BAC Information

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BAC

Clone NameB6Ng01-134N12
Chromosome3 (Build37)
Map Location 102,250,630 - 102,352,359
singlet/doubletdoublet
Overlap geneNgfb
Upstream geneIgsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633
Downstream geneTspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134N12.bB6Ng01-134N12.g
ACCDH935039DH935040
length1,052996
definitionDH935039|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N12, 5' end.DH935040|Mus musculus domesticus DNA, BAC clone: B6Ng01-134N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,250,630 - 102,251,687)(102,351,756 - 102,352,359)
sequence
gaattctgtggtccagacttggtttcaggctccatgctcccagagtcagc
taaagtacaagggggaaaagaaagtagtgggggaaattagattcttgatt
tgtgtccagatggtcctagccgaaaatagactcagagattctcactgcag
acttgcctctggtatgacactcccctcccccttcatctgaggtcttcttg
gtaagagagggaatgggaaaagcactgggaacattcttttctctttttcc
cagccgtgtattaaaaggcccgtgcaggttccagtccagggcttctgtgg
aacaccaagagctgcagtgtccacaatggcctagggtgatgtgattttaa
ccaacttggcctgaaggccatcccaggcgtgtgtggcagcaggggagcac
agcagtagctggccctgcagtgagggttcattcaggcctgccaccagcac
agtggcccactcacattcccctgggcatcctattccagaagcttaaaagc
aaggagacaagatctgtcccagccagcactttccaggtagagcaacatct
cacagagctactcactcaggagaagggtacggcttttcttgtccctgcca
gaatatcagtttagaagcaaaaggatcagggccatctgtgaggacagcac
agggagtcttgagggcatttgcccactagaaaaactggaagttcatggct
cacctcaaattctacaagatatgaactcgttaacaaaaaaatcaatctga
cacctagagtctagcatcagtcacttgaaggccacacacccttttggaca
atcactatcacagaatcccttttggacaaagactatcacagaattcctgt
catttcttgatgcttctttgttgggaactacatccatgctagatatcaca
cagggtagatgtctgctctaaagtctaagatacccttcctctgacggaca
atgtaacttttggtcttggatgccagtaaataaagagtggtcagtgaaag
tactttaaaaaaaagaaggaaggaatttccctaagtcttttacagtgatt
tc
gaattctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagg
cacatgtagacatgcatatggaagctgaaggtccatactgagtgtcttct
tcaattgttttgtcatcttatttgttgaggcagtctatctcattgaactc
agagctcactgactggctacgtgagccgggcagcaatttcaaggtcctct
tgctggtgcctccacagagctggaattgcacgtgtgtgctgtcccactcg
tgtttgaatgtgggctctggggacctgagctcaagtcttcagcaggcact
tttctgcctcaggccctctccctctgggagttttaggccatcttctccta
gtgtcattacacggtcttctgttgatagctatgtcctagttttcctcttt
gtaaggacactgatcgtcttggattaggactgatcctaataattgacatc
gtctcaacttctctttaaggaaaccattctgtagggcagagacttcagca
catgcgtgggtttggggaaagtttgccaaataacaaaactcttagctcgt
ctgtccactaaccagtaggaagggtgctgaagagtcatagccttctagcg
aatatctcaggaccacacagctaatggtgtgacctgccttttctctagag
ttctgaattttaaaaattgtacctctgtttctttgtgatacatctttggt
cacagcctcaacattgatgacaggtttggaagcactactgctttgcccta
caattttctgaatcatgaaccctagattcaggtgggctccctccctcctc
tttgtcagcccaccccactctttctccattcaattctgtgaacaaatggg
agccagctttttcctccttctgagggtcaactccacccctggatgctggc
tttccggtgccacatttcctacatttcctaccatttctaactttcctaat
ttccctcttttctgcgagccaggctactgccatgtggacaaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_102250630_102251687
seq2: B6Ng01-134N12.b_49_1100

seq1  GAATTCTGTGGTCCAGACTTGGTTTCAGGCTCCATGCTCCCAGAGTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTCCAGACTTGGTTTCAGGCTCCATGCTCCCAGAGTCAGC  50

seq1  TAAAGTACAAGGGGGAAAAGAAAGTAGTGGGGGAAATTAGATTCTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACAAGGGGGAAAAGAAAGTAGTGGGGGAAATTAGATTCTTGATT  100

seq1  TGTGTCCAGATGGTCCTAGCCGAAAATAGACTCAGAGATTCTCACTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCAGATGGTCCTAGCCGAAAATAGACTCAGAGATTCTCACTGCAG  150

seq1  ACTTGCCTCTGGTATGACACTCCCCTCCCCCTTCATCTGAGGTCTTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTCTGGTATGACACTCCCCTCCCCCTTCATCTGAGGTCTTCTTG  200

seq1  GTAAGAGAGGGAATGGGAAAAGCACTGGGAACATTCTTTTCTCTTTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGAGGGAATGGGAAAAGCACTGGGAACATTCTTTTCTCTTTTTCC  250

seq1  CAGCCGTGTATTAAAAGGCCCGTGCAGGTTCCAGTCCAGGGCTTCTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGTGTATTAAAAGGCCCGTGCAGGTTCCAGTCCAGGGCTTCTGTGG  300

seq1  AACACCAAGAGCTGCAGTGTCCACAATGGCCTAGGGTGATGTGATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGAGCTGCAGTGTCCACAATGGCCTAGGGTGATGTGATTTTAA  350

seq1  CCAACTTGGCCTGAAGGCCATCCCAGGCGTGTGTGGCAGCAGGGGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGGCCTGAAGGCCATCCCAGGCGTGTGTGGCAGCAGGGGAGCAC  400

seq1  AGCAGTAGCTGGCCCTGCAGTGAGGGTTCATTCAGGCCTGCCACCAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGCTGGCCCTGCAGTGAGGGTTCATTCAGGCCTGCCACCAGCAC  450

seq1  AGTGGCCCACTCACATTCCCCTGGGCATCCTATTCCAGAAGCTTAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCACTCACATTCCCCTGGGCATCCTATTCCAGAAGCTTAAAAGC  500

seq1  AAGGAGACAAGATCTGTCCCAGCCAGCACTTTCCAGGTAGAGCAACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACAAGATCTGTCCCAGCCAGCACTTTCCAGGTAGAGCAACATCT  550

seq1  CACAGAGCTACTCACTCAGGAGAAGGGTACGGCTTTTCTTGTCCCTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTACTCACTCAGGAGAAGGGTACGGCTTTTCTTGTCCCTGCCA  600

seq1  GAATATCAGTTTAGAAGCAAAAGGATCAGGGCCATCTGTGAGGACAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCAGTTTAGAAGCAAAAGGATCAGGGCCATCTGTGAGGACAGCAC  650

seq1  AGGGAGTCTTGAGGGCATTTGCCCACTAGAAAAACTGGAAGTTCATGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCTTGAGGGCATTTGCCCACTAGAAAAACTGGAAGTTCATGGCT  700

seq1  CACCTCAAATTCTACAAGATATGAACTCGTTAACAAAAAAATCAATCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAAATTCTACAAGATATGAACTCGTTAACAAAAAAATCAATCTGA  750

seq1  CACCTAGAGTCTAGCATCAGTCACTTGAAGGCCACACACCCTTTTGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGAGTCTAGCATCAGTCACTTGAAGGCCACACACCCTTTTGGACA  800

seq1  ATCACTATCACAGAATTCCCTTTTGGACAAAGACTATCACAGAATTCCTG  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCACTATCACAGAA-TCCCTTTTGGACAAAGACTATCACAGAATTCCTG  849

seq1  TCATTTCTTGATGCTTCTTTGTTGGAAACTACATCCATGCTAGATATCAC  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCATTTCTTGATGCTTCTTTGTTGGGAACTACATCCATGCTAGATATCAC  899

seq1  ACAGGGTAGATGTCTGCCCTAAAGTCTAAGATACCC-TCCTCTGACGGAC  949
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  ACAGGGTAGATGTCTGCTCTAAAGTCTAAGATACCCTTCCTCTGACGGAC  949

seq1  AATGTAACTTTTGGTCTTGGATGCCAGTAAAATAAAGAGTGGTCAGGTGA  999
      |||||||||||||||||||||||||||| |||||||||||||||| ||| 
seq2  AATGTAACTTTTGGTCTTGGATGCCAGT-AAATAAAGAGTGGTCA-GTG-  996

seq1  AAAGTACTTTAAAAAAAAGAAAGAAAGAAATTCCCCTAAGTCTTTTACAG  1049
      ||||||||||||||||||| ||| ||| |||| |||||||||||||||||
seq2  AAAGTACTTTAAAAAAAAG-AAGGAAGGAATTTCCCTAAGTCTTTTACAG  1045

seq1  TTGGATTTC  1058
      |  ||||||
seq2  T--GATTTC  1052

seq1: chr3_102351756_102352359
seq2: B6Ng01-134N12.g_463_1064 (reverse)

seq1  TGTAGTTTGCCACAATGGCAAGTAGCATTGGCTCGCAGAAAAGAGGGAAA  50
      |||| ||  |||| ||||| ||||||  ||||||||||||||||||||||
seq2  TGTATTTGTCCAC-ATGGC-AGTAGC-CTGGCTCGCAGAAAAGAGGGAAA  47

seq1  TGTAGGAAACGTAGGAAATGTAGGAAATGTAGGAAATGTAGGCA-CGGAA  99
      | |||||||  ||| ||  |||||||||||||||||||| |||| |||||
seq2  T-TAGGAAAGTTAGAAATGGTAGGAAATGTAGGAAATGT-GGCACCGGAA  95

seq1  AGCCAGCATCAAGGGCT-GAGCTGAACCCTCAAGATGGAGGGAAAAGCT-  147
      |||||||||| |||| | ||| || |||||| ||| ||||| ||||||| 
seq2  AGCCAGCATCCAGGGGTGGAGTTG-ACCCTC-AGAAGGAGGAAAAAGCTG  143

seq1  GCTCCATTTTGTTCACAGAATTGAATGGATGAAAGAGTGGGGTGGGCTTG  197
      |||||  |||||||||||||||||||||| ||||||||||||||||| ||
seq2  GCTCCCATTTGTTCACAGAATTGAATGGA-GAAAGAGTGGGGTGGGC-TG  191

seq1  ACAAGGA-GAGGGAGGGAG-CCACCTGAATCTAGGGCTACATGATTCAG-  244
      |||| || ||||||||||| |||||||||||||||| | |||||||||| 
seq2  ACAAAGAGGAGGGAGGGAGCCCACCTGAATCTAGGG-TTCATGATTCAGA  240

seq1  AAATTGTAGGGCAAAGCAGTAGTGCTTCCAACCCTGTCATCAATGTTGAG  294
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAATTGTAGGGCAAAGCAGTAGTGCTTCCAAACCTGTCATCAATGTTGAG  290

seq1  GCTGTGACCAAAGATGTATCACAAAG-AACAGAGGTACAATTTTTAAAAT  343
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTGTGACCAAAGATGTATCACAAAGAAACAGAGGTACAATTTTTAAAAT  340

seq1  TCAGAACTCTAGAG-AAAGGCAGGTCACACCATTAGCTGTGTGGTCCTGA  392
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAGAACTCTAGAGAAAAGGCAGGTCACACCATTAGCTGTGTGGTCCTGA  390

seq1  GATATTCGCTAGAAGGCTATGACTCTTCAGCACCCTTCCTACTGGTTAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCGCTAGAAGGCTATGACTCTTCAGCACCCTTCCTACTGGTTAGT  440

seq1  GGACAGACGAGCTAAGAGTTTTGTTATTTGGCAAACTTTCCCCAAACCCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACGAGCTAAGAGTTTTGTTATTTGGCAAACTTTCCCCAAACCCA  490

seq1  CGCATGTGCTGAAGTCTCTGCCCTACAGAATGGTTTCCTTAAAGAGAAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGTGCTGAAGTCTCTGCCCTACAGAATGGTTTCCTTAAAGAGAAGT  540

seq1  TGAGACGATGTCAATTATTAGGATCAGTCCTAATCCAAGACGATCAGTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACGATGTCAATTATTAGGATCAGTCCTAATCCAAGACGATCAGTGT  590

seq1  CCTTACAAAGAG  604
      ||||||||||||
seq2  CCTTACAAAGAG  602