BAC Information

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BAC

Clone NameB6Ng01-134M04
Chromosome3 (Build37)
Map Location 10,672,939 - 10,783,739
singlet/doubletdoublet
Overlap genenone
Upstream genePag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
Downstream geneLOC670564, LOC383826, EG667978, LOC667999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134M04.bB6Ng01-134M04.g
ACCDH934976DH934977
length1,1671,076
definitionDH934976|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M04, 5' end.DH934977|Mus musculus domesticus DNA, BAC clone: B6Ng01-134M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,672,939 - 10,674,115)(10,782,647 - 10,783,739)
sequence
gaattcatgatgttatgagggggacctgaaagttctgtgtagggtacacc
tgggatcccagtctgttgtaggcagagacaggcagtacatgagtttgggc
tatacagaccctgactcacaaaacaaaactaatcaactaaataataaaaa
acagagaagtaaacaaaacaaacacacgaaagtaccagagagagcccata
aaataaaataagataagataaaataaaataaaataaaataaaatccccat
aggatttgcagacagaacaaaatgtcattatcagcaaactaggaagcagt
cctcagcaggcgcttagtctgccaatgtctgtattagtcatggcatgtct
agcttctgcaagtgaaagaaatttctgttaataaggtcttcatttgtggt
attttgttatatttatgcaaactacttgcatactttgactctttggaaat
ctcaagtaacttcctgtctagtcaactgtctagacaacaggtttctttgt
ttctttctttttaatattttaaactttttattttgtgttccttatagttt
gtagcccagactatgaagtctgggcttctgagtctactaaatttttgcag
acagatggatgcattaagaaataaatattaaaattcctgtataacatttg
tgatattctattaatttattattatatctgtaagtaatgaaataatgaaa
tgacatttatttgataatttacaagttaagttttattctcatgttgaatt
tttccatatttgattaaaatcaatttagtttttttatgcttggaagagaa
gcaatataaatcctgtttataaaatcataaaatttagaatgaatcaagta
cgggtttggcttttgcttttgcctgatagaaaccatgtagacctgtgact
ccctgaactgtgctgtgttcttgcttcattgggccagttgtaaattgtgt
aaatgtgtactgagcttttgcttgtactagacatgcagtaaacacacgtt
tccagtgtgatggatctagaagtgtcctcaagactgatgtgccagtacac
tgagagatttcttcagagaaccattgatagttggagatattctaaagcac
acctaggccaagagggaatgcgttgtgtcaagcaggaatggtaattggct
gtaactagtctgaagct
gaattcattatgtgattgatgctggctttgaacttgatcctcttcctgcc
tcccaagtattatgcttacagacatgcaatagctgacagactcttaacta
ttatatttctttcctttttaacctaaggtttttaagttttggaggctata
aatggttctcgttctggaatatgcttcaagttgatttaatattgatcaaa
tttgaacattaatttctcctaatagtaaaacaatagtggttttagaataa
aattcttatcttgttcctttgtgcaaattaagatagcagagactgtagtt
aaagatgcattcaatgagcctgagctattagactgttttctatttaacat
cactgagcagcagcctatgctggcagggcaactcttccaaacagcaacaa
aaagacccagtcttagagaaatgctgaaggtccaccaagggtgtctgtgg
gatgatgtatggcggatcttcaatcaaaggtcattagtaaccaagactga
agatagcatccagagtttttaggttatcctggctaaagttcagatatgta
gtcaaaaacacaaggggcattaaaggtgctcattgctacaattgagtttt
taaagctgccgattatagaactaatatagaagagtcagtttctgttattc
tgtgctgtccttgggaccctacacatactaacatctctagtgttcaagat
ctttatataaaatggcagtgtttacattgaccaaagtgcatcattctata
gaaatatctctggttgacttgtttacctaatgcaatgtagaggctgtgcc
atgacttattattttgagaataatgacataataaaactaaatatatgttt
ggtacacatgcaactttctaggtattttatttgtagctggttgaattatt
ggttaagaccccatggagatgagagatgtgtgcgatacatcatattagaa
tatatttgaaatatcatgtattcatatatatcacacaattcacctccgtg
agtctgctggcaggcgagagctggagcgctcatgaggcaagtttccacag
aagctcacctcctggagttctggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_10672939_10674115
seq2: B6Ng01-134M04.b_43_1209

seq1  GAATTCATGATGTTATGAGGGGGACCTGAAAGTTCTGTGTAGGGTACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGTTATGAGGGGGACCTGAAAGTTCTGTGTAGGGTACACC  50

seq1  TGGGATCCCAGTCTGTTGTAGGCAGAGACAGGCAGTACATGAGTTTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCCAGTCTGTTGTAGGCAGAGACAGGCAGTACATGAGTTTGGGC  100

seq1  TATACAGACCCTGACTCACAAAACAAAACTAATCAACTAAATAATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGACCCTGACTCACAAAACAAAACTAATCAACTAAATAATAAAAA  150

seq1  ACAGAGAAGTAAACAAAACAAACACACGAAAGTACCAGAGAGAGCCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAGTAAACAAAACAAACACACGAAAGTACCAGAGAGAGCCCATA  200

seq1  AAATAAAATAAGATAAGATAAAATAAAATAAAATAAAATAAAATCCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAGATAAGATAAAATAAAATAAAATAAAATAAAATCCCCAT  250

seq1  AGGATTTGCAGACAGAACAAAATGTCATTATCAGCAAACTAGGAAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTGCAGACAGAACAAAATGTCATTATCAGCAAACTAGGAAGCAGT  300

seq1  CCTCAGCAGGCGCTTAGTCTGCCAATGTCTGTATTAGTCATGGCATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCAGGCGCTTAGTCTGCCAATGTCTGTATTAGTCATGGCATGTCT  350

seq1  AGCTTCTGCAAGTGAAAGAAATTTCTGTTAATAAGGTCTTCATTTGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGCAAGTGAAAGAAATTTCTGTTAATAAGGTCTTCATTTGTGGT  400

seq1  ATTTTGTTATATTTATGCAAACTACTTGCATACTTTGACTCTTTGGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTATATTTATGCAAACTACTTGCATACTTTGACTCTTTGGAAAT  450

seq1  CTCAAGTAACTTCCTGTCTAGTCAACTGTCTAGACAACAGGTTTCTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTAACTTCCTGTCTAGTCAACTGTCTAGACAACAGGTTTCTTTGT  500

seq1  TTCTTTCTTTTTAATATTTTAAACTTTTTATTTTGTGTTCCTTATAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTTAATATTTTAAACTTTTTATTTTGTGTTCCTTATAGTTT  550

seq1  GTAGCCCAGACTATGAAGTCTGGGCTTCTGAGTCTACTAAATTTTTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCAGACTATGAAGTCTGGGCTTCTGAGTCTACTAAATTTTTGCAG  600

seq1  ACAGATGGATGCATTAAGAAATAAATATTAAAATTCCTGTATAACATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGATGCATTAAGAAATAAATATTAAAATTCCTGTATAACATTTG  650

seq1  TGATATTCTATTAATTTATTATTATATCTGTAAGTAATGAAATAATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCTATTAATTTATTATTATATCTGTAAGTAATGAAATAATGAAA  700

seq1  TGACATTTATTTGATAATTTACAAGTTAAGTTTTATTCTCATGTTGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTATTTGATAATTTACAAGTTAAGTTTTATTCTCATGTTGAATT  750

seq1  TTTCCATATTTGATTAAAATCAATTTAGTTTTTTTATGCTTGGAAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATTTGATTAAAATCAATTTAGTTTTTTTATGCTTGGAAGAGAA  800

seq1  GCAATATAAATCCTGTTTATAAAATCATAAAATTTAGAATGAATCAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATAAATCCTGTTTATAAAATCATAAAATTTAGAATGAATCAAGTA  850

seq1  CGGGTTTGGCTTTTGCTTTTGCCTGATAGAAACCATGTAGACCTGTGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTGGCTTTTGCTTTTGCCTGATAGAAACCATGTAGACCTGTGACT  900

seq1  CCCTGAACTGTGCTGTGTTCTTGCTTCATTGGGCCAGTTGTAAATTGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACTGTGCTGTGTTCTTGCTTCATTGGGCCAGTTGTAAATTGTGT  950

seq1  AAATGTGTACTGAGCTTTTGCTTGTACTAGACATGCAGTAAACACAACGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  AAATGTGTACTGAGCTTTTGCTTGTACTAGACATGCAGTAAACAC-ACG-  998

seq1  TTTCCAGGTGTGGATGGATCTAGAAGTGT-CTCAAGACTGATGTTGCCCA  1049
      |||||| |||| ||||||||||||||||| ||||||||||||||   |||
seq2  TTTCCA-GTGT-GATGGATCTAGAAGTGTCCTCAAGACTGATGT--GCCA  1044

seq1  GTACACTGAGAGATTTTCTTCAGAGAACCA-TGATAG-TGGAGATA-TCT  1096
      ||||||||||||| |||||||||||||||| |||||| |||||||| |||
seq2  GTACACTGAGAGA-TTTCTTCAGAGAACCATTGATAGTTGGAGATATTCT  1093

seq1  AGAGCACAACCTAGGGCCAAGAGGGAATGGCGTTGTGTCAAGGCAGGAAT  1146
      | ||||| ||||| |||||||||||||| |||||||||||| ||||||||
seq2  AAAGCAC-ACCTA-GGCCAAGAGGGAAT-GCGTTGTGTCAA-GCAGGAAT  1139

seq1  TGTAATTGGCTGTAGCTAGTTTCTAGAAGCT  1177
       ||||||||||||| ||||| |   ||||||
seq2  GGTAATTGGCTGTAACTAGTCT---GAAGCT  1167

seq1: chr3_10782647_10783739
seq2: B6Ng01-134M04.g_68_1143 (reverse)

seq1  ATGCCAGAACTCCAGGAGGTGAGCTTCTGTGAAACTTTGCCTCATGAGCG  50
      ||||||||||||||||||||||||||||||| ||  ||||||||||||||
seq2  ATGCCAGAACTCCAGGAGGTGAGCTTCTGTGGAAACTTGCCTCATGAGCG  50

seq1  CTTCCAGGCCTCTCGGCCTGCCAAGCAGACTTCACGGAGGTGAATTTGTG  100
      | |||||  ||||| ||||||| ||||||| ||||||||||||| |||||
seq2  C-TCCAG--CTCTC-GCCTGCC-AGCAGAC-TCACGGAGGTGAA-TTGTG  93

seq1  TGATATTATTATGAATACATTGATATTTCAAATATATTTTCTAATTATGA  150
      ||||||   |||||||||| ||||||||||||||||  |||||| |||||
seq2  TGATAT--ATATGAATACA-TGATATTTCAAATATA--TTCTAA-TATGA  137

seq1  TTGTTATCGCACACATCTCTTCATCTCCATGGGGTCTTAACCAATAATTC  200
      |   ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  T--GTATCGCACACATCTC-TCATCTCCATGGGGTCTTAACCAATAATTC  184

seq1  AACCAGCTACAAATAAAAATACCTAGAAAGTTGCATGTGTACCAAACATA  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACCAGCTACAAAT-AAAATACCTAGAAAGTTGCATGTGTACCAAACATA  233

seq1  TATTTAGTTTTATTATGTCATTATTCTCAAAATAATAAGTCATGGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTTTTATTATGTCATTATTCTCAAAATAATAAGTCATGGCACAG  283

seq1  CCTCTACATTGCATTAGGTAAACAAGTCAACCAGAGATATTTCTATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACATTGCATTAGGTAAACAAGTCAACCAGAGATATTTCTATAGAA  333

seq1  TGATGCACTTTGGTCAATGTAAACACTGCCATTTTATATAAAGATCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCACTTTGGTCAATGTAAACACTGCCATTTTATATAAAGATCTTGA  383

seq1  ACACTAGAGATGTTAGTATGTGTAGGGTCCCAAGGACAGCACAGAATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAGATGTTAGTATGTGTAGGGTCCCAAGGACAGCACAGAATAAC  433

seq1  AGAAACTGACTCTTCTATATTAGTTCTATAATCGGCAGCTTTAAAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGACTCTTCTATATTAGTTCTATAATCGGCAGCTTTAAAAACTC  483

seq1  AATTGTAGCAATGAGCACCTTTAATGCCCCTTGTGTTTTTGACTACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAGCAATGAGCACCTTTAATGCCCCTTGTGTTTTTGACTACATAT  533

seq1  CTGAACTTTAGCCAGGATAACCTAAAAACTCTGGATGCTATCTTCAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTTAGCCAGGATAACCTAAAAACTCTGGATGCTATCTTCAGTCT  583

seq1  TGGTTACTAATGACCTTTGATTGAAGATCCGCCATACATCATCCCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTAATGACCTTTGATTGAAGATCCGCCATACATCATCCCACAGA  633

seq1  CACCCTTGGTGGACCTTCAGCATTTCTCTAAGACTGGGTCTTTTTGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGGTGGACCTTCAGCATTTCTCTAAGACTGGGTCTTTTTGTTGC  683

seq1  TGTTTGGAAGAGTTGCCCTGCCAGCATAGGCTGCTGCTCAGTGATGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGAAGAGTTGCCCTGCCAGCATAGGCTGCTGCTCAGTGATGTTAA  733

seq1  ATAGAAAACAGTCTAATAGCTCAGGCTCATTGAATGCATCTTTAACTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAACAGTCTAATAGCTCAGGCTCATTGAATGCATCTTTAACTACA  783

seq1  GTCTCTGCTATCTTAATTTGCACAAAGGAACAAGATAAGAATTTTATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCTATCTTAATTTGCACAAAGGAACAAGATAAGAATTTTATTCT  833

seq1  AAAACCACTATTGTTTTACTATTAGGAGAAATTAATGTTCAAATTTGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACTATTGTTTTACTATTAGGAGAAATTAATGTTCAAATTTGATC  883

seq1  AATATTAAATCAACTTGAAGCATATTCCAGAACGAGAACCATTTATAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAATCAACTTGAAGCATATTCCAGAACGAGAACCATTTATAGCC  933

seq1  TCCAAAACTTAAAAACCTTAGGTTAAAAAGGAAAGAAATATAATAGTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACTTAAAAACCTTAGGTTAAAAAGGAAAGAAATATAATAGTTAA  983

seq1  GAGTCTGTCAGCTATTGCATGTCTGTAAGCATAATACTTGGGAGGCAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGTCAGCTATTGCATGTCTGTAAGCATAATACTTGGGAGGCAGGA  1033

seq1  AGAGGATCAAGTTCAAAGCCAGCATCAATCACATAATGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCAAGTTCAAAGCCAGCATCAATCACATAATGAATTC  1076