BAC Information

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BAC

Clone NameB6Ng01-135F16
Chromosome3 (Build37)
Map Location 18,497,356 - 18,635,908
singlet/doubletdoublet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135F16.bB6Ng01-135F16.g
ACCDH935412DH935413
length1,1161,109
definitionDH935412|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F16, 5' end.DH935413|Mus musculus domesticus DNA, BAC clone: B6Ng01-135F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,497,356 - 18,498,455)(18,634,782 - 18,635,908)
sequence
gaattcttgctggcgagatactagcttgggataagtggcgctgaaaaccc
gggaacataccatcaccaggcgctgaaaaggggacccccccccccgtttc
acggggtggattcagaactacgggacactaaagctctgtaaggtacgttc
ggtcttgaactttctccagcgttagaggccttttaaggggggcagaggat
cctggaggacgtccgagacagtctatcagagacagagcggggagagagat
taggagttaagaggaaacaaggtgcacttaagaagaaaacaggcctttcc
acggaccttgagcccaaggaaaagagaattaaggggaaaaatgccctggg
agagttcagaaaaggagaagggagagagaaaaaagaagaaatataaaaag
aaaagaaactaaaatataaagatacaaaagataatataaaatataaagat
acaaaggataatttaaaaaaagaagaagaggagtcaatttaccctcctct
cgaggactttgactaaagaggcagccttcatcaaaggcttaaagatagct
ctcagggccactgtgcctcctctcccttctctggcagtattcccagaaga
aggagataaggaagtagagtctgaacatgagagagagagaaaataagttt
tagaaaagcagttatcccctgtttgggatcttttagcaaaaaaagagaaa
aaaatgaaaataagctatttcagtgctctcctgggaacagaaggaaaacg
ggagacgtcctgcttcctctctggctcctatggagatattcttagctctg
gttaggatatctgtgtccctttgagacaccaagttctattccctgtctgt
ctattgtctgtttttggtgcaccaaattgtccatatgtctgtcaattcat
gtttgtttttggttttggtggtttcaatgattattgttctggtttatgtt
gaaaaaatatatttggttaaaactttatctgctggctgtccatcctttaa
cttgtttgaaaagcagactcaatttgcacagcagaagtggataaaagcat
tgtggctggagttcaggtacagctgaaaagccctgctgagggacgattgc
aattggagcttcttaa
gaattctggtcctcacagactataaagtcacaagatcattcatctgttca
aatgttgtacatcacagcatttattatatttgtggctgaggttttaatag
atgaaatggaatgtccaagtactctaagtcaatatgaaagttaaactaaa
gtaataagcatgtgagatttggtgggactgtcctgggagagactctaagt
tttagttatggtagcaactacagtttaataaccagcaggcatagagaagg
tcttattaacacatggtgagagctttgaccaagatgcctgtgtcagattc
agaagtaaaaactgggaggaacaatctgtgttttattttctagagactaa
gaaataaaatgagcaagttgatttaaaaggaaagaagttacgaagttaat
ccagcgactttgcttaaaataattaatactattaataataacctatggca
agaatttaaaaccacattattgatttcatgacttggagttcatgattgtg
ctactggcattatttattcacttgtaagtcaaggcatcgcaaattttggt
actaagatgtagcaaacattaaaatttggaatatattttcttcaatcaca
tagaatctctctatgggtaaagccttgatgtgaatgtgttgtttataagt
ccaacttaaaagcatttaagaaaatagtacccccagaacaggaggcacac
acgtaggcacattctcacctatagagtagttaattcgggctttagataga
tggacaatctgctgatggctatgtgaagagaggaaaaaaagaaaccccaa
agcactatgaaagtaaggagataagaagaaaaggaaataggagttttagg
aaggaaaggtagcctactaattaaaatctctgttgactaatcacttggta
acacctgccagtgggtagtcctgtgtagaatgtgatgtaagacccatctt
cactctagtcttttgggggatagtgcatgattcaagtcacagaagaaaaa
gcagttatctctgctaggttacattactcagcagatggaggaagaaatca
gcaaccaagatgtgtgctaagaagaaaaggcagaaggttatgctgatgcc
aaatgtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18497356_18498455
seq2: B6Ng01-135F16.b_61_1163

seq1  CGAGATACTAGCTTGGGATAAGTGGCGCTGAAAACCCGGGAACATACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATACTAGCTTGGGATAAGTGGCGCTGAAAACCCGGGAACATACCAT  50

seq1  CACCAGGCGCTGAAAAGGGGACCCCCCCCCCCGTTTCACGGGGTGGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCGCTGAAAAGGGGACCCCCCCCCCCGTTTCACGGGGTGGATTC  100

seq1  AGAACTACGGGACACTAAAGCTCTGTAAGGTACGTTCGGTCTTGAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACGGGACACTAAAGCTCTGTAAGGTACGTTCGGTCTTGAACTTT  150

seq1  CTCCAGCGTTAGAGGCCTTTTAAGGGGGGCAGAGGATCCTGGAGGACGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCGTTAGAGGCCTTTTAAGGGGGGCAGAGGATCCTGGAGGACGTC  200

seq1  CGAGACAGTCTATCAGAGACAGAGCGGGGAGAGAGATTAGGAGTTAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGTCTATCAGAGACAGAGCGGGGAGAGAGATTAGGAGTTAAGAG  250

seq1  GAAACAAGGTGCACTTAAGAAGAAAACAGGCCTTTCCACGGACCTTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGGTGCACTTAAGAAGAAAACAGGCCTTTCCACGGACCTTGAGC  300

seq1  CCAAGGAAAAGAGAATTAAGGGGAAAAATGCCCTGGGAGAGTTCAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAAAGAGAATTAAGGGGAAAAATGCCCTGGGAGAGTTCAGAAAA  350

seq1  GGAGAAGGGAGAGAGAAAAAAGAAGAAATATAAAAAGAAAAGAAACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGGAGAGAGAAAAAAGAAGAAATATAAAAAGAAAAGAAACTAAA  400

seq1  ATATAAAGATACAAAAGATAATATAAAATATAAAGATACAAAGGATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGATACAAAAGATAATATAAAATATAAAGATACAAAGGATAATT  450

seq1  TAAAAAAAGAAGAAGAGGAGTCAATTTACCCTCCTCTCGAGGACTTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGAAGAAGAGGAGTCAATTTACCCTCCTCTCGAGGACTTTGAC  500

seq1  TAAAGAGGCAGCCTTCATCAAAGGCTTAAAGATAGCTCTCAGGGCCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGCAGCCTTCATCAAAGGCTTAAAGATAGCTCTCAGGGCCACTG  550

seq1  TGCCTCCTCTCCCTTCTCTGGCAGTATTCCCAGAAGAAGGAGATAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTCTCCCTTCTCTGGCAGTATTCCCAGAAGAAGGAGATAAGGAA  600

seq1  GTAGAGTCTGAACATGAGAGAGAGAGAAAATAAGTTTTAGAAAAGCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTCTGAACATGAGAGAGAGAGAAAATAAGTTTTAGAAAAGCAGTT  650

seq1  ATCCCCTGTTTGGGATCTTTTAGCAAAAAAAGAGAAAAAAATGAAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGTTTGGGATCTTTTAGCAAAAAAAGAGAAAAAAATGAAAATAA  700

seq1  GCTATTTCAGTGCTCTCCTGGGAACAGAAGGAAAACGGGAGACGTCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTCAGTGCTCTCCTGGGAACAGAAGGAAAACGGGAGACGTCCTGC  750

seq1  TTCCTCTCTGGCTCCTATGGAGATATTCTTAGCTCTGGTTAGGATATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTGGCTCCTATGGAGATATTCTTAGCTCTGGTTAGGATATCTG  800

seq1  TGTCCCTTTGAGACACCAAGTTCTATTCCCTGTCTGTCTATTGTCTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTTGAGACACCAAGTTCTATTCCCTGTCTGTCTATTGTCTGTTT  850

seq1  TTGGTGCACCAAATTGTCCATATGTCTGTCAATTCATGTTTGTTTTTG--  898
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTGGTGCACCAAATTGTCCATATGTCTGTCAATTCATGTTTGTTTTTGGT  900

seq1  TTTTGTTGTTTCAATGATTATTGTTCTGTTTTATGTTG-AAAAATATAAT  947
      ||| || ||||||||||||||||||||| ||||||||| ||||||||| |
seq2  TTTGGTGGTTTCAATGATTATTGTTCTGGTTTATGTTGAAAAAATATATT  950

seq1  TGGTTAAAACTTTATCTGCTGGCTGTCCATCCTTTAACTTGTTTGAAAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAACTTTATCTGCTGGCTGTCCATCCTTTAACTTGTTTGAAAAG  1000

seq1  CAGACTCAATTTGCACAGCAGAAAGTGATAAAAGCATTGTGGCTGAGAG-  1046
      |||||||||||||||||||||||   ||||||||||||||||||| ||| 
seq2  CAGACTCAATTTGCACAGCAGAAGTGGATAAAAGCATTGTGGCTG-GAGT  1049

seq1  TCAGGTACAGCTGAAAAAGCCCTGCTGAGGGACGATTGCAAATGGAGC-T  1095
      ||||||||||||| ||||||||||||||||||||||||||| |||||| |
seq2  TCAGGTACAGCTG-AAAAGCCCTGCTGAGGGACGATTGCAATTGGAGCTT  1098

seq1  CTTAA  1100
      |||||
seq2  CTTAA  1103

seq1: chr3_18634782_18635908
seq2: B6Ng01-135F16.g_72_1180 (reverse)

seq1  ACCACATTTTTGGCATCAGCATAACCTCTCTGCCTCTTCTTCTTTAGACA  50
      ||||||  ||||||||||||||||||| ||||||| |||||| |||| ||
seq2  ACCACA--TTTGGCATCAGCATAACCT-TCTGCCTTTTCTTC-TTAG-CA  45

seq1  CACATCTTTGGTTTGCTGATTTCTCCCTCCACTCTGCTGAGTTAATTGTA  100
      ||||||||  | |||||||||||| |||||| ||||||||||  | ||||
seq2  CACATCTT--GGTTGCTGATTTCTTCCTCCA-TCTGCTGAGT--AATGTA  90

seq1  ACCTAGCAGAGGTTAACTGCCTTTTTCTTTCTGGTGACTTGAATCATGCC  150
      |||||||||| | |||||| ||||||| |||| ||||||||||||||| |
seq2  ACCTAGCAGA-GATAACTG-CTTTTTC-TTCT-GTGACTTGAATCATG-C  135

seq1  ACTATCCCCCAAAAGACTAAGAGTGAAGATGGGGTCTTACATCACA-TCT  199
      |||||||||||||||||| ||||||||||| ||||||||||||||| |||
seq2  ACTATCCCCCAAAAGACT-AGAGTGAAGAT-GGGTCTTACATCACATTCT  183

seq1  ACACAGGACTACCCACTGGCAGGTGTTAACCAAGTGATTAGTCAACAGAG  249
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACACAGGACTACCCACTGGCAGGTGTT-ACCAAGTGATTAGTCAACAGAG  232

seq1  ATTTTAATTAGTAGGCTACCTTTCCTTCCTAAAACTCCTATTTCCTTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTAGTAGGCTACCTTTCCTTCCTAAAACTCCTATTTCCTTTTC  282

seq1  TTCTTATCTCCTTACTTTCATAGTGCTTTTGGGGTTTCTTTTTTTCCTCT  349
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCTTATCTCCTTACTTTCATAGTGC-TTTGGGGTTTCTTTTTTTCCTCT  331

seq1  CTTCACATAGCCATCAGCAGATTGTCCATCTATCTAAAGCCCGAATTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATAGCCATCAGCAGATTGTCCATCTATCTAAAGCCCGAATTAAC  381

seq1  TACTCTATAGGTGAGAATGTGCCTACGTGTGTGCCTCCTGTTCTGGGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTATAGGTGAGAATGTGCCTACGTGTGTGCCTCCTGTTCTGGGGGT  431

seq1  ACTATTTTCTTAAATGCTTTTAAGTTGGACTTATAAACAACACATTCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTCTTAAATGCTTTTAAGTTGGACTTATAAACAACACATTCACA  481

seq1  TCAAGGCTTTACCCATAGAGAGATTCTATGTGATTGAAGAAAATATATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTTTACCCATAGAGAGATTCTATGTGATTGAAGAAAATATATTC  531

seq1  CAAATTTTAATGTTTGCTACATCTTAGTACCAAAATTTGCGATGCCTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTAATGTTTGCTACATCTTAGTACCAAAATTTGCGATGCCTTGA  581

seq1  CTTACAAGTGAATAAATAATGCCAGTAGCACAATCATGAACTCCAAGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAGTGAATAAATAATGCCAGTAGCACAATCATGAACTCCAAGTCA  631

seq1  TGAAATCAATAATGTGGTTTTAAATTCTTGCCATAGGTTATTATTAATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAATAATGTGGTTTTAAATTCTTGCCATAGGTTATTATTAATAG  681

seq1  TATTAATTATTTTAAGCAAAGTCGCTGGATTAACTTCGTAACTTCTTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTATTTTAAGCAAAGTCGCTGGATTAACTTCGTAACTTCTTTCC  731

seq1  TTTTAAATCAACTTGCTCATTTTATTTCTTAGTCTCTAGAAAATAAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCAACTTGCTCATTTTATTTCTTAGTCTCTAGAAAATAAAACA  781

seq1  CAGATTGTTCCTCCCAGTTTTTACTTCTGAATCTGACACAGGCATCTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGTTCCTCCCAGTTTTTACTTCTGAATCTGACACAGGCATCTTGG  831

seq1  TCAAAGCTCTCACCATGTGTTAATAAGACCTTCTCTATGCCTGCTGGTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTCTCACCATGTGTTAATAAGACCTTCTCTATGCCTGCTGGTTA  881

seq1  TTAAACTGTAGTTGCTACCATAACTAAAACTTAGAGTCTCTCCCAGGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGTAGTTGCTACCATAACTAAAACTTAGAGTCTCTCCCAGGACA  931

seq1  GTCCCACCAAATCTCACATGCTTATTACTTTAGTTTAACTTTCATATTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCAAATCTCACATGCTTATTACTTTAGTTTAACTTTCATATTGA  981

seq1  CTTAGAGTACTTGGACATTCCATTTCATCTATTAAAACCTCAGCCACAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGTACTTGGACATTCCATTTCATCTATTAAAACCTCAGCCACAAA  1031

seq1  TATAATAAATGCTGTGATGTACAACATTTGAACAGATGAATGATCTTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATGCTGTGATGTACAACATTTGAACAGATGAATGATCTTGTG  1081

seq1  ACTTTATAGTCTGTGAGGACCAGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  ACTTTATAGTCTGTGAGGACCAGAATTC  1109