BAC Information

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BAC

Clone NameB6Ng01-135H24
Chromosome3 (Build37)
Map Location 128,153,888 - 128,260,697
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135H24.bB6Ng01-135H24.g
ACCDH935519DH935520
length1,1241,170
definitionDH935519|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H24, 5' end.DH935520|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,153,888 - 128,155,012)(128,259,504 - 128,260,697)
sequence
aaacttgtttcgttctgtgctataaaagactgtcaaatgtcacaccccaa
gagatgcaacaggattccacagatttatttatttcaagctctgaagtcta
ttagcaacagtgcccctttgctgttggaaatagagctgtgaggacattaa
tttcagatatgacaacttgcttttctgacaaattaatgatagaccttcct
tagtcccatatttatttattttcctaacatgaggtacaatcacactcacc
agttctttagatttcagaagacaaatatttgacataatttgtcagataaa
ctgttcgatcaaccatctatttttaaccaagttgtcctatccatgggaat
aaatggaaacgttctgacaaagcttgagcttctactaactccgaacctta
gcattatgcagatgcctgacagcaaattaaatctataagtttgtcttctg
agaacaacaggaaacctctctctataaaacaataaacttttggggaaatt
aattgaatgagaatggtcatgctattcagaatgtaagggactgattttag
ctttgtccatgacagctttgaagtgacagactgggaatacattttaaaat
gtcagtgtcacattgaaataccattttgaaatattaacttttgtatgtta
tattgactagagatatgcttctcataatttgtgataagataaaatagaat
cactgtgtaattactcttgagagaaatatttcatcttatcaaccttatta
ttttatatattgatatttccactaactaaaggagaaatccattaaaaatt
aatgtgtgtgtgtgcgtttgcatgtgtttgtgtgtgtgtatgtgtgtgtg
catgtgtaaaatacatagtagtaactgacctcctaccacagtctttttct
catttaggtggaggaaaatacacatcatactggacttctttcaaaacaaa
aggaaacaggagattcaaatgggtttggcagaaatttggagcactgaacc
acacttgagggattctgagatagaaggaaagtcaagattttttctctttt
ggcaggacctcaaaccaactacttgttcattggcacagcagctccaggac
cctttactgggtggaactttgcct
gaattctaagtttctgggctaatatccacttatcagtgagtgcataccat
gtgagttcttttgtgactgggttgcctcattatgtgtatgagtgtgtgtg
cagtgcccacagaagccagaagaaggcactgaaccccctgaaactggagc
tgcagatggttgtgagttaccatcctgagaataaaaaaaaaaaaaaaagg
cctctggaagggaatctgattctcttaaaacaactgagccttatctctag
ccccgaccctaatgtttttagtagcacaataacactatgcaaagaacact
tagaaattctgttcatccttatttatatgaaccaagttttctaaagctaa
tgatttttgacaaatacatgaatgcatttgttttattatcatttaattta
ctatgggcctgagtacaaagagaaagactttgaatttttttgtttgttta
ttttgttttttgaggtaaggtttctctgtgtcctcaaactcagaaattcg
cctgcctctgcctcccaagtgctgggattaaaggcgtgtactaccactcc
cgtcccttgaaatattttttaaattataaatggctttgtgaatactttta
ttaaccccatcgcaagggtttcatgatctctgaaaatacaaccacatgat
catactgatttaccacaatgataaatgtgttctaaacatgttaacatttg
attttagccatttaacttattcattttttaataattattgagtgtatgga
ggggactttccatgccatggtttgtatatagacaaatttcaggagtcaat
tctcttctcccacatgtggatcctagggaattagactcagtggtctgagt
tggtaaatagcgcctttgcccactaagttgaattttgatttgtgataagt
aacatgatggtataaatagatgaacagtaagaaagtccactgtgtcagag
agtcatgcccatacctccatggtgtcctccttggcacaggtcagcagcct
gcttattagtgattaactggtaggaagaaactgggcaagtcaaatgactt
ctctcccttctttcagtacaggacatatcaaataacgcgctcgtaatcta
ggatacacttgttaagtggagcttcagccctatggctcttaccctccaca
acggctagtatcctggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128153888_128155012
seq2: B6Ng01-135H24.b_62_1185

seq1  AAACTTGTTTCGTTCTGTGCTATAAAAGACTGTCAAATGTCACACCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGTTTCGTTCTGTGCTATAAAAGACTGTCAAATGTCACACCCCAA  50

seq1  GAGATGCAACAGGATTCCACAGATTTATTTATTTCAAGCTCTGAAGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAACAGGATTCCACAGATTTATTTATTTCAAGCTCTGAAGTCTA  100

seq1  TTAGCAACAGTGCCCCTTTGCTGTTGGAAATAGAGCTGTGAGGACATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAACAGTGCCCCTTTGCTGTTGGAAATAGAGCTGTGAGGACATTAA  150

seq1  TTTCAGATATGACAACTTGCTTTTCTGACAAATTAATGATAGACCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATATGACAACTTGCTTTTCTGACAAATTAATGATAGACCTTCCT  200

seq1  TAGTCCCATATTTATTTATTTTCCTAACATGAGGTACAATCACACTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCATATTTATTTATTTTCCTAACATGAGGTACAATCACACTCACC  250

seq1  AGTTCTTTAGATTTCAGAAGACAAATATTTGACATAATTTGTCAGATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTAGATTTCAGAAGACAAATATTTGACATAATTTGTCAGATAAA  300

seq1  CTGTTCGATCAACCATCTATTTTTAACCAAGTTGTCCTATCCATGGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCGATCAACCATCTATTTTTAACCAAGTTGTCCTATCCATGGGAAT  350

seq1  AAATGGAAACGTTCTGACAAAGCTTGAGCTTCTACTAACTCCGAACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAACGTTCTGACAAAGCTTGAGCTTCTACTAACTCCGAACCTTA  400

seq1  GCATTATGCAGATGCCTGACAGCAAATTAAATCTATAAGTTTGTCTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATGCAGATGCCTGACAGCAAATTAAATCTATAAGTTTGTCTTCTG  450

seq1  AGAACAACAGGAAACCTCTCTCTATAAAACAATAAACTTTTGGGGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACAGGAAACCTCTCTCTATAAAACAATAAACTTTTGGGGAAATT  500

seq1  AATTGAATGAGAATGGTCATGCTATTCAGAATGTAAGGGACTGATTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATGAGAATGGTCATGCTATTCAGAATGTAAGGGACTGATTTTAG  550

seq1  CTTTGTCCATGACAGCTTTGAAGTGACAGACTGGGAATACATTTTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCATGACAGCTTTGAAGTGACAGACTGGGAATACATTTTAAAAT  600

seq1  GTCAGTGTCACATTGAAATACCATTTTGAAATATTAACTTTTGTATGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTCACATTGAAATACCATTTTGAAATATTAACTTTTGTATGTTA  650

seq1  TATTGACTAGAGATATGCTTCTCATAATTTGTGATAAGATAAAATAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTAGAGATATGCTTCTCATAATTTGTGATAAGATAAAATAGAAT  700

seq1  CACTGTGTAATTACTCTTGAGAGAAATATTTCATCTTATCAACCTTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGTAATTACTCTTGAGAGAAATATTTCATCTTATCAACCTTATTA  750

seq1  TTTTATATATTGATATTTCCACTAACTAAAGGAGAAATCCATTAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATTGATATTTCCACTAACTAAAGGAGAAATCCATTAAAAATT  800

seq1  AATGTGTGTGTGTGCGTTTGCATGTGTTTGTGTGTGTGTATGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTGTGTGCGTTTGCATGTGTTTGTGTGTGTGTATGTGTGTGTG  850

seq1  CATGTGTAAAATACATAGTAGTAACTGACCTCCTACCACAGTCTTTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTAAAATACATAGTAGTAACTGACCTCCTACCACAGTCTTTTTCT  900

seq1  CATTTAGGTGGAGGAAAATACACATCATACTGGACTTC-TTCAAAACAAA  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATTTAGGTGGAGGAAAATACACATCATACTGGACTTCTTTCAAAACAAA  950

seq1  AGGAAACAGGGAGATTCAAATGGGTATGGCAGAAATATGGAAGCACTGAA  999
      |||||||| |||||||||||||||| |||||||||| ||| |||||||||
seq2  AGGAAACA-GGAGATTCAAATGGGTTTGGCAGAAATTTGG-AGCACTGAA  998

seq1  CCACACTTGAGGGA-TCTGAGATCAGAGGAAAGTCAAAGATTATATCTC-  1047
      |||||||||||||| ||||||||   ||||||||| |||||| | |||| 
seq2  CCACACTTGAGGGATTCTGAGATAGAAGGAAAGTC-AAGATTTTTTCTCT  1047

seq1  TGTGGCAGGGACTCACAACAACTACCTGCTCAATGAGCACAGCAGCTCCA  1097
      | |||||||  |||| | ||||||| || ||| || ||||||||||||||
seq2  TTTGGCAGGACCTCAAACCAACTACTTGTTCATTG-GCACAGCAGCTCCA  1096

seq1  GGACCCTTAACTGGTTGAAACTTTGCCT  1125
      |||||||| ||||| || ||||||||||
seq2  GGACCCTTTACTGGGTGGAACTTTGCCT  1124

seq1: chr3_128259504_128260697
seq2: B6Ng01-135H24.g_69_1238 (reverse)

seq1  CTCTCCAGGATTTACCTTAGCCTGATTGTAGGTGAAATGAATGCAATA-G  49
      ||||||||||  |||  |||||   |||| |  |  | ||  || ||| |
seq2  CTCTCCAGGA--TAC--TAGCC--GTTGTGGAGGGTAAGA--GCCATAGG  42

seq1  GCTGTAAAGCTCCACACTAAACAATGTGTATCCTAGAATACAGAGCAGTT  99
      ||||  ||||||  |||| ||||| |||||||||||| ||| ||||    
seq2  GCTG--AAGCTC--CACTTAACAA-GTGTATCCTAGATTAC-GAGC--GC  84

seq1  TTTATTTTGTATTGTTCTGTACTTGAAAGAA-AGAGAGAAGTCATCTGAC  148
       ||||||  || ||| |||||| ||||||||  |||||||||||| ||||
seq2  GTTATTTGATA-TGTCCTGTAC-TGAAAGAAGGGAGAGAAGTCATTTGAC  132

seq1  CTGTGCCCCAGTTTTCTCCCTACCAGTATATCACTACTAAGCCAGGCTTG  198
       ||   ||||| ||||| |||||||||  ||||||| |||| ||||| ||
seq2  TTG---CCCAG-TTTCTTCCTACCAGTTAATCACTAATAAG-CAGGC-TG  176

seq1  CTGACCTTGTGCCAAGGA-GACACCATTGAGGTATGGGCATGACTTCTCT  247
      |||||| ||||||||||| |||||||| |||||||||||||||| |||||
seq2  CTGACC-TGTGCCAAGGAGGACACCATGGAGGTATGGGCATGAC-TCTCT  224

seq1  GACACAGTGGACTTTCTTACTGTTCATCTATTTATACCATCATGTTACTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTGGACTTTCTTACTGTTCATCTATTTATACCATCATGTTACTT  274

seq1  ATCACAAATCAAAAATTCAACTTAGTGGGCAAAGGCGCTATTTACCAACT  347
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAATC-AAAATTCAACTTAGTGGGCAAAGGCGCTATTTACCAACT  323

seq1  CAGACCACCTGAGTCTAATTCCCTAGGATCCACATGTGGGAGAAGAGAAT  397
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCA-CTGAGTCTAATTCCCTAGGATCCACATGTGGGAGAAGAGAAT  372

seq1  TGACTCCTGAAATTTGTCTATATACAAACCATGGCATGG-AAGTCCCCTC  446
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGACTCCTGAAATTTGTCTATATACAAACCATGGCATGGAAAGTCCCCTC  422

seq1  CATACACTCAATAATTATTAAAAAATGAATAAGTTAAATGGCTAAAATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTCAATAATTATTAAAAAATGAATAAGTTAAATGGCTAAAATCA  472

seq1  AATGTTAACATGTTTAGAACACATTTATCATTGTGGTAAATCAGTATGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAACATGTTTAGAACACATTTATCATTGTGGTAAATCAGTATGAT  522

seq1  CATGTGGTTGTATTTTCAGAGATCATGAAACCCTTGCGATGGGGTTAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTGTATTTTCAGAGATCATGAAACCCTTGCGATGGGGTTAATA  572

seq1  AAAGTATTCACAAAGCCATTTATAATTTAAAAAATATTTCAAGGGACGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTCACAAAGCCATTTATAATTTAAAAAATATTTCAAGGGACGGG  622

seq1  AGTGGTAGTACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAGTACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCG  672

seq1  AATTTCTGAGTTTGAGGACACAGAGAAACCTTACCTCAAAAAACAAAATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAGTTTGAGGACACAGAGAAACCTTACCTCAAAAAACAAAATA  722

seq1  AACAAACAAAAAAATTCAAAGTCTTTCTCTTTGTACTCAGGCCCATAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAAATTCAAAGTCTTTCTCTTTGTACTCAGGCCCATAGTA  772

seq1  AATTAAATGATAATAAAACAAATGCATTCATGTATTTGTCAAAAATCATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATGATAATAAAACAAATGCATTCATGTATTTGTCAAAAATCATT  822

seq1  AGCTTTAGAAAACTTGGTTCATATAAATAAGGATGAACAGAATTTCTAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGAAAACTTGGTTCATATAAATAAGGATGAACAGAATTTCTAAG  872

seq1  TGTTCTTTGCATAGTGTTATTGTGCTACTAAAAACATTAGGGTCGGGGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTGCATAGTGTTATTGTGCTACTAAAAACATTAGGGTCGGGGCT  922

seq1  AGAGATAAGGCTCAGTTGTTTTAAGAGAATCAGATTCCCTTCCAGAGGCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAGGCTCAGTTGTTTTAAGAGAATCAGATTCCCTTCCAGAGGCC  972

seq1  TTTTTTTTTTTTTTTTATTCTCAGGATGGTAACTCACAACCATCTGCAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTATTCTCAGGATGGTAACTCACAACCATCTGCAGC  1022

seq1  TCCAGTTTCAGGGGGTTCAGTGCCTTCTTCTGGCTTCTGTGGGCACTGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTCAGGGGGTTCAGTGCCTTCTTCTGGCTTCTGTGGGCACTGCA  1072

seq1  CACACACTCATACACATAATGAGGCAACCCAGTCACAAAAGAACTCACAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCATACACATAATGAGGCAACCCAGTCACAAAAGAACTCACAT  1122

seq1  GGTATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATTC  1170