BAC Information

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BAC

Clone NameB6Ng01-134P01
Chromosome3 (Build37)
Map Location 146,570,192 - 146,724,138
singlet/doubletdoublet
Overlap geneTtll7
Upstream geneBcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540
Downstream genePpia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134P01.bB6Ng01-134P01.g
ACCDH935113DH935114
length1,0801,102
definitionDH935113|Mus musculus domesticus DNA, BAC clone: B6Ng01-134P01, 5' end.DH935114|Mus musculus domesticus DNA, BAC clone: B6Ng01-134P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,570,192 - 146,571,263)(146,723,031 - 146,724,138)
sequence
gaattcttttccagtttaaagtaaacagtgccaacaaacaggaggtgtgg
tgctacctcctgtgtctgacgcaagattatcatgagtttcatccaatatg
ggctacacagtgagttccaggttatccagtgagatcatattccaaaacaa
acaaacaaacacacacacacacacacacacacacacacacacacacacac
aaacataccacacaaacaggctccatctaaattagcaaaataacatgaaa
agtctaaaacacaaatgccataaacagggccagctctgtctcacacttgc
tcttaagacatctgtagacagcatgaagacagcatgtagatatctgtaga
caccatgtagacatcaaaatcatgtacatatctagagatatcatatagat
atctgtggacagcgtgtagacagcatgtagacagcatgtaaacatctata
gacagtgacagtatgtagaaatctatagacagcatgtagatctctgtaga
taccatgtagacatcatacagacatcatgtagacatctgtagacacatat
agacattatgtagacatctgtggacagcatgtagacaccatgtaggcagc
cttatcaaatacgtggtggccacctggtgcttccaggtgctctgcctgtc
aagccatcctgcagtactaacattcatggtcttcttgaaagaaatgtgcc
actttatctcactggaaacatatttaagcaacccaagtcatcagttggta
cagttttggaggtttgtgtttttaattagcatatattaattatatattat
aatgggcttcattatgacatttttcacatattgcatatgacaggttttga
tcatattttcccccagtgctcttttcttgcgctcctcaacaccctctttc
acaccctctctcttcctaacttccttcttttaatacatgcatgtctgctg
gtctatctaccaatcaaccatctatctaatcaccatcatctatctatttt
agttcattgttgttccttacatggccataaggaagggcttgttttacagg
agcataaggcaccttacctagctagcctct
gaattccataattcttgaaagcatggtttgcaccagtttcaagagcatct
gtgagctaattcgtgtctatgtatcgggattatttccaaaaaaataaaaa
taaataaaaaataagaggagtagttggtcaattatatttatcactgtttt
atttataatgggaaaatgtcaagataacctgctatgaagaataggaaggt
gaataaacacggtgcagctggcatcgttagaagtggctgccgttagtcct
gtggtgtagtgatttagctttctcttttgcaacacgaactgtggagcaaa
cactctgtcagtcctcatgtacacagttcctcatttagtcttcacagtga
cccatgtgatgccaccctgttcctgggacagtggagaaaaactaagccca
aggaaaatggcacatcctacgctgcacagagaggattcgagcagggataa
ttcggccccacagttggtgttgctagtcgtttctataccattcagtgtct
ccactgtacagttaaaactgtagggagccatggtgactcgcttttcattg
gacctacagagcgacgaaaaggagaggacaaaggagagaagtaaagattg
ataaaccaaaaaaatgacattgtgctagctgcctgtcactgtgtgactaa
attgcccctcccccaaagtttatcgtgaaacaataatcatttcttaggtc
agtctccgcagtcaggattgtgggagtggcttactggatgggggtttatt
ccggggacatgctggagctgatgaattggacttcaagtgtcagctgcttg
gagcatgggacgggtctctgttagggacggctgactcaggaaagccctcc
tctttgtcttttgctaagaagccttgacacatgggacacatgttgcaaaa
atggcagccagaatcccttgagagagagaagagacacaaatcttccctgg
tggccaagcttagaagtcacgtatttttatttccagaacattctaatgtt
aaattgattcttcgagtattgctcttcatccaggaagggagatttgcttc
taattgtcagagaggactttatgaagaatcaagctgcagtggggatgcac
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146570192_146571263
seq2: B6Ng01-134P01.b_45_1124

seq1  GAATTCTTTTCCAGTTTAAAGTAAACAGTGCCAACAAACAGGAGGTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCAGTTTAAAGTAAACAGTGCCAACAAACAGGAGGTGTGG  50

seq1  TGCTACCTCCTGTGTCTGACGCAAGATTATCATGAGTTTCATCCAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCTCCTGTGTCTGACGCAAGATTATCATGAGTTTCATCCAATATG  100

seq1  GGCTACACAGTGAGTTCCAGGTTATCCAGTGAGATCATATTCCAAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGTGAGTTCCAGGTTATCCAGTGAGATCATATTCCAAAACAA  150

seq1  ACAAACAAACACACACACACACACACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACACACACACACACACACACACACACACACACACACACACAC  200

seq1  AAACATACCACACAAACAGGCTCCATCTAAATTAGCAAAATAACATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACCACACAAACAGGCTCCATCTAAATTAGCAAAATAACATGAAA  250

seq1  AGTCTAAAACACAAATGCCATAAACAGGGCCAGCTCTGTCTCACACTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAACACAAATGCCATAAACAGGGCCAGCTCTGTCTCACACTTGC  300

seq1  TCTTAAGACATCTGTAGACAGCATGAAGACAGCATGTAGATATCTGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGACATCTGTAGACAGCATGAAGACAGCATGTAGATATCTGTAGA  350

seq1  CACCATGTAGACATCAAAATCATGTACATATCTAGAGATATCATATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTAGACATCAAAATCATGTACATATCTAGAGATATCATATAGAT  400

seq1  ATCTGTGGACAGCGTGTAGACAGCATGTAGACAGCATGTAAACATCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGACAGCGTGTAGACAGCATGTAGACAGCATGTAAACATCTATA  450

seq1  GACAGTGACAGTATGTAGAAATCTATAGACAGCATGTAGATCTCTGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGACAGTATGTAGAAATCTATAGACAGCATGTAGATCTCTGTAGA  500

seq1  TACCATGTAGACATCATACAGACATCATGTAGACATCTGTAGACACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTAGACATCATACAGACATCATGTAGACATCTGTAGACACATAT  550

seq1  AGACATTATGTAGACATCTGTGGACAGCATGTAGACACCATGTAGGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTATGTAGACATCTGTGGACAGCATGTAGACACCATGTAGGCAGC  600

seq1  CTTATCAAATACGTGGTGGCCACCTGGTGCTTCCAGGTGCTCTGCCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAAATACGTGGTGGCCACCTGGTGCTTCCAGGTGCTCTGCCTGTC  650

seq1  AAGCCATCCTGCAGTACTAACATTCATGGTCTTCTTGAAAGAAATGTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCCTGCAGTACTAACATTCATGGTCTTCTTGAAAGAAATGTGCC  700

seq1  ACTTTATCTCACTGG-AACATATTTAAGCAACCCAAGTCATCAGTTGGTA  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTTTATCTCACTGGAAACATATTTAAGCAACCCAAGTCATCAGTTGGTA  750

seq1  CAG-TTTGGAGGTTTGTGTTTTTAATTAGCATATATTAATTATATATTAT  798
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGGAGGTTTGTGTTTTTAATTAGCATATATTAATTATATATTAT  800

seq1  AATGGGCTTCATTATGACA-TTTTCACATA-TGCATATGACAGGTTTTGA  846
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  AATGGGCTTCATTATGACATTTTTCACATATTGCATATGACAGGTTTTGA  850

seq1  TCATA-TTTCCCCCAGTGCTC-TTTCTTGCGCTCCTC-ACACCCTCTTTC  893
      ||||| ||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TCATATTTTCCCCCAGTGCTCTTTTCTTGCGCTCCTCAACACCCTCTTTC  900

seq1  ACACCCTCTCTCTTCCTAACTTCCTTCTTTT-ATACATGCATGTCTGTCT  942
      ||||||||||||||||||||||||||||||| |||||||||||||||   
seq2  ACACCCTCTCTCTTCCTAACTTCCTTCTTTTAATACATGCATGTCTGCTG  950

seq1  GTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  992
      ||||||||| | ||| | | |||||||||  |  | ||| ||||||||||
seq2  GTCTATCTACCAATC-AACCATCTATCTA-ATCACCATC-ATCTATCTAT  997

seq1  TTTAGTTTCATTG-TGTTCCTTACATGGCCATAGGGAAGGGCTTG-TTTA  1040
      ||||| ||||||| ||||||||||||||||||| ||||||||||| ||||
seq2  TTTAG-TTCATTGTTGTTCCTTACATGGCCATAAGGAAGGGCTTGTTTTA  1046

seq1  CAGGAGCAT-AGGCACCTTA-CTAGCTAGCCTCT  1072
      ||||||||| |||||||||| |||||||||||||
seq2  CAGGAGCATAAGGCACCTTACCTAGCTAGCCTCT  1080

seq1: chr3_146723031_146724138
seq2: B6Ng01-134P01.g_69_1170 (reverse)

seq1  GTGTGCATCCCCCACTGCCAGCCTATGAATTCTTC-TATAGTCCTCCTCT  49
      |||||||| |||||||| ||||   |  ||||||| || |||||| ||||
seq2  GTGTGCAT-CCCCACTG-CAGC---TTGATTCTTCATAAAGTCCT-CTCT  44

seq1  GACAATGTAGAAACCAATTCTCCTTTCCTTGAGTGAGAGCCATACTCGGA  99
      |||||| ||| || ||| ||||| ||||| ||   ||||| ||||||| |
seq2  GACAAT-TAG-AAGCAAATCTCCCTTCCTGGATGAAGAGCAATACTCGAA  92

seq1  GAATCAATTTTAACATTAGAATGTTCTGGAAATAAAAATACGTGACTTCT  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAA-TTTAACATTAGAATGTTCTGGAAATAAAAATACGTGACTTCT  141

seq1  TAGCTTTGGCCA-CAGGG-AGATTTGTGTCTCTTCTCTGCTCTCAA-GGA  196
       ||| ||||||| ||||| ||||||||||||||||||| ||||||| |||
seq2  AAGC-TTGGCCACCAGGGAAGATTTGTGTCTCTTCTCT-CTCTCAAGGGA  189

seq1  ATCTGGCTGCCA-TTTTGCAACATGTGTCCCATGTGTCAAGGCTTCTTAG  245
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTGCCATTTTTGCAACATGTGTCCCATGTGTCAAGGCTTCTTAG  239

seq1  CAAAAGACAAAGAGGAGGGCTTTCCTGAGTCAGCCGTCCCTAACAGAGAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACAAAGAGGAGGGCTTTCCTGAGTCAGCCGTCCCTAACAGAGAC  289

seq1  CCGTCCCATGCTCCAAGCAGCTGACACTTGAAGTCCAATTCATCAGCTCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCCATGCTCCAAGCAGCTGACACTTGAAGTCCAATTCATCAGCTCC  339

seq1  AGCATGTCCCCGGAATAAACCCCCATCCAGTAAGCCACTCCCACAATCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTCCCCGGAATAAACCCCCATCCAGTAAGCCACTCCCACAATCCT  389

seq1  GACTGCGGAGACTGACCTAAGAAATGATTATTGTTTCACGATAAACTTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCGGAGACTGACCTAAGAAATGATTATTGTTTCACGATAAACTTTG  439

seq1  GGGGAGGGGCAATTTAGTCACACAGTGACAGGCAGCTAGCACAATGTCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGCAATTTAGTCACACAGTGACAGGCAGCTAGCACAATGTCAT  489

seq1  TTTTTTGGTTTATCAATCTTTACTTCTCTCCTTTGTCCTCTCCTTTTCGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTATCAATCTTTACTTCTCTCCTTTGTCCTCTCCTTTTCGT  539

seq1  CGCTCTGTAGGTCCAATGAAAAGCGAGTCACCATGGCTCCCTACAGTTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGTAGGTCCAATGAAAAGCGAGTCACCATGGCTCCCTACAGTTTT  589

seq1  AACTGTACAGTGGAGACACTGAATGGTATAGAAACGACTAGCAACACCAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACAGTGGAGACACTGAATGGTATAGAAACGACTAGCAACACCAA  639

seq1  CTGTGGGGCCGAATTATCCCTGCTCGAATCCTCTCTGTGCAGCGTAGGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGCCGAATTATCCCTGCTCGAATCCTCTCTGTGCAGCGTAGGAT  689

seq1  GTGCCATTTTCCTTGGGCTTAGTTTTTCTCCACTGTCCCAGGAACAGGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTTTCCTTGGGCTTAGTTTTTCTCCACTGTCCCAGGAACAGGGT  739

seq1  GGCATCACATGGGTCACTGTGAAGACTAAATGAGGAACTGTGTACATGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCACATGGGTCACTGTGAAGACTAAATGAGGAACTGTGTACATGAG  789

seq1  GACTGACAGAGTGTTTGCTCCACAGTTCGTGTTGCAAAAGAGAAAGCTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACAGAGTGTTTGCTCCACAGTTCGTGTTGCAAAAGAGAAAGCTAA  839

seq1  ATCACTACACCACAGGACTAACGGCAGCCACTTCTAACGATGCCAGCTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTACACCACAGGACTAACGGCAGCCACTTCTAACGATGCCAGCTGC  889

seq1  ACCGTGTTTATTCACCTTCCTATTCTTCATAGCAGGTTATCTTGACATTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGTTTATTCACCTTCCTATTCTTCATAGCAGGTTATCTTGACATTT  939

seq1  TCCCATTATAAATAAAACAGTGATAAATATAATTGACCAACTACTCCTCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTATAAATAAAACAGTGATAAATATAATTGACCAACTACTCCTCT  989

seq1  TATTTTTTATTTATTTTTATTTTTTTGGAAATAATCCCGATACATAGACA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATTTATTTTTATTTTTTTGGAAATAATCCCGATACATAGACA  1039

seq1  CGAATTAGCTCACAGATGCTCTTGAAACTGGTGCAAACCATGCTTTCAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTAGCTCACAGATGCTCTTGAAACTGGTGCAAACCATGCTTTCAAG  1089

seq1  AATTATGGAATTC  1108
      |||||||||||||
seq2  AATTATGGAATTC  1102