BAC Information

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BAC

Clone NameB6Ng01-135H02
Chromosome3 (Build37)
Map Location 18,379,600 - 18,480,051
singlet/doubletdoublet
Overlap geneLOC622921, LOC100040153
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135H02.bB6Ng01-135H02.g
ACCDH935476DH935477
length1,1101,112
definitionDH935476|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H02, 5' end.DH935477|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,379,600 - 18,380,685)(18,478,951 - 18,480,051)
sequence
gaattcagcataaaagaaaagtggccaagaagtgttcagggaggtatgga
gggaggaggaagcacaaggacagaaaatgagcacaatgttcagttctcag
gaatgaagtcatgctgtgcagttcagtactgtggtgcgaaactactgtgg
tctgacacttgtgacataagccaaaataaacatgttctccttcaagttgt
tttcccacaaactatttctcagcaatggaatgctaacaacaagagttctc
aaagactagatagaaagtttctaaagatccagagatgagtcacgtaaagg
ttcacaaacttacaaaacaataaaacaaagatgtaaatactgactccccc
aacctgtgactaaatatggcgtacacgtctcctgttttcaagctattgca
atataaaaatgtggaattccgtgacaataaaataaaacatatccacacat
tcctcaacagcctagatagaatttttttaaaattataaaaaattagttag
taaaacactatctactaaacctcaaaaacgtagggtctgaaactccatga
gtgatgataggtgagagtgaatatggatttttccaacatgttccagatcc
tccatacagggcatggggtgtctctttggtatttttatgttcttctttct
cctacttctaaggtttgagttccccagtaatgatcagtacatctgagaaa
gcagtgtcgcagtagctgcctgtctgaagactgttcccttttctctgtca
cccagataaggcttactgcaccctttctttgcgatatgaaatttcttaaa
tgccaggtggttaggtgttggtatctgctgagttttgattctgttcgatg
ggctgcacaatttcccaagatccacaatctgttaagccaccacgaatcag
aggtttccttttaaagcttaaaatcccacagtttatcattattatcaaaa
tcctttatgacctaccatacagaagttaagaacagaaactaccatcacct
atgaatctatgacctgcaccatggaaaaggataaaaaactggaaagaaaa
acttaataagcctcctggccctcactctctggtttatgaatcatgaactt
taggttcatt
gaattcagtcccttgaaccaacatgatagaaggagaaaactgattttctc
aagttattctctgccccacatatgcactcaaccccacacacatactatct
aaacacaaaatgagcaaatccattttagatctaaaactaatttaaataca
gagagcataatagttgttgtattccggtaaccatcagctcactctgcatc
acatacatgtgatgtcacctgtgctggggtttctcgctcaagctcttagg
tatatcaccatagtgactaatcagtaagtagcacttatattagtgaagta
aaggctgtttgcagttgaatgcatgatgcttctatttcccatatcacata
gagataggaaatacctgtgtgttataacagtttttaaaataattgcttct
tttctaataatttttcccatcaaacctctattgaatttgattttctttct
taatcaggagtatttctctttgtctatctttgttttcaaaagccttaata
gctagattaaaattgagatttctttttaatgtgattcttttgagaatttg
aatattgactaaatgtttctaaggaggtgaagaagtcacaaaaatgctga
cctcaggagtagaggtctgtgtttaggtagagcaaggtgtagaaggtact
ctggcaggacattgtctcatagaccacttcaaattaggtacctatggtgg
cacaattagacagtcagtgggtgcctaaagtagtatgcttttgtaagtga
agtgtgagatgtccacagatccctggggacaatgggtctatatggattaa
agtcaacagtttgtggcctgttgtgctaagggacaagggcagactggaca
gtttcctctcaaacatcaagaacctagtaaatctggaaggatcttggcca
taaaggaatctagctattgtctcttggccctaaacttcagccaagtcacc
agaagaataaaagctgcttagcaaacaaagattgtctgatggaattcaaa
gaaattaccagagataatcacaaagttcctaatattttcatttcaacttc
tcatccttcctgggaacaggttcaaggtttctcctggaaggaagctggtg
aaaagggtctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18379600_18380685
seq2: B6Ng01-135H02.b_48_1157

seq1  GAATTCAGCATAAAAGAAAAGTGGCCAAGAAGTGTTCAGGGAGGTATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAAAAGAAAAGTGGCCAAGAAGTGTTCAGGGAGGTATGGA  50

seq1  GGGAGGAGGAAGCACAAGGACAGAAAATGAGCACAATGTTCAGTTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGAAGCACAAGGACAGAAAATGAGCACAATGTTCAGTTCTCAG  100

seq1  GAATGAAGTCATGCTGTGCAGTTCAGTACTGTGGTGCGAAACTACTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGTCATGCTGTGCAGTTCAGTACTGTGGTGCGAAACTACTGTGG  150

seq1  TCTGACACTTGTGACATAAGCCAAAATAAACATGTTCTCCTTCAAGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACTTGTGACATAAGCCAAAATAAACATGTTCTCCTTCAAGTTGT  200

seq1  TTTCCCACAAACTATTTCTCAGCAATGGAATGCTAACAACAAGAGTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACAAACTATTTCTCAGCAATGGAATGCTAACAACAAGAGTTCTC  250

seq1  AAAGACTAGATAGAAAGTTTCTAAAGATCCAGAGATGAGTCACGTAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAGATAGAAAGTTTCTAAAGATCCAGAGATGAGTCACGTAAAGG  300

seq1  TTCACAAACTTACAAAACAATAAAACAAAGATGTAAATACTGACTCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAACTTACAAAACAATAAAACAAAGATGTAAATACTGACTCCCCC  350

seq1  AACCTGTGACTAAATATGGCGTACACGTCTCCTGTTTTCAAGCTATTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGACTAAATATGGCGTACACGTCTCCTGTTTTCAAGCTATTGCA  400

seq1  ATATAAAAATGTGGAATTCCGTGACAATAAAATAAAACATATCCACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATGTGGAATTCCGTGACAATAAAATAAAACATATCCACACAT  450

seq1  TCCTCAACAGCCTAGATAGAATTTTTTTAAAATTATAAAAAATTAGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACAGCCTAGATAGAATTTTTTTAAAATTATAAAAAATTAGTTAG  500

seq1  TAAAACACTATCTACTAAACCTCAAAAACGTAGGGTCTGAAACTCCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACTATCTACTAAACCTCAAAAACGTAGGGTCTGAAACTCCATGA  550

seq1  GTGATGATAGGTGAGAGTGAATATGGATTTTTCCAACATGTTCCAGATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATAGGTGAGAGTGAATATGGATTTTTCCAACATGTTCCAGATCC  600

seq1  TCCATACAGGGCATGGGGTGTCTCTTTGGTATTTTTATGTTCTTCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACAGGGCATGGGGTGTCTCTTTGGTATTTTTATGTTCTTCTTTCT  650

seq1  CCTACTTCTAAGGTTTGAGTTCCCCAGTAATGATCAGTACATCTGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCTAAGGTTTGAGTTCCCCAGTAATGATCAGTACATCTGAGAAA  700

seq1  GCAGTGTCGCAGTAGCTGCCTGTCTGAAGACTGTTCCCTTTTCTCTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCGCAGTAGCTGCCTGTCTGAAGACTGTTCCCTTTTCTCTGTCA  750

seq1  CCCAGATAAGGCTTACTGCACCCTT--CTTGCGATATGAAATTTCTAAAA  798
      |||||||||||||||||||||||||   |||||||||||||||||| |||
seq2  CCCAGATAAGGCTTACTGCACCCTTTCTTTGCGATATGAAATTTCTTAAA  800

seq1  TGCCAGGTGGTTAGGTG-TGGTATCTGCTGAGTTTTGATTCTGTTCGAT-  846
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TGCCAGGTGGTTAGGTGTTGGTATCTGCTGAGTTTTGATTCTGTTCGATG  850

seq1  GGCTGCAC-ACTTCCCAAGATCCACAATCTGTTAAGCCACCACG-ATCAG  894
      |||||||| | ||||||||||||||||||||||||||||||||| |||||
seq2  GGCTGCACAATTTCCCAAGATCCACAATCTGTTAAGCCACCACGAATCAG  900

seq1  A-GTTTCCTTTT-AAGCTT-AAATCCCACAGTTTATCATTA-TAACCAAA  940
      | |||||||||| |||||| ||||||||||||||||||||| || | |||
seq2  AGGTTTCCTTTTAAAGCTTAAAATCCCACAGTTTATCATTATTATCAAAA  950

seq1  TCCTTTATGACCTAACCATACAG-AGTTAAG-ACAGAAACTA-CATCA-C  986
      ||||||||||||| ||||||||| ||||||| |||||||||| ||||| |
seq2  TCCTTTATGACCT-ACCATACAGAAGTTAAGAACAGAAACTACCATCACC  999

seq1  TATGTATCTATGACCTGCA-CATGG--AAGGAT--AAAACT-GAAAG-AA  1029
      |||| |||||||||||||| |||||  ||||||  |||||| ||||| ||
seq2  TATGAATCTATGACCTGCACCATGGAAAAGGATAAAAAACTGGAAAGAAA  1049

seq1  AACTT-ATAAGCTCCCTGG-CCTCACTCTCT-GTTTATG-ATCATGAACT  1075
      ||||| ||||||  ||||| ||||||||||| ||||||| ||||||||||
seq2  AACTTAATAAGCCTCCTGGCCCTCACTCTCTGGTTTATGAATCATGAACT  1099

seq1  TTAGGTTCATT  1086
      |||||||||||
seq2  TTAGGTTCATT  1110

seq1: chr3_18478951_18480051
seq2: B6Ng01-135H02.g_70_1181 (reverse)

seq1  TCAGCCCCTTTTCCACCAGCCTCC-TCCA-GAGAAA-CTTG-ACCTGTTC  46
      |||| ||||||| ||||||| ||| |||| |||||| |||| ||||||||
seq2  TCAGACCCTTTT-CACCAGCTTCCTTCCAGGAGAAACCTTGAACCTGTTC  49

seq1  CCAGGAAAGAATGAG-AGTTTGAATGAAAATA-TAGGAACTTCGTGATAT  94
      ||||| ||| ||||| ||||  |||||||||| ||||||||| |||||  
seq2  CCAGG-AAGGATGAGAAGTTGAAATGAAAATATTAGGAACTTTGTGATTA  98

seq1  TCTCT-GTAATTTCTTTGGACTCCATCAGACAATCTTTGTTTGCTTAGCA  143
      ||||| |||||||||||| | |||||||||||||||||||||||| ||||
seq2  TCTCTGGTAATTTCTTTGAATTCCATCAGACAATCTTTGTTTGCTAAGCA  148

seq1  GCTTTTATTCTTCTGGTGACTTTGGCTGAAGTTTAGGGCCAAGAGAC-AT  192
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  GCTTTTATTCTTCTGGTGAC-TTGGCTGAAGTTTAGGGCCAAGAGACAAT  197

seq1  AGCTAGATTCC-TTATGGCCAAGATCCTTCCAGATTTACTAGG-TCTTGA  240
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  AGCTAGATTCCTTTATGGCCAAGATCCTTCCAGATTTACTAGGTTCTTGA  247

seq1  TGTTTGAGAGGAAACTGTCCAGTCTGCCCTTGTCCCTTAGCACAACAGGC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGAGGAAACTGTCCAGTCTGCCCTTGTCCCTTAGCACAACAGGC  297

seq1  CAC-AACTGTTGAC-TTAATCCATATAGA-CCATTGTCCCCAGGGATCTG  337
      ||| |||||||||| |||||||||||||| ||||||||||||||||||||
seq2  CACAAACTGTTGACTTTAATCCATATAGACCCATTGTCCCCAGGGATCTG  347

seq1  TGGACATCTCACACTTCACTTAC-AAAGCATACTACTTTAGGCACCCACT  386
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGACATCTCACACTTCACTTACAAAAGCATACTACTTTAGGCACCCACT  397

seq1  GACTGTCTAATTGTGCCACCATAGGTACCTAATTTGAAGTGGTCTATGAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTAATTGTGCCACCATAGGTACCTAATTTGAAGTGGTCTATGAG  447

seq1  ACAATGTCCTGCCAGAGTACCTTCTACACCTTGCTCTACCTAAACACAGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCCTGCCAGAGTACCTTCTACACCTTGCTCTACCTAAACACAGA  497

seq1  CCTCTACTCCTGAGGTCAGCATTTTTGTGACTTCTTCACCTCCTTAGAAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTCCTGAGGTCAGCATTTTTGTGACTTCTTCACCTCCTTAGAAA  547

seq1  CATTTAGTCAATATTCAAATTCTCAAAAGAATCACATTAAAAAGAAATCT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTCAATATTCAAATTCTCAAAAGAATCACATTAAAAAGAAATCT  597

seq1  CAATTTTAATCTAGCTATTAAGGCTTTTGAAAACAAAGATAGACAAAGAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTAATCTAGCTATTAAGGCTTTTGAAAACAAAGATAGACAAAGAG  647

seq1  AAATACTCCTGATTAAGAAAGAAAATCAAATTCAATAGAGGTTTGATGGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCCTGATTAAGAAAGAAAATCAAATTCAATAGAGGTTTGATGGG  697

seq1  AAAAATTATTAGAAAAGAAGCAATTATTTTAAAAACTGTTATAACACACA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATTAGAAAAGAAGCAATTATTTTAAAAACTGTTATAACACACA  747

seq1  GGTATTTCCTATCTCTATGTGATATGGGAAATAGAAGCATCATGCATTCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCCTATCTCTATGTGATATGGGAAATAGAAGCATCATGCATTCA  797

seq1  ACTGCAAACAGCCTTTACTTCACTAATATAAGTGCTACTTACTGATTAGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAACAGCCTTTACTTCACTAATATAAGTGCTACTTACTGATTAGT  847

seq1  CACTATGGTGATATACCTAAGAGCTTGAGCGAGAAACCCCAGCACAGGTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGGTGATATACCTAAGAGCTTGAGCGAGAAACCCCAGCACAGGTG  897

seq1  ACATCACATGTATGTGATGCAGAGTGAGCTGATGGTTACCGGAATACAAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACATGTATGTGATGCAGAGTGAGCTGATGGTTACCGGAATACAAC  947

seq1  AACTATTATGCTCTCTGTATTTAAATTAGTTTTAGATCTAAAATGGATTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTATGCTCTCTGTATTTAAATTAGTTTTAGATCTAAAATGGATTT  997

seq1  GCTCATTTTGTGTTTAGATAGTATGTGTGTGGGGTTGAGTGCATATGTGG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTTGTGTTTAGATAGTATGTGTGTGGGGTTGAGTGCATATGTGG  1047

seq1  GGCAGAGAATAACTTGAGAAAATCAGTTTTCTCCTTCTATCATGTTGGTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAATAACTTGAGAAAATCAGTTTTCTCCTTCTATCATGTTGGTT  1097

seq1  CAAGGGACTGAATTC  1101
      |||||||||||||||
seq2  CAAGGGACTGAATTC  1112