BAC Information

Click to search

BAC

Clone NameB6Ng01-135P15
Chromosome3 (Build37)
Map Location 114,559,146 - 114,560,221
singlet/doubletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220
Downstream geneOlfm3, EG546808, Edg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P15.bB6Ng01-135P15.g
ACCDH935878DH935879
length1,0981,131
definitionDH935878|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P15, 5' end.DH935879|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgggagagtcatatgagggatttgtcccaattgttcacaaatga
ttttgactcagagtcattatttctggaacttgtgaataggtggaaaactg
gcagttacaaatagtgtccagtatcagtcatagaatccaagcttagaagt
ccagggtaaaaagtgcaaatacacactttccaggacaagacagtttccta
gttgtacaagatggtaaataaatccttttaagagagagcaagcagaggtc
tgtcacccagggatagcacctcaggcgtgcctcacaggcaaaaatctttc
cagagatggggcagatagtcaaggcaccaaactagtactcatgggtaaag
gttcggtactcatggaaaggaacactgcagctccagccaaaaactagcaa
aatagccagttagcatgatagacctgtcgttggcctgaagaccctacaaa
tgagcattagggcaaatggaacattttctcagagctgcagtgaaaatgaa
tagcctcaaacttcataactgataatgaattaagtttcaaaacaataaaa
gaggaaaaagcactgcatatttaaagataataataagaaatatttacttt
gaagataagaaagttaagtccttaagacaagaggtagcaattaaaataaa
atgtagactcgagccccgggcttccttgccagcggagttgcctgacaccc
gcaagggcccacacaggattccccacgggatcctaagacctctggtgagt
ggaacacagcgccggccccaatccaatcgcacggaacctgagactgcagc
acatagggaagcagactacccgggcctgacctggggcaaaagccccttcc
gctccactcgagcccggggctcccttgccagtggagtcgcctgacacccg
caagggcccacacaggattctacatggatcctaggacctctagtgagtgg
aacacacttctgccaggagtccggtttgaacaccagatatctgggtacct
tccctgcagagagcgctttcctgcagagatgctctacccactgaaactag
gaagagtgctaccctcccagtctgctatggaggctaacagagtcacct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaaaccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtaaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactaagcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaaatttggagctgagatga
aaggatggaccatgtagtgactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccgggcctagcaaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccta
tgagagctagagaagtacccagagctaaagggatctgcaccctatagtga
tcacattatgactacagtacccgagctctgactctagctgcttgtatcaa
agatgctagtcgccatcactggaaagaagtcatgacaccaactttatgcc
tgaaggaatgtccagccaaggggatggcgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114559146_114560221
seq2: B6Ng01-135P15.b_76_1144 (reverse)

seq1  AGGTGACTCTGTTAGCCTCTATAAGCAGAACTGGGAGGGTAGCACTCTTC  50
      ||||||||||||||||||| || ||||| |||||||||||||||||||||
seq2  AGGTGACTCTGTTAGCCTCCAT-AGCAG-ACTGGGAGGGTAGCACTCTTC  48

seq1  TTAGTTTCAGTGGGTAGAGCATTCTCTGCAGGAAAGCGCTCTTCTTGCAG  100
       |||||||||||||||||||| ||||||||||||||||||||   |||||
seq2  CTAGTTTCAGTGGGTAGAGCA-TCTCTGCAGGAAAGCGCTCT--CTGCAG  95

seq1  GGAAGGTACCCAGATATCTGGTGTTCAAACCGGACTCCTGGCAGAAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGAAGGTACCCAGATATCTGGTGTTCAAACCGGACTCCTGGCAGAAG-TG  144

seq1  TGTTCCACTCACTAGAGGTCTTAGGATCCCTTGTAGAATCCTGTGTGGGC  200
      |||||||||||||||||||| |||||| || |||||||||||||||||||
seq2  TGTTCCACTCACTAGAGGTCCTAGGAT-CCATGTAGAATCCTGTGTGGGC  193

seq1  CCTTGCGGGTGTCAGGCGACTCCACTGGCAAGGAAGCCCCGGGCTCGAGT  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTTGCGGGTGTCAGGCGACTCCACTGGCAAGGGAGCCCCGGGCTCGAGT  243

seq1  GGAGCGGAAGGGGCTTTTGCCCCAGGTCAGGCCCGGGTAGTCTGCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGAAGGGGCTTTTGCCCCAGGTCAGGCCCGGGTAGTCTGCTTCCC  293

seq1  TATGTGCTGCAGTCTCAGGTTCCGTGCGATTGGATTGGGGCCGGCGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTGCAGTCTCAGGTTCCGTGCGATTGGATTGGGGCCGGCGCTGT  343

seq1  GTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGGAATCCTGTGTGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGGAATCCTGTGTGGGCC  393

seq1  CTTGCGGGTGTCAGGCAACTCCGCTGGCAAGGAAGCCCGGGGCTCGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGGGTGTCAGGCAACTCCGCTGGCAAGGAAGCCCGGGGCTCGAGTC  443

seq1  TACATTTTATTTTAATTGCTACCTCTTGTCTTAAGGACTTAACTTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTATTTTAATTGCTACCTCTTGTCTTAAGGACTTAACTTTCTTA  493

seq1  TCTTCAAAGTAAATATTTCTTATTATTATCTTTAAATATGCAGTGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAGTAAATATTTCTTATTATTATCTTTAAATATGCAGTGCTTTT  543

seq1  TCCTCTTTTATTGTTTTGAAACTTAATTCATTATCAGTTATGAAGTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTATTGTTTTGAAACTTAATTCATTATCAGTTATGAAGTTTGA  593

seq1  GGCTATTCATTTTCACTGCAGCTCTGAGAAAATGTTCCATTTGCCCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCATTTTCACTGCAGCTCTGAGAAAATGTTCCATTTGCCCTAAT  643

seq1  GCTCATTTGTAGGGTCTTCAGGCCAACGACAGGTCTATCATGCTAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTGTAGGGTCTTCAGGCCAACGACAGGTCTATCATGCTAACTGG  693

seq1  CTATTTTGCTAGTTTTTGGCTGGAGCTGCAGTGTTCCTTTCCATGAGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGCTAGTTTTTGGCTGGAGCTGCAGTGTTCCTTTCCATGAGTAC  743

seq1  CGAACCTTTACCCATGAGTACTAGTTTGGTGCCTTGACTATCTGCCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCTTTACCCATGAGTACTAGTTTGGTGCCTTGACTATCTGCCCCAT  793

seq1  CTCTGGAAAGATTTTTGCCTGTGAGGCACGCCTGAGGTGCTATCCCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAAGATTTTTGCCTGTGAGGCACGCCTGAGGTGCTATCCCTGGG  843

seq1  TGACAGACCTCTGCTTGCTCTCTCTTAAAAGGATTTATTTACCATCTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACCTCTGCTTGCTCTCTCTTAAAAGGATTTATTTACCATCTTGT  893

seq1  ACAACTAGGAAACTGTCTTGTCCTGGAAAGTGTGTATTTGCACTTTTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAGGAAACTGTCTTGTCCTGGAAAGTGTGTATTTGCACTTTTTAC  943

seq1  CCTGGACTTCTAAGCTTGGATTCTATGACTGATACTGGACACTATTTGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACTTCTAAGCTTGGATTCTATGACTGATACTGGACACTATTTGTA  993

seq1  ACTGCCAGTTTTCCACCTATTCACAAGTTCCAGAAATAATGACTCTGAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGTTTTCCACCTATTCACAAGTTCCAGAAATAATGACTCTGAGT  1043

seq1  CAAAATCATTTGTGAACAATTGGGAC  1076
      ||||||||||||||||||||||||||
seq2  CAAAATCATTTGTGAACAATTGGGAC  1069