BAC Information

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BAC

Clone NameB6Ng01-135D01
Chromosome3 (Build37)
Map Location 89,418,704 - 89,572,916
singlet/doubletdoublet
Overlap geneKcnn3, LOC668078, Adar, Chrnb2
Upstream geneArhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk
Downstream geneUbe2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135D01.bB6Ng01-135D01.g
ACCDH935294DH935295
length2831,098
definitionDH935294|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D01, 5' end.DH935295|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,572,628 - 89,572,916)(89,418,704 - 89,419,817)
sequence
atgttcaactcccttctctttgtcagctagccctgtgctttctcagcctc
agttggctttctaggttttaaatctcctgttcccagaaatccaagaggca
accaacactgaagatcacaggggccggcagttctttttcgcaaagaattc
ttaaaaggccagttgactagcaggggggatcctttaaaggcccaggctca
caagacaaatctcactacaacagagggcttgctgagcatgtacaataaat
aatacagcccaagaatgcttattcttatgaaaa
gaattcactctgtagaccaggctagcctcgaactcagagagatccacctg
cctcagcctcccaagtgctgggattaaaggcataggacaccaatgcccag
ttccaacctacattcttgttctctgttggtgattggtgaagctctgaggc
aggagaagagaggaacaatgggcattgttcaatgccattgggcaatgggc
aatgggtgtgacttgagatggcaatggacgtgactggaggaaagcagttt
ggagcttgtctccaggatgaggctcatcaaggaagcccccatgctgagct
gagcagagcttagccaaaaagagcttaagaatggggcttgagactgtggt
ggtagtggtggggccttcgctgaagcacacactccactgtggactgcggt
gtcggggccttcggtgaggcacacaccccactgtggaccttgcacaaaga
taagtgggaactctgagaaaatagtaagcacttctagacatagctatttt
atctaagataatttgagttaagcctgtatttaatatacaggtgttcaaca
cacacacacacacacacacacacacacacacacacatgcagggtggtata
tactgaaaattattttactgttagaagtctgtgcttttaagtgtttgtaa
atgactggttgaggcaactggatgatgaatcaggagggattccatgcgtt
gggggcggggcgggggcggggctcacctctagtcccaccgttagctgggg
gaaatgagaagttggtcttctttaccagaaaccagtcagggtggtcctgc
tcctcagtaaggaatagaaaaattaccccgaagatgcaaaagaacatgaa
ttatggggtacccaagcagccttggaagacgagaattgcctcaaagtgcg
agaaagaggagtcctctgttacgaagagacagcagtcgaggattgataca
cacctgcacgtgctcgagcaccgactttgtgaaaaagaaaatccccattc
gtgatgatgactttctcaatgtgaggtggaggccagctaaaagctcccag
agggccagaagagtgtctcatggggttagagcctgggaaccatggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89572628_89572916
seq2: B6Ng01-135D01.b_50_332 (reverse)

seq1  TTTTCATCTGAGTAAGCATTCTTGGGCTGTATTATTTATTGTACATGCTC  50
      |||||||  || ||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAAGAATAAGCATTCTTGGGCTGTATTATTTATTGTACATGCTC  50

seq1  AGCAAGCCCTCTGTTGTAGTGTGATTTGTCTTGTGAGCCTGGGCCTTTAA  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCAAGCCCTCTGTTGTAGTGAGATTTGTCTTGTGAGCCTGGGCCTTTAA  100

seq1  AGGATCCCTAGTTGCTAGTCAACTGGCCTTTTAAGAATTCTTAGC-TGTT  149
      ||||||||    |||||||||||||||||||||||||||||| ||     
seq2  AGGATCCC-CCCTGCTAGTCAACTGGCCTTTTAAGAATTCTTTGCGAAAA  149

seq1  AGAACTGCCGGACCCTGTGATCTTCAGTGTTGGTTGCCTCTTGGATTTCT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCCGGCCCCTGTGATCTTCAGTGTTGGTTGCCTCTTGGATTTCT  199

seq1  GGGAACAGGAGATTTAAAAAAAAAAAAAAAGCCAACTGAGGCTGAGAAAG  249
      |||||||||||||||   ||||   | |||||||||||||||||||||||
seq2  GGGAACAGGAGATTT---AAAACCTAGAAAGCCAACTGAGGCTGAGAAAG  246

seq1  CACAGGGCTAGCAGAGGGAAAAGAGAAGGGAGTTGAACAT  289
      |||||||||||| ||    |||||||||||||||||||||
seq2  CACAGGGCTAGCTGA---CAAAGAGAAGGGAGTTGAACAT  283

seq1: chr3_89418704_89419817
seq2: B6Ng01-135D01.g_67_1164

seq1  GAATTCACTCTGTAGACCAGGCTAGCCTCGAACTCAGAGAGATCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTAGCCTCGAACTCAGAGAGATCCACCTG  50

seq1  CCTCAGCCTCCCAAGTGCTGGGATTAAAGGCATAGGACACCAATGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCTCCCAAGTGCTGGGATTAAAGGCATAGGACACCAATGCCCAG  100

seq1  TTCCAACCTACATTCTTGTTCTCTGTTGGTGATTGGTGAAGCTCTGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACCTACATTCTTGTTCTCTGTTGGTGATTGGTGAAGCTCTGAGGC  150

seq1  AGGAGAAGAGAGGAACAATGGGCATTGTTCAATGCCATTGGGCAATGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGAGAGGAACAATGGGCATTGTTCAATGCCATTGGGCAATGGGC  200

seq1  AATGGGTGTGACTTGAGATGGCAATGGACGTGACTGGAGGAAAGCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTGTGACTTGAGATGGCAATGGACGTGACTGGAGGAAAGCAGTTT  250

seq1  GGAGCTTGTCTCCAGGATGAGGCTCATCAAGGAAGCCCCCATGCTGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGTCTCCAGGATGAGGCTCATCAAGGAAGCCCCCATGCTGAGCT  300

seq1  GAGCAGAGCTTAGCCAAAAAGAGCTTAAGAATGGGGCTTGAGACTGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGCTTAGCCAAAAAGAGCTTAAGAATGGGGCTTGAGACTGTGGT  350

seq1  GGTAGTGGTGGGGCCTTCGCTGAAGCACACACTCCACTGTGGACTGCGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGGTGGGGCCTTCGCTGAAGCACACACTCCACTGTGGACTGCGGT  400

seq1  GTCGGGGCCTTCGGTGAGGCACACACCCCACTGTGGACCTTGCACAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGGCCTTCGGTGAGGCACACACCCCACTGTGGACCTTGCACAAAGA  450

seq1  TAAGTGGGAACTCTGAGAAAATAGTAAGCACTTCTAGACATAGCTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGGAACTCTGAGAAAATAGTAAGCACTTCTAGACATAGCTATTTT  500

seq1  ATCTAAGATAATTTGAGTTAAGCCTGTATTTAATATACAGGTGTTCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGATAATTTGAGTTAAGCCTGTATTTAATATACAGGTGTTCAACA  550

seq1  CACACACACACACACACACACACACACACACACACATGCAGGGTGGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACATGCAGGGTGGTATA  600

seq1  TACTGAAAATTATTTTACTGTTAGAAGTCTGTGCTTTTAAGTGTTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAATTATTTTACTGTTAGAAGTCTGTGCTTTTAAGTGTTTGTAA  650

seq1  ATGACTGGTTGAGGCAACTGGATGATGAATCAGGAGGGATTCCATGCGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGTTGAGGCAACTGGATGATGAATCAGGAGGGATTCCATGCGTT  700

seq1  GGGGGCGGGGCGGGGGCGGGGCTCACCTCTAGTCCCACCGTTAGCTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCGGGGCGGGGGCGGGGCTCACCTCTAGTCCCACCGTTAGCTGGGG  750

seq1  GAAATGAGAAGTTGGTCTTCTTTACCAGAAACCAGTCAGGGTGGTCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGAAGTTGGTCTTCTTTACCAGAAACCAGTCAGGGTGGTCCTGC  800

seq1  TCCTCAGTAAGGAATAGAAAAATTACCCCGAAGATGCAAAAGAACATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTAAGGAATAGAAAAATTACCCCGAAGATGCAAAAGAACATGAA  850

seq1  TTATGGGGTACCCAAAGCAGCCTTGGAAGACGAGATATGCCTCAAAGTGC  900
      ||||||||||||| |||||||||||||||||||||  |||||||||||||
seq2  TTATGGGGTACCC-AAGCAGCCTTGGAAGACGAGAATTGCCTCAAAGTGC  899

seq1  GAGAAAGAAGCAGT-CTCTGTTACGAAGAAGACAGCAGTCGAGGAATGAA  949
      ||||||| || ||| ||||||||||||| |||||||||||||||| || |
seq2  GAGAAAG-AGGAGTCCTCTGTTACGAAG-AGACAGCAGTCGAGGATTG-A  946

seq1  AACACACCTGCACGTGCTCAGAGCACCGACTTTGTGAAAAAGAAAATCCC  999
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACACACCTGCACGTGCTC-GAGCACCGACTTTGTGAAAAAGAAAATCCC  995

seq1  CATTCGTGATGATGACTTTCTTCAAATGTAGAAAGTGGAGGGCCAGCTAA  1049
      |||||||||||||||||||||   |||||   | ||||| |||||||| |
seq2  CATTCGTGATGATGACTTTCT--CAATGT--GAGGTGGA-GGCCAGCT-A  1039

seq1  AAAGCTTCCCCAGAGGGCCAGAGAGAGTG-CTCATGGGAGTTAGAGCTCT  1098
      ||||||  |||||||||||||| |||||| |||||||| |||||||| ||
seq2  AAAGCT--CCCAGAGGGCCAGA-AGAGTGTCTCATGGG-GTTAGAGC-CT  1084

seq1  GGAACCCATGTGGTGG  1114
      || | |||  ||||||
seq2  GGGAACCA--TGGTGG  1098