAGTGTTTGTTGGGATGAACCTGTGCA  285

seq1  TAATAACATGGAAAAAATTCTTCATTTTTTTGCTGCCATCACTTTTCTGG  348
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAATAACATGGAAAAAA-TCTTCATTTTTTTGCTGCCATCACTTTTCTGG  334

seq1  TTGTAGATATAATTAATGTATGCTAAATATCAACATTAATTAAATAAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATATAATTAATGTATGCTAAATATCAACATTAATTAAATAAACA  384

seq1  CATTACCTAACTCACAGTGGCCACTCACCAAGCATTTAGGAATTGACTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTAACTCACAGTGGCCACTCACCAAGCATTTAGGAATTGACTAT  434

seq1  GAAACCAAACAGAAAAACATGCAAAGGTCATGGAAATTAGGTAATTAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAAACAGAAAAACATGCAAAGGTCATGGAAATTAGGTAATTAGCT  484

seq1  TTTCTGAGGTGAGGATGGCAGCATGAATTATTCAACACAGCATCTGTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGGTGAGGATGGCAGCATGAATTATTCAACACAGCATCTGTATT  534

seq1  TCTAAATAATTATTAAATGATTTATCGAATATCAGCAGAAAAGACTACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAATTATTAAATGATTTATCGAATATCAGCAGAAAAGACTACTG  584

seq1  AGGTTTGTAAATAAAGACAACTAGCAGGAATCTCAATTTGCCAAAAATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTAAATAAAGACAACTAGCAGGAATCTCAATTTGCCAAAAATTT  634

seq1  AAAAATAATGTAAAACACACTGAAATAAGTATATATAATGTTCCCACTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATGTAAAACACACTGAAATAAGTATATATAATGTTCCCACTAA  684

seq1  ATGTTTCCTTCTCTGAGGAAAGCAATTGGTGATTTATGATATCCTTTGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCTTCTCTGAGGAAAGCAATTGGTGATTTATGATATCCTTTGCC  734

seq1  TTTGTTTGATCAGTCATCACTATATACTTATTTTAGTGTTGTGCTTTAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGATCAGTCATCACTATATACTTATTTTAGTGTTGTGCTTTAAT  784

seq1  ATATAATATTCTTATAAAACTAGAATCAAATAACCACTGAGTTTCCCTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATTCTTATAAAACTAGAATCAAATAACCACTGAGTTTCCCTCC  834

seq1  CCCCATTGGACTCAAATATGTTAACTTTTCCTCACAATTGTCCCTAGTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGGACTCAAATATGTTAACTTTTCCTCACAATTGTCCCTAGTAA  884

seq1  TAGAAGAAACCTTAGTTTTAATACATGTTTGATTTTACATTGTAATATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAACCTTAGTTTTAATACATGTTTGATTTTACATTGTAATATTC  934

seq1  TGATGTATCTTGTTTATTTGCCTATTAAGTAGAGTGTCTTATCTAAAGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATCTTGTTTATTTGCCTATTAAGTAGAGTGTCTTATCTAAAGAT  984

seq1  GGACTCAAACACACAGCTGAGTGCGTCACATCTGGCTTAATGGATGGTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAACACACAGCTGAGTGCGTCACATCTGGCTTAATGGATGGTGT  1034

seq1  TCTGGTTCATTGTATCTTCAGCTCACCACAAGGAAGAAAATCTCCTGGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCATTGTATCTTCAGCTCACCACAAGGAAGAAAATCTCCTGGGA  1084

seq1  AATGAGTCCTGGTTGAGGGGTTGCCAGGTCAGATTCAACTGTGACCATGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCCTGGTTGAGGGGTTGCCAGGTCAGATTCAACTGTGACCATGT  1134

seq1  CACGTCTATGGGGAATTC  1166
      ||||||||||||||||||
seq2  CACGTCTATGGGGAATTC  1152