BAC Information

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BAC

Clone NameB6Ng01-135P19
Chromosome3 (Build37)
Map Location 82,617,547 - 82,776,924
singlet/doubletdoublet
Overlap geneEG633285, Lrat
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940
Downstream geneFgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135P19.bB6Ng01-135P19.g
ACCDH935886DH935887
length1,1071,137
definitionDH935886|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P19, 5' end.DH935887|Mus musculus domesticus DNA, BAC clone: B6Ng01-135P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,775,812 - 82,776,924)(82,617,547 - 82,618,703)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaagaacaccacagaccagaatcttctgc
ggcaaaactttattgcttacatcttcaggagcaggagtgcaagaagcaag
agagagagaaaacgaaaccccgtccctattaaggagaattctccttcgcc
taggacgtgtcactccctgattggctgcagcccatcggccgagttgacgt
cacggggaaggcagagcacatggagtagagaaccaccctcggcatatgcg
cagattatttgtttaccacttagaacacagctgtcagcgccatcttgtaa
cggcgaatgtgggcgcggctcccaacagttggaagcttggtgcctagtgt
ggctctgttgagatgacaagaactgatgtggggcgaaggggaagataatt
atgtcaaggcaggcaccaccctcctgaatggtcaattctgccttgtggga
aaggtcaggttttagggactctcctgagagaatgggctgctgatgtgttc
agctgtctctgctttcttttccatgcctgctccttcagtaagaagtggtt
ccattttctttttctgccatgtattgatatagtcaaggagtcgtcaccaa
gacacagagactgtgctatttagaatctccggacctcagaacaattaaca
actgtaatctttcaatgttgtccaccatcagatactgtactacagcaata
ccagacaaagaaacatatacctcagtagtattttccagaaaacattgata
ttttttattttgagacaggatctctctatgtagtccaagaactcactatg
tagaacagctgaccttgaacttgcagagatctgtctgcctctggctccaa
gctgctgggaattagaggtatactctaccatgcccaacaatttatgtttt
aatattgacattttacttcaagagaaccatacattgttgctgatctggat
catacta
gaattcccctatactggtgcatagaaccgtcacaggacctagggtctctc
ctcccgttgatgactgactaggccatcctctgctacatatacagctagaa
caagtttccaccatgtgttttctttgtctaatctattttctaaggtacag
tctttatttggactttgtatttctccctagggcaacaggaaaatcgtttt
ttttgtttgtttgtttgtttgtttgtttaattttcctttcctctcctctt
gcctctgaacttcctgatgggaaaatcattgctacaaagtaactgaacag
cacgactttatgaacatagtccttccttttagttctgagacacaggaagt
aatttctaactatgacataacttaataatattgtgtatttataaaatatg
ataaactataaaacatttgtgctaatataaggaagtatctgtcagtttta
aaatcataggtaaatatgtactactgaattttatttcctgtgcctgaatg
gtaaaggcaacagcagtttgtataaacaacaacaaaactgagtatcaaag
atgcatttaatattgctttgctttaaataaaaccagaataatctttaaaa
aggaaacatttgagtcatttccgaagcatttgatttatgtaggagttctg
acttgatttatggctgttaagcagaaaagaaagataaataacagagaaac
agtacattgctgctttaataaaaatgtatgaactactttccatattaatc
acctatttcatggaccaatgaccctgaaaacaatagctaaaatattcaat
tattaaaatgcagcaaaaaaaaaaatttcattcaatgttgtttttcttct
tcccaagtttgtttgggtttgggttttggtttgttggggcccatcactga
gcacaccctggccaattagcatgcttaaaaaggcctgtttgtatatgcta
agcctaataaatcaggcatcctatgctataggtatgatctgtgtaaaatg
atggttctcattacaatgctataatcccatgaaccatgcattacctgata
gcatgatgaatccctcagaatgcatgtgtggagggtcactatgtgcctgt
ttattccagatttgagtgtgacagagaatagccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82775812_82776924
seq2: B6Ng01-135P19.b_47_1153 (reverse)

seq1  TAGTATGATTCAGATCAGCAACCAATGTTATGGTTCTTCTTTTGAGTAAA  50
      ||||||||| ||||||||||| ||||| |||||||||   ||  ||||||
seq2  TAGTATGATCCAGATCAGCAA-CAATG-TATGGTTCT--CTTGAAGTAAA  46

seq1  ATTGTC-ATATTAAAAACATTAAATTGTTGGGCATGGTAGAGTATACCTC  99
      | |||| ||||| |||||| ||||||||||||||||||||||||||||||
seq2  A-TGTCAATATT-AAAACA-TAAATTGTTGGGCATGGTAGAGTATACCTC  93

seq1  TAATT-CCAGCAGCTTGGGAGCCAGAGGCAGACAGATCTCTGCAAGTTCA  148
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  TAATTCCCAGCAGCTT-GGAGCCAGAGGCAGACAGATCTCTGCAAGTTCA  142

seq1  AGGTCAGCCTGTTCTACATAGTGAGTTCTTGGACTACATAGAGAGATCCT  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAG-CTGTTCTACATAGTGAGTTCTTGGACTACATAGAGAGATCCT  191

seq1  GTCTCAAAAT-AAAAATATCAATGTTTTCTGGAAAATACTACTGAGGTAT  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAATAAAAAATATCAATGTTTTCTGGAAAATACTACTGAGGTAT  241

seq1  ATGTTTCTTTGTCTGGTATTGCTGTAGTACAGTATCTGATGGTGGACAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTTGTCTGGTATTGCTGTAGTACAGTATCTGATGGTGGACAAC  291

seq1  ATTGAAAGATTACAGTTGTTAATTGTTCTGAGGTCCGGAGATTCTAAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGATTACAGTTGTTAATTGTTCTGAGGTCCGGAGATTCTAAATA  341

seq1  GCACAGTCTCTGTGTCTTGGTGACGACTCCTTGACTATATCAATACATGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCTCTGTGTCTTGGTGACGACTCCTTGACTATATCAATACATGG  391

seq1  CAGAAAAAGAAAATGGAACCACTTCTTACTGAAGGAGCAGGCATGGAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGAAAATGGAACCACTTCTTACTGAAGGAGCAGGCATGGAAAA  441

seq1  GAAAGCAGAGACAGCTGAACACATCAGCAGCCCATTCTCTCAGGAGAGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGAGACAGCTGAACACATCAGCAGCCCATTCTCTCAGGAGAGTC  491

seq1  CCTAAAACCTGACCTTTCCCACAAGGCAGAATTGACCATTCAGGAGGGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACCTGACCTTTCCCACAAGGCAGAATTGACCATTCAGGAGGGTG  541

seq1  GTGCCTGCCTTGACATAATTATCTTCCCCTTCGCCCCACATCAGTTCTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCCTTGACATAATTATCTTCCCCTTCGCCCCACATCAGTTCTTG  591

seq1  TCATCTCAACAGAGCCACACTAGGCACCAAGCTTCCAACTGTTGGGAGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCAACAGAGCCACACTAGGCACCAAGCTTCCAACTGTTGGGAGCC  641

seq1  GCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCACATTCGCCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTG  691

seq1  GTAAACAAATAATCTGCGCATATGCCGAGGGTGGTTCTCTACTCCATGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAATAATCTGCGCATATGCCGAGGGTGGTTCTCTACTCCATGTG  741

seq1  CTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTCCCCGTGACGTCAACTCGGCCGATGGGCTGCAGCCAATCAG  791

seq1  GGAGTGACACGTCCTAGGCGAAGGAGAATTCTCCTTAATAGGGACGGGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACACGTCCTAGGCGAAGGAGAATTCTCCTTAATAGGGACGGGGT  841

seq1  TTCGTTTTCTCTCTCTCTTGCTTCTTGCACTCCTGCTCCTGAAGATGTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTTTCTCTCTCTCTTGCTTCTTGCACTCCTGCTCCTGAAGATGTAA  891

seq1  GCAATAAAGTTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTCCTGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAGTTTTGCCGCAGAAGATTCTGGTCTGTGGTGTTCTTCCTGGC  941

seq1  CGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAATTCCGGGACGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAATTCCGGGACGAG  991

seq1  AAAAAACTCGGGACTGGCGCAAGGAAGATCCCTCATTCCAGAACCAGAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTCGGGACTGGCGCAAGGAAGATCCCTCATTCCAGAACCAGAAC  1041

seq1  TGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGTTAAGAAGGAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGTTAAGAAGGAT  1091

seq1  TCAACTGTATGAATTC  1113
      ||||||||||||||||
seq2  TCAACTGTATGAATTC  1107

seq1: chr3_82617547_82618703
seq2: B6Ng01-135P19.g_68_1204

seq1  GAATTCCCCTATACTGGTGCATAGAACCGTCACAGGACCTAGGGTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTATACTGGTGCATAGAACCGTCACAGGACCTAGGGTCTCTC  50

seq1  CTCCCGTTGATGACTGACTAGGCCATCCTCTGCTACATATACAGCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGTTGATGACTGACTAGGCCATCCTCTGCTACATATACAGCTAGAA  100

seq1  CAAGTTTCCACCATGTGTTTTCTTTGTCTAATCTATTTTCTAAGGTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCCACCATGTGTTTTCTTTGTCTAATCTATTTTCTAAGGTACAG  150

seq1  TCTTTATTTGGACTTTGTATTTCTCCCTAGGGCAACAGGAAAATCGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTGGACTTTGTATTTCTCCCTAGGGCAACAGGAAAATCGTTTT  200

seq1  TTTTGTTTGTTTGTTTGTTTGTTTGTTTAATTTTCCTTTCCTCTCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGTTTGTTTGTTTGTTTAATTTTCCTTTCCTCTCCTCTT  250

seq1  GCCTCTGAACTTCCTGATGGGAAAATCATTGCTACAAAGTAACTGAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGAACTTCCTGATGGGAAAATCATTGCTACAAAGTAACTGAACAG  300

seq1  CACGACTTTATGAACATAGTCCTTCCTTTTAGTTCTGAGACACAGGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACTTTATGAACATAGTCCTTCCTTTTAGTTCTGAGACACAGGAAGT  350

seq1  AATTTCTAACTATGACATAACTTAATAATATTGTGTATTTATAAAATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAACTATGACATAACTTAATAATATTGTGTATTTATAAAATATG  400

seq1  ATAAACTATAAAACATTTGTGCTAATATAAGGAAGTATCTGTCAGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATAAAACATTTGTGCTAATATAAGGAAGTATCTGTCAGTTTTA  450

seq1  AAATCATAGGTAAATATGTACTACTGAATTTTATTTCCTGTGCCTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAGGTAAATATGTACTACTGAATTTTATTTCCTGTGCCTGAATG  500

seq1  GTAAAGGCAACAGCAGTTTGTATAAACAACAACAAAACTGAGTATCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCAACAGCAGTTTGTATAAACAACAACAAAACTGAGTATCAAAG  550

seq1  ATGCATTTAATATTGCTTTGCTTTAAATAAAACCAGAATAATCTTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAATATTGCTTTGCTTTAAATAAAACCAGAATAATCTTTAAAA  600

seq1  AGGAAACATTTGAGTCATTTCCGAAGCATTTGATTTATGTAGGAGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACATTTGAGTCATTTCCGAAGCATTTGATTTATGTAGGAGTTCTG  650

seq1  ACTTGATTTATGGCTGTTAAGCAGAAAAGAAAGATAAATAACAGAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTTATGGCTGTTAAGCAGAAAAGAAAGATAAATAACAGAGAAAC  700

seq1  AGTACATTGCTGCTTTAATAAAAATGTATGAACTACTTTCCATATTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTGCTGCTTTAATAAAAATGTATGAACTACTTTCCATATTAATC  750

seq1  ACCTATTTCATGGACCAATGACCCTGAAAACAATAGCTAAAATATTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTCATGGACCAATGACCCTGAAAACAATAGCTAAAATATTCAAT  800

seq1  TATTAAAATGCAGCAAAAAAAAAAATTTCATTCAATGTTGTTTTTCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATGCAGCAAAAAAAAAAATTTCATTCAATGTTGTTTTTCTTCT  850

seq1  TCCCAAGTTTGTTT-GGTTTTGGTTTTGGTTTGTTTGGGGCCCATCACTG  899
      |||||||||||||| ||||| |||||||||||| ||||||||||||||||
seq2  TCCCAAGTTTGTTTGGGTTTGGGTTTTGGTTTG-TTGGGGCCCATCACTG  899

seq1  AGCACACCCTGGCCAATTAGCATGCTTTAAAAAGGCCTGTTTGTATATGC  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCACACCCTGGCCAATTAGCATGC-TTAAAAAGGCCTGTTTGTATATGC  948

seq1  TAAGCCTAATAAATCAGGCATCCTATGCTATTAGGTTTATGAATCTTGTG  999
      |||||||||||||||||||||||||||||| ||||  |||| ||| ||||
seq2  TAAGCCTAATAAATCAGGCATCCTATGCTA-TAGG--TATG-ATC-TGTG  993

seq1  TAAAAATGATTGGGTTCTTCATTTACATGCTTATATTCCCCATGAACCAA  1049
      | ||||||||  ||||| |||||   |||| |||| | |||||||||| |
seq2  T-AAAATGAT--GGTTC-TCATTACAATGC-TATAAT-CCCATGAACC-A  1036

seq1  TGCAATTAACCTGTATAGGCATGATGGAATTCACTCAGTATGCATGTGTT  1099
      ||||  | ||||| ||| ||||||||  | || ||||| |||||||||| 
seq2  TGCA--TTACCTG-ATA-GCATGATG--AATCCCTCAGAATGCATGTGTG  1080

seq1  GAGAGTCACTATGTGCCTGTGTTATTCTGAATTTTGAGTGTGACAGAGAA  1149
      ||| |||||||||||||||| ||||||  |  ||||||||||||||||||
seq2  GAGGGTCACTATGTGCCTGT-TTATTC-CAGATTTGAGTGTGACAGAGAA  1128

seq1  TAG-CATGG  1157
      ||| |||||
seq2  TAGCCATGG  1137