BAC Information

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BAC

Clone NameB6Ng01-135D10
Chromosome3 (Build37)
Map Location 126,064,557 - 126,209,820
singlet/doubletdoublet
Overlap geneArsj
Upstream geneNdst4, Ugt8a
Downstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135D10.bB6Ng01-135D10.g
ACCDH935312DH935313
length1,1801,160
definitionDH935312|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D10, 5' end.DH935313|Mus musculus domesticus DNA, BAC clone: B6Ng01-135D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,064,557 - 126,065,757)(126,208,665 - 126,209,820)
sequence
gaattccaactctatggtaggaaatgccgagtccgtatttataacccaag
tacacagacaatagactcctggctgccagttgtgaccagtctgtgcttgt
tggctgggaatgatttgaaaccccatttgtaagtgaatcttttgaagaga
aggagctttgaagtcagttatacatccaaaacttctgcagaaaaaagaaa
gataacaaataaaataatatccttttccatttaaagctcactcctctgaa
gtacctcacctcctaaccgcacacatcttgcatcaggtgtgtttgcttta
taatttccttgtttttgtcttctccagaatgtcttctcacagtaacactt
ggggcctgaaggttttggttgagtgagatctttcttctccaccatagtag
agggtctaccagagtccagacatcctaatttagttcactccttgcttcca
ctgctattactggcccatctcatccactgttatcaagtggaacaatgttc
ctcggggctagtctagaataatgaagtataagaggtacttgagcatgcat
aagtgtgtccatgtttagggtacaatggttagctcacaggaagtattgca
taaatgttggcttaaagaaaattcttgccaaaaatctaaattggaaatgc
ttgttattgtcacatggaaacacagacgaccctcctgccatgttactcat
tagctctccaactgaaaatagctgggtctgttggagtgtgtacatctttt
ccactccagcacccaccccactagaccagtgaagtcggaatccctacctc
tctgtgcttttaatctcccagtagaactgactctttttaaatgtttggaa
atttaaacttagagagttgttactctcaattctaagcatgtcttctaaat
ctcacgtctctcctggaagcagccagaataagccactgcctgctcatgtt
ggcaaaattagctgcatgaaacagcattctgtctcccagtttaagtttcc
atttcacaagtttgcctgcaaagtgacaggactggtgtatagcagaagga
ataaagtacagctaatgaaacttggatatgacttagtcattatgatcttg
catgtgtatgccaggcttactagggtcaataggaaagtgttgaaacatgg
gatacatatatatatacacccgcttggcat
gaattcaaacaactttaaagtatgagaagtgttcaggttggtggataagg
gacctaaacttctttaacataggcaaagctttaaaaaaaaggtgtgtctg
tatataagactagtagaggctacagagacgtgatgggtaaggtagagaaa
tagagacagatcaatagtagtagacagtggtagagatgataaagggtaga
tgctggacaaagatagatgaatgatggacaatagaggggtgatgctgtgc
cttcattcacaacatctcatgacctacctatgaggtctttcatttgaaaa
ctatataacaatacatgtaaaataattttcatgtggaaacttttttccgt
tcttgtcatctattcatttctaccagtctttacaggatcttatccatcat
caaaatcataccagttaatggcttcactctcattgctgctcacaaattct
tgttcaggtggggtctttattatttacacacttccacaatttaattgtat
taaaattaataataatattagagatcttgaaatttcaaaactttttttga
aggaagaaagaattattaaagggataaatagaaaagtgttataggacact
tttgaaaatataactctgaaataaatttaagaaataaaaatgaatacttc
tagtctggttccttttggctcacctttaattctttcctctaaactaacac
ttctttccttgcttcttctatttgttcctccctcaaatttctccaagttt
gccacttatttctttcctgcccctcaccattccatgctctctggttacag
catcagggattaaaagctttgcacttgacatttaaaatattatctcacca
gcattatgctgtgtaacatttactaaccacaagaagagagtgagcatgaa
gtgattaaacagaaatgtctctgaactattgttgccagtagtgtaatgta
gtccattggaagtcttatggcacccagcatctggatctgatttcatttat
gcttcgaacaggaaatcactttcttgccctgaagcatttaaattttggga
agtcccacagcaatagaaagaataatggctctgcagaagagtacaaacaa
aacctctacagcatattgcttgcaggttaagggttatgaagaagagagca
ataaacctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126064557_126065757
seq2: B6Ng01-135D10.b_48_1227

seq1  GAATTCCAACTCTATGGTAGGAAATGCCGAGTCCGTATTTATAACCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCTATGGTAGGAAATGCCGAGTCCGTATTTATAACCCAAG  50

seq1  TACACAGACAATAGACTCCTGGCTGCCAGTTGTGACCAGTCTGTGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGACAATAGACTCCTGGCTGCCAGTTGTGACCAGTCTGTGCTTGT  100

seq1  TGGCTGGGAATGATTTGAAACCCCATTTGTAAGTGAATCTTTTGAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGAATGATTTGAAACCCCATTTGTAAGTGAATCTTTTGAAGAGA  150

seq1  AGGAGCTTTGAAGTCAGTTATACATCCAAAACTTCTGCAGAAAAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTTTGAAGTCAGTTATACATCCAAAACTTCTGCAGAAAAAAGAAA  200

seq1  GATAACAAATAAAATAATATCCTTTTCCATTTAAAGCTCACTCCTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAAATAAAATAATATCCTTTTCCATTTAAAGCTCACTCCTCTGAA  250

seq1  GTACCTCACCTCCTAACCGCACACATCTTGCATCAGGTGTGTTTGCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCACCTCCTAACCGCACACATCTTGCATCAGGTGTGTTTGCTTTA  300

seq1  TAATTTCCTTGTTTTTGTCTTCTCCAGAATGTCTTCTCACAGTAACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCTTGTTTTTGTCTTCTCCAGAATGTCTTCTCACAGTAACACTT  350

seq1  GGGGCCTGAAGGTTTTGGTTGAGTGAGATCTTTCTTCTCCACCATAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTGAAGGTTTTGGTTGAGTGAGATCTTTCTTCTCCACCATAGTAG  400

seq1  AGGGTCTACCAGAGTCCAGACATCCTAATTTAGTTCACTCCTTGCTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTACCAGAGTCCAGACATCCTAATTTAGTTCACTCCTTGCTTCCA  450

seq1  CTGCTATTACTGGCCCATCTCATCCACTGTTATCAAGTGGAACAATGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTACTGGCCCATCTCATCCACTGTTATCAAGTGGAACAATGTTC  500

seq1  CTCGGGGCTAGTCTAGAATAATGAAGTATAAGAGGTACTTGAGCATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGCTAGTCTAGAATAATGAAGTATAAGAGGTACTTGAGCATGCAT  550

seq1  AAGTGTGTCCATGTTTAGGGTACAATGGTTAGCTCACAGGAAGTATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTCCATGTTTAGGGTACAATGGTTAGCTCACAGGAAGTATTGCA  600

seq1  TAAATGTTGGCTTAAAGAAAATTCTTGCCAAAAATCTAAATTGGAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTGGCTTAAAGAAAATTCTTGCCAAAAATCTAAATTGGAAATGC  650

seq1  TTGTTATTGTCACATGGAAACACAGACGACCCTCCTGCCATGTTACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTGTCACATGGAAACACAGACGACCCTCCTGCCATGTTACTCAT  700

seq1  TAGCTCTCCAACTGAAAATAGCTGGGTCTGTTGGAGTGTGTACATCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTCCAACTGAAAATAGCTGGGTCTGTTGGAGTGTGTACATCTTTT  750

seq1  CCACTCCAGCACCCACCCCACTAGACCAGTGAAGTCGGAATCCCTACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCAGCACCCACCCCACTAGACCAGTGAAGTCGGAATCCCTACCTC  800

seq1  TCTGTGCTTTTAATCTCCCAGTAGAACTGACTCTTTTTAAATGTTTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTTTTAATCTCCCAGTAGAACTGACTCTTTTTAAATGTTTGGAA  850

seq1  ATTTAAACTTAGAGAGTTGTTACTCTCAATTCTAAGCATGTCTTCTAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACTTAGAGAGTTGTTACTCTCAATTCTAAGCATGTCTTCTAAAT  900

seq1  CTCAACGTCTCTCCTGGAAGCAGCCAGAATAAGCCACTGCCTGCTCATGT  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTC-ACGTCTCTCCTGGAAGCAGCCAGAATAAGCCACTGCCTGCTCATGT  949

seq1  TGGCAAAATTAGCTGCATGAAACAGCATTCTGTCTCCCAGTTTAAGTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAATTAGCTGCATGAAACAGCATTCTGTCTCCCAGTTTAAGTTTC  999

seq1  CATTTCACCAAGTTTGCCTGCAAAGTTGACAGGAACTGTGTAATAGCAGA  1050
      ||||||| ||||||||||||||||| ||||||||   |||| ||||||||
seq2  CATTTCA-CAAGTTTGCCTGCAAAG-TGACAGGACTGGTGT-ATAGCAGA  1046

seq1  AGGGAATTAAAAGTAACAGCTAAATGAAACTTGGAATTATGACTTAGTCA  1100
      | |||||  ||||| |||||| |||||||||||||  |||||||||||||
seq2  A-GGAAT--AAAGT-ACAGCT-AATGAAACTTGGA--TATGACTTAGTCA  1089

seq1  TTAATTGAATCTTGCATGTTGTATGCCAGGCTATACTAGGTGTTCAGTAA  1150
      |||  || |||||||||| ||||||||||||| ||||||  | ||| || 
seq2  TTA--TG-ATCTTGCATG-TGTATGCCAGGCT-TACTAG--GGTCAATAG  1132

seq1  GAAAGTGTTGAAAACATTGGGAATAACATATATATACACCGCTTTTGGCA  1200
      |||||||||| ||||| |||||   | ||||||||||||| |  ||||||
seq2  GAAAGTGTTG-AAACA-TGGGATACATATATATATACACC-CGCTTGGCA  1179

seq1  T  1201
      |
seq2  T  1180

seq1: chr3_126208665_126209820
seq2: B6Ng01-135D10.g_70_1229 (reverse)

seq1  ACAGGTTTATTGCTC---TCTTCATAAGCTTTAACCTGCAAGCCATATGC  47
      |||||||||||||||   ||||||||| | ||||||||||||| ||||||
seq2  ACAGGTTTATTGCTCTCTTCTTCATAACCCTTAACCTGCAAGCAATATGC  50

seq1  TGT-GAGGTCTTGTTTGTACCTCTCTGCAGAGCCATTATTCTTTCTTATG  96
      ||| ||||| ||||||||||   |||||||||||||||||||||||  ||
seq2  TGTAGAGGTTTTGTTTGTACTCTTCTGCAGAGCCATTATTCTTTCTATTG  100

seq1  CTGTGGGACTTCCCAAAATTTAAATGCCTCAGGGCAGGAAAGTGATTTCC  146
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  CTGTGGGACTTCCCAAAATTTAAATGCTTCAGGGCAAGAAAGTGATTTCC  150

seq1  TGTTCGAAGCATAAAATGAAATCAGATCCAGATGCTGGGTGCCATTAGAC  196
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  TGTTCGAAGCAT-AAATGAAATCAGATCCAGATGCTGGGTGCCATAAGAC  199

seq1  TTCCAATGGACTACATTACACTACTGGCAACAATAGTTCAGAGACATTTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGGACTACATTACACTACTGGCAACAATAGTTCAGAGACATTTC  249

seq1  TGTTTAATCACTTCATGCTCACTCTCTTCTTGTGGTTAGTAAATGTTACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATCACTTCATGCTCACTCTCTTCTTGTGGTTAGTAAATGTTACA  299

seq1  CAGCATAATGCTGGTGAGATAATATTTT-AATGTCAAGTGCAAAGCTTTT  345
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGCATAATGCTGGTGAGATAATATTTTAAATGTCAAGTGCAAAGCTTTT  349

seq1  AATCCCTGATGCTGTAACCAGAGAGCATGGAATGGTGAGGGGCAGGAAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGATGCTGTAACCAGAGAGCATGGAATGGTGAGGGGCAGGAAAG  399

seq1  AAATAAGTGGCAAACTTGGAGAAATTTGAGGGAGGAACAAATAGAAGAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTGGCAAACTTGGAGAAATTTGAGGGAGGAACAAATAGAAGAAG  449

seq1  CAAGGAAAGAAGTGTTAGTTTAGAGGAAAGAATTAAAGGTGAGCCAAAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAGAAGTGTTAGTTTAGAGGAAAGAATTAAAGGTGAGCCAAAAG  499

seq1  GAACCAGACTAGAAGTATTCATTTTTATTTCTTAAATTTATTTCAGAGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGACTAGAAGTATTCATTTTTATTTCTTAAATTTATTTCAGAGTT  549

seq1  ATATTTTCAAAAGTGTCCTATAACACTTTTCTATTTATCCCTTTAATAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAAAAGTGTCCTATAACACTTTTCTATTTATCCCTTTAATAAT  599

seq1  TCTTTCTTCCTTCAAAAAAAGTTTTGAAATTTCAAGATCTCTAATATTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCTTCAAAAAAAGTTTTGAAATTTCAAGATCTCTAATATTAT  649

seq1  TATTAATTTTAATACAATTAAATTGTGGAAGTGTGTAAATAATAAAGACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTTAATACAATTAAATTGTGGAAGTGTGTAAATAATAAAGACC  699

seq1  CCACCTGAACAAGAATTTGTGAGCAGCAATGAGAGTGAAGCCATTAACTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGAACAAGAATTTGTGAGCAGCAATGAGAGTGAAGCCATTAACTG  749

seq1  GTATGATTTTGATGATGGATAAGATCCTGTAAAGACTGGTAGAAATGAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTTTGATGATGGATAAGATCCTGTAAAGACTGGTAGAAATGAAT  799

seq1  AGATGACAAGAACGGAAAAAAGTTTCCACATGAAAATTATTTTACATGTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACAAGAACGGAAAAAAGTTTCCACATGAAAATTATTTTACATGTA  849

seq1  TTGTTATATAGTTTTCAAATGAAAGACCTCATAGGTAGGTCATGAGATGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATATAGTTTTCAAATGAAAGACCTCATAGGTAGGTCATGAGATGT  899

seq1  TGTGAATGAAGGCACAGCATCACCCCTCTATTGTCCATCATTCATCTATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGAAGGCACAGCATCACCCCTCTATTGTCCATCATTCATCTATC  949

seq1  TTTGTCCAGCATCTACCCTTTATCATCTCTACCACTGTCTACTACTATTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAGCATCTACCCTTTATCATCTCTACCACTGTCTACTACTATTG  999

seq1  ATCTGTCTCTATTTCTCTACCTTACCCATCACGTCTCTGTAGCCTCTACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTCTATTTCTCTACCTTACCCATCACGTCTCTGTAGCCTCTACT  1049

seq1  AGTCTTATATACAGACACACCTTTTTTTTAAAGCTTTGCCTATGTTAAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATATACAGACACACCTTTTTTTTAAAGCTTTGCCTATGTTAAAG  1099

seq1  AAGTTTAGGTCCCTTATCCACCAACCTGAACACTTCTCATACTTTAAAGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGGTCCCTTATCCACCAACCTGAACACTTCTCATACTTTAAAGT  1149

seq1  TGTTTGAATTC  1156
      |||||||||||
seq2  TGTTTGAATTC  1160