BAC Information

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BAC

Clone NameB6Ng01-135L13
Chromosome3 (Build37)
Map Location 139,952,548 - 140,082,673
singlet/doubletdoublet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135L13.bB6Ng01-135L13.g
ACCDH935688DH935689
length1,1361,131
definitionDH935688|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L13, 5' end.DH935689|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,081,534 - 140,082,673)(139,952,548 - 139,953,681)
sequence
gaattcccccaagaaaaaccccacaaaaaaacagcaacaaaatatgtaga
aaatttaataagtacattgctagttgtattggtttgtttgtttgtttgtt
tgttttgttttgttttgtttttttggtctttgaaatgaaaagaggttata
aaattatctagtcttgtttgttttctaattttgtttaaggagacagtctc
actgtatagcactgacaagcctggaattcatgatgtaacaacatcaaact
caaaaagccccacttacctctacctctcagtactgagattaacgtcatat
gccacaatggccaatgataaattatcattttaattaaagttattactaca
ggcttatatttatttagttattttcatgttttattattttgcttttgaga
tatctcatatatatatatatttttttttaattaggtatttttctcattta
catttccgatgctatcccaaaagtcccacatactctccccccccccaaca
ctcctctacccacccactcccactttttggccctggcgttcccctgtact
ggggcatataaaatttgcaagtccaatgggcctctctttccagtgatggc
cgactaggccatcttttgatacatatgcagctagagtcaagagctccagg
gtactggttagctcataatgttgttccacctatagggttgtagatccctt
tagctccttggctactttctctagctcctccattggggggccctgtgatc
catccaatagctgactgtgagcatccacttctgtatttgctaggcccctg
catagtctcacaagagacagctatatcagggtccctttcagcaaaatctt
actagtgtatgcaatggtgtcagcatttggaggctgattatgggatggat
ccctggatatggcagtctctagatggtccattcttttgtctcagctcaaa
actttgtcactgtaactcattcatgggtgttttgtcccaattttaagagg
ggcaaagtgtccacacttgggtttcattcttcttgagttctggtctgaaa
catactatatattcaaggctgaaacatactatatattcaaggcttgaaca
tactataactaagagaagcctaaactttcaagggag
gaattctttgtatatattgggtattagccccttattggatttagcattgg
taaagatcttttcccaatctgttttttgccattttgtcttattgacatat
cctttgtcttacagaagctttgcaattttttggtgaattttttgcaattt
gcagattattggctgtactgctctagcattctctgctttattctttaaag
ataaaatttctaaccaaaccagaaacctggctggaagccagcaaactcct
gcagttctatgatctctaaacctgcaggattttagcactgaattataggg
atgcctgtggccatacctagctttttacataagcactttatatttgaaca
ctggttctcatacttatcccccaaatatgttcatcttaccagtttgaaac
tacattttaaaaatccatattagagaaagaagtggtagacatgtgcaggt
aaatccgtgtttgtggatattcaggaagtaattaactgatactgaaaagc
atacgaactgctagccatgcactggactctttcagaattagcatcctggg
gcttaattttctagtctagttgaatgtcaccataactgagtgactaaggt
acaagtgttccatggggcagtatcacagtaccaaacagactacctttttt
tttctctctctctcttttggattagctacacgatacctggaaataattgt
catttgcatatgtagacaatgattttccatattagacaagagcattttca
ttgacatcaaaattattctgcccatgctctttgagagaaggaacataccc
tgcataccaagtcactgattctgtcttagtctctggttttcggtgtatct
tgtagagtctaatctggtttctttggcacactttttttttttttacttag
ttatgaaagttttttatctgatcctgcatagattatacaaaagctataaa
agaaaactgacatttttgtaaaacttctacctgagaggtaattaacaaat
gtatttcactatacataaattaagcacatgttccttttatattactaata
aaatataatagcttggaattatcactttatttcagtccaaaaaaattgtt
taggcatacttattgaaaatcactaaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140081534_140082673
seq2: B6Ng01-135L13.b_46_1181 (reverse)

seq1  CTCCC-TGAAAGTTTAGGCTGCTCTAAGTATATAGTATGTTTCAAGCC-T  48
      ||||| |||||||||||||| |||| ||| ||||||||| |||||||| |
seq2  CTCCCTTGAAAGTTTAGGCTTCTCTTAGT-TATAGTATG-TTCAAGCCTT  48

seq1  GAATATATAGTATGTTTCAAGCCTGAATATATAGTATGTTTCAGACCAGA  98
      |||||||||||||||||||  | |||||||||||||||||||||||||| 
seq2  GAATATATAGTATGTTTCAGCCTTGAATATATAGTATGTTTCAGACCAG-  97

seq1  AACTCAAGAAGAATGAAAACCAAAGTGTGGACACTTTGCCCCTTCTTAGA  148
      ||||||||||||||| ||||| |||||||||||||||||||| ||||| |
seq2  AACTCAAGAAGAATG-AAACCCAAGTGTGGACACTTTGCCCC-TCTTAAA  145

seq1  ATTGGGAACAAAACACCCATGGAATGAGTTACAGTGACAAAGTTTTGAGC  198
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTGGG-ACAAAACACCCAT-GAATGAGTTACAGTGACAAAGTTTTGAGC  193

seq1  TGAGACAAAAGAATGGACCATCTAGAGACTGCCATATCCAGGGATCCATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAAAGAATGGACCATCTAGAGACTGCCATATCCAGGGATCCATC  243

seq1  CCATAATCAGCCTCCAAATGCTGACACCATTGCATACACTAGTAAGATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCAGCCTCCAAATGCTGACACCATTGCATACACTAGTAAGATTT  293

seq1  TGCTGAAA-GGACCCTGATATAGCTGTCTCTTGTGAGACTATGCAGGGGC  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAGGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCAGGGGC  343

seq1  CTAGCAAATACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAATACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACA  393

seq1  GGGCCCCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGAT  443

seq1  CTACAACCCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCTGGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACCCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCTGGAG  493

seq1  CTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCA  543

seq1  CTGGAAAGAGAGGCCCATTGGACTTGCAAATTTTATATGCCCCAGTACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGAGAGGCCCATTGGACTTGCAAATTTTATATGCCCCAGTACAG  593

seq1  GGGAACGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGAGGAGTGTTGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGAGGAGTGTTGGG  643

seq1  GGGGGGGAGAGTATGTGGGACTTTTGGGATAGCATCGGAAATGTAAATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGAGAGTATGTGGGACTTTTGGGATAGCATCGGAAATGTAAATGA  693

seq1  GAAAAATACCTAATTAAAAAAAAATATATATATATATGAGATATCTCAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACCTAATTAAAAAAAAATATATATATATATGAGATATCTCAAA  743

seq1  AGCAAAATAATAAAACATGAAAATAACTAAATAAATATAAGCCTGTAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATAATAAAACATGAAAATAACTAAATAAATATAAGCCTGTAGTA  793

seq1  ATAACTTTAATTAAAATGATAATTTATCATTGGCCATTGTGGCATATGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTAATTAAAATGATAATTTATCATTGGCCATTGTGGCATATGAC  843

seq1  GTTAATCTCAGTACTGAGAGGTAGAGGTAAGTGGGGCTTTTTGAGTTTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCTCAGTACTGAGAGGTAGAGGTAAGTGGGGCTTTTTGAGTTTGA  893

seq1  TGTTGTTACATCATGAATTCCAGGCTTGTCAGTGCTATACAGTGAGACTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTACATCATGAATTCCAGGCTTGTCAGTGCTATACAGTGAGACTG  943

seq1  TCTCCTTAAACAAAATTAGAAAACAAACAAGACTAGATAATTTTATAACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAAACAAAATTAGAAAACAAACAAGACTAGATAATTTTATAACC  993

seq1  TCTTTTCATTTCAAAGACCAAAAAAACAAAACAAAACAAAACAAACAAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATTTCAAAGACCAAAAAAACAAAACAAAACAAAACAAACAAAC  1043

seq1  AAACAAACAAACCAATACAACTAGCAATGTACTTATTAAATTTTCTACAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACCAATACAACTAGCAATGTACTTATTAAATTTTCTACAT  1093

seq1  ATTTTGTTGCTGTTTTTTTGTGGGGTTTTTCTTGGGGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGCTGTTTTTTTGTGGGGTTTTTCTTGGGGGAATTC  1136

seq1: chr3_139952548_139953681
seq2: B6Ng01-135L13.g_71_1201

seq1  GAATTCTTTGTATATATTGGGTATTAGCCCCTTATTGGATTTAGCATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTATATATTGGGTATTAGCCCCTTATTGGATTTAGCATTGG  50

seq1  TAAAGATCTTTTCCCAATCTGTTTTTTGCCATTTTGTCTTATTGACATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCTTTTCCCAATCTGTTTTTTGCCATTTTGTCTTATTGACATAT  100

seq1  CCTTTGTCTTACAGAAGCTTTGCAATTTTTTGGTGAATTTTTTGCAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCTTACAGAAGCTTTGCAATTTTTTGGTGAATTTTTTGCAATTT  150

seq1  GCAGATTATTGGCTGTACTGCTCTAGCATTCTCTGCTTTATTCTTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTATTGGCTGTACTGCTCTAGCATTCTCTGCTTTATTCTTTAAAG  200

seq1  ATAAAATTTCTAACCAAACCAGAAACCTGGCTGGAAGCCAGCAAACTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTCTAACCAAACCAGAAACCTGGCTGGAAGCCAGCAAACTCCT  250

seq1  GCAGTTCTATGATCTCTAAACCTGCAGGATTTTAGCACTGAATTATAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTATGATCTCTAAACCTGCAGGATTTTAGCACTGAATTATAGGG  300

seq1  ATGCCTGTGGCCATACCTAGCTTTTTACATAAGCACTTTATATTTGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGGCCATACCTAGCTTTTTACATAAGCACTTTATATTTGAACA  350

seq1  CTGGTTCTCATACTTATCCCCCAAATATGTTCATCTTACCAGTTTGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTCATACTTATCCCCCAAATATGTTCATCTTACCAGTTTGAAAC  400

seq1  TACATTTTAAAAATCCATATTAGAGAAAGAAGTGGTAGACATGTGCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTAAAAATCCATATTAGAGAAAGAAGTGGTAGACATGTGCAGGT  450

seq1  AAATCCGTGTTTGTGGATATTCAGGAAGTAATTAACTGATACTGAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCGTGTTTGTGGATATTCAGGAAGTAATTAACTGATACTGAAAAGC  500

seq1  ATACGAACTGCTAGCCATGCACTGGACTCTTTCAGAATTAGCATCCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGAACTGCTAGCCATGCACTGGACTCTTTCAGAATTAGCATCCTGGG  550

seq1  GCTTAATTTTCTAGTCTAGTTGAATGTCACCATAACTGAGTGACTAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTTTCTAGTCTAGTTGAATGTCACCATAACTGAGTGACTAAGGT  600

seq1  ACAAGTGTTCCATGGGGCAGTATCACAGTACCAAACAGACTACCTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTTCCATGGGGCAGTATCACAGTACCAAACAGACTACCTTTTTT  650

seq1  TTTCTCTCTCTCTCTTTTGGATTAGCTACACGATACCTGGAAATAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCTCTCTTTTGGATTAGCTACACGATACCTGGAAATAATTGT  700

seq1  CATTTGCATATGTAGACAATGATTTTCCATATTAGACAAGAGCATTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCATATGTAGACAATGATTTTCCATATTAGACAAGAGCATTTTCA  750

seq1  TTGACATCAAAATTATTCTGCCCATGCTCTTTGAGAGAAGGAACATACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCAAAATTATTCTGCCCATGCTCTTTGAGAGAAGGAACATACCC  800

seq1  TGCATACCAAGTCACTGATTCTGTCTTAGTCTCTGGTTTTCGGTGTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACCAAGTCACTGATTCTGTCTTAGTCTCTGGTTTTCGGTGTATCT  850

seq1  TGTAGAGTCTAATCTGGTTCCTTTGGCAACACTTTTTTTTTTTTTACTTA  900
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TGTAGAGTCTAATCTGGTTTCTTTGGC-ACACTTTTTTTTTTTTTACTTA  899

seq1  GTTATGAAAGGTTTTTATCTGATCCTGCATAGATTATACAAAAGCTAT-A  949
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GTTATGAAAGTTTTTTATCTGATCCTGCATAGATTATACAAAAGCTATAA  949

seq1  CAGAAAACTGACAGTTTTGTAAAACTTCTTACCTGAGAGGTAATTAACAA  999
       |||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  AAGAAAACTGACATTTTTGTAAAACTTC-TACCTGAGAGGTAATTAACAA  998

seq1  ATGTATTTCACTAATACATAAATTAAGGCACCATGTTCCTTTTTATATTA  1049
      |||||||||||| ||||||||||||| ||| |||||||| ||||||||||
seq2  ATGTATTTCACT-ATACATAAATTAA-GCA-CATGTTCC-TTTTATATTA  1044

seq1  CTAAT-AAATATCATAGCTT-GAATTATCACTTTATTGTCAGTCCAATAA  1097
      ||||| |||||| ||||||| |||||||||||||||| ||||||||| ||
seq2  CTAATAAAATATAATAGCTTGGAATTATCACTTTATT-TCAGTCCAA-AA  1092

seq1  AAATTGTTTA-GCATACTTA-TGAAAATCACATAATTTC  1134
      |||||||||| ||||||||| ||||||||||  ||||||
seq2  AAATTGTTTAGGCATACTTATTGAAAATCACTAAATTTC  1131