BAC Information

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BAC

Clone NameB6Ng01-135D04
Chromosome3 (Build37)
Map Location 41,059,406 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135D04.bB6Ng01-135D04.g
ACCDH935300DH935301
length9891,196
definitionDH935300|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D04, 5' end.DH935301|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagcgccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatatttgtccc
ctatctgatttaggataggtaaaggtcctttcacactctgttgggggcct
ttttgtcctattgacagtgtcttttgctttgcagaagctttgcaattttt
tgaggttccttttgtcgattctagatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccgtac
tttcccctctataagtttcagtgtctctgtttttttttccattttttaat
taggtattcagctcatttacatttccaatgctataccaaaagtcccccat
acccacctaccaccactctcctacccacccactccccctttttggccctg
gcgttcctctgtactggggcatataaagtttgcgtgtccattgggcctct
ctttccagtgatggccgactaggccatcttttgatacatatgcagctaga
gtcaagagctccggtgtactggttagttcataatattgttccacctatag
ggttgcagatccctttagctccttgggtactttctctagctcctccattg
ggagccctgtgatccatccaatagctgactgtgagcatccacttctgtgt
ttgctaggccccggcatagtatcacaagagacagctacatctgggtcctt
tcgataaaatcttgctagtgtatgcaatggtgtcagcatttggatgctga
ttatggggtggatccctggatatggcagtctctacatggtccatcctttc
aactcagctccaaactttgtctctgtaactccttccatgggtgttttgtt
cccaattctaaggaggggcatagtgtccacacttcagtcttgatttttct
tgagtttcatgtgtttagtaaatgttcttatatcttggg
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatcgttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcccactagtcagaatggataagatcaaaaattcaggtaacagc
agatgctggcaagaatatggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactttggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
aaatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagatgaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttgaacctgaagggcatcatcccgagtgaggtaacacaatcacaaa
agaactctaatgatatgtactcactgataagtggatattagcccagaaac
ttagaatagtgagatataaggtacaattttgcaaaacacatgaaacgaag
aaaaagaagaacgaagaccagagtgtggacactttgccccttcttagaat
tggaaacaatcacccatggaaggagttacagagacaaagtttggagctga
gacaaaaggatggaccatctagagactgccatatccagggatcatccatc
catcccataattagcctctaaacaacgacaccattgcatatactagcaag
ttgtttgttgcaaggacagtgatatagctgtctctcgtggagactaggcc
ggggccctaccaaacacagaaagtggatgctcacagtcaactattggatg
gatcacagggcccccattgaaggaactagagaaaatttccagaagctaag
agaatcctgcaaccctgtagtgcaacaacttatgaactaactgtacccct
gagccttgactctaactgatatgtaatcaaaagaatagctcagtggccaa
taactgaaagaagaagagcctattggtcagcaatactttatgacattgaa
aatgcaactggataaaaaataaagtcataatactcatgtaccaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059406_41059737
seq2: B6Ng01-135D04.b_49_381 (reverse)

seq1  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTG  50
      |||| |||||||||||||||||||||||| ||||||  |||||||||| |
seq2  AAAAACAGAGACACTGAAACTTATAGAGGGGAAAGTACGGAAAAGCCTCG  50

seq1  AAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGT  100
      |||||||||  |||||||||||||||||| ||||||||||||||||||||
seq2  AAGATATGGGTACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGT  100

seq1  GCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTT  150
      ||||||||||  ||||| |||||| || ||||||  ||| ||||||||||
seq2  GCTGTAAGATCTAGAATCGACAAAAGGAACCTCAAAAAATTGCAAAGCTT  150

seq1  CTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATT  199
      |||||| ||||||||||| ||||||| |||||||||| | |||||||| |
seq2  CTGCAAAGCAAAAGACACTGTCAATAGGACAAAAAGGCCCCCAACAGAGT  200

seq1  GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAAT  249
      | ||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  GTGAAAGGACCTTTACCTATCCTAAATCAGATAGGGGACAAATATCCAAT  250

seq1  ATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCAT  299
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  ATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCAT  300

seq1  TAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  332
      |||||||||| ||||||||||||||||||||||
seq2  TAAAAAATGGCGCTCAGAGCTAAACAAAGAATT  333