BAC Information

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BAC

Clone NameB6Ng01-136B24
Chromosome3 (Build37)16 (Build37)
Map Location 55,975,728 - 55,976,59260,775,890 - 60,776,456
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136B24.bB6Ng01-136B24.g
ACCDH935984DH935985
length868924
definitionDH935984|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B24, 5' end.DH935985|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,975,728 - 55,976,592)(60,775,890 - 60,776,456)
sequence
gaattccatttgccagaatgtggaattatgaatcttgtgatcatgaatac
ccctagaattagggaccaatttacagtttttttggttaagtgacaacaat
cagatgtttgtctgtgtttgtgtagaggactcacacgtacgtacgtacgt
acgtacgtgtttgtgtgtgtgtgtgtgtagtgcatgtatgtatgtttaaa
ctattgtttattagttatgtgggggaatgtttgagcttttagtttcttat
gtagctatatattgtcagcttatgaagttacaactaagaaggatgtatgt
tttgaggggaccaagagtaatgcttataatattaaaattagactgaatgc
agtaacttggcattgtcttttttaaaaaacttattttccacttaatggtg
aaaaggtggtgagcagcacattgtttgtttctgataaaaagagtaaaact
attggtatcaaaaatgtctgtctgtctatttgtgaataataagacctgag
tattacacattttttcaggttttgactgctcagcatctggtctttttgct
gttaacagtttaagatttcctgatactcattttaggaatcatattttctc
atgtattttggggtttccttggaccatattaaaaaactggcaaatggttc
tttcagcaacagatactgtttacaaaatgcagttgtgcttaaacagttta
atagcttatttttattcatatgcagaaattttcagtggagctgtttaaaa
tgttagaaagtgtggagttgactggcagtccgccacaatataaggtgaaa
tctccttgataatggaggtggcccaaagaatattttaacctagaggtgga
ctgctaagggaatctttg
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcacgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggcttttttttggttgggagactattaataactgcttctatttc
tttaggtgatatgggactgtttagatgatcaacttgatcctgattcaact
ttggtacctggtatctgtccagaaattcgtccatttcgtccaggtttttc
cagtttttgttgagtatagccttttgtagaaggatctgatggtgttttgg
atttcttcaggatctgttgttatgtctcccttttcatttctgattttggt
aattaggatttgtccctgtgccctttagagagtctagctaaaggttatct
atcttgttgattttctcaaagaacccacttcctcgtttgggttaattctt
tgaatagttctttttgtttccactggttgatttcaccccggagtttgata
tttccggcctctactcctcttggagaattgcttccttttttctaaggctt
ttaatatgtgttgccaagctgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55975728_55976592
seq2: B6Ng01-136B24.b_43_910 (reverse)

seq1  CAAAGATTCCCTCTGCAGTCCACCTCTTAGTTCAAATA-TCTTTGTGCCA  49
      ||||||||||||  |||||||||||||  ||| ||||| |||||| ||||
seq2  CAAAGATTCCCTTAGCAGTCCACCTCTAGGTTAAAATATTCTTTGGGCCA  50

seq1  CCTCCATTATCAAGGAGATTTCACCTTCTATTGTGGCGGACTGCCAGTCA  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTCCATTATCAAGGAGATTTCACCTTATATTGTGGCGGACTGCCAGTCA  100

seq1  ACTCCCCACTTTCTAACATTTT-AACAGCTCCACTGAAAATTTCTGCATA  148
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTCCACACTTTCTAACATTTTAAACAGCTCCACTGAAAATTTCTGCATA  150

seq1  TGAATAAAAATAAGCTATTAAACTGTTTAAGCACAACTGCATTTTGTAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAATAAGCTATTAAACTGTTTAAGCACAACTGCATTTTGTAAA  200

seq1  CAGTATCTGTTGCTG-AAGAACCATTTGCCAGTTTTTTAATATGGTCCAA  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGTATCTGTTGCTGAAAGAACCATTTGCCAGTTTTTTAATATGGTCCAA  250

seq1  GGAAACCCCAAAATACATGAGAAAATATGATTCCTAAAATGAGTATCAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCCAAAATACATGAGAAAATATGATTCCTAAAATGAGTATCAGG  300

seq1  AAATCTTAAACTGTTAACAGCAAAAAGACCAGATGCTGAGCAGTCAAAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAAACTGTTAACAGCAAAAAGACCAGATGCTGAGCAGTCAAAAC  350

seq1  CTGAAAAAATGTGTAATACTCAGGTCTTATTATTCACAAATAGACAGACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAAATGTGTAATACTCAGGTCTTATTATTCACAAATAGACAGACA  400

seq1  GACATTTTTGATACCAATAGTTTTACTCTTTTTATCAGAAACAAACAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTGATACCAATAGTTTTACTCTTTTTATCAGAAACAAACAATG  450

seq1  TGCTGCTCACCACCTTTTCACCATTAAGTGGAAAATAAGTTTTTTAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTCACCACCTTTTCACCATTAAGTGGAAAATAAGTTTTTTAAAAA  500

seq1  AGACAATGCCAAGTTACTGCATTCAGTCTAATTTTAATATTATAAGCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGCCAAGTTACTGCATTCAGTCTAATTTTAATATTATAAGCATT  550

seq1  ACTCTTGGTCCCCTCAAAACATACATCCTTCTTAGTTGTAACTTCATAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGGTCCCCTCAAAACATACATCCTTCTTAGTTGTAACTTCATAAG  600

seq1  CTGACAATATATAGCTACATAAGAAACTAAAAGCTCAAACATTCCCCCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATATATAGCTACATAAGAAACTAAAAGCTCAAACATTCCCCCAC  650

seq1  ATAACTAATAAACAATAGTTTAAACATACATACATGCACTACACACACAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAATAAACAATAGTTTAAACATACATACATGCACTACACACACAC  700

seq1  ACACACAAACACGTACGTACGTACGTACGTACGTGTGAGTCCTCTACACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAACACGTACGTACGTACGTACGTACGTGTGAGTCCTCTACACA  750

seq1  AACACAGACAAACATCTGATTGTTGTCACTTAACCAAAAAAACTGTAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGACAAACATCTGATTGTTGTCACTTAACCAAAAAAACTGTAAAT  800

seq1  TGGTCCCTAATTCTAGGGGTATTCATGATCACAAGATTCATAATTCCACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCTAATTCTAGGGGTATTCATGATCACAAGATTCATAATTCCACA  850

seq1  TTCTGGCAAATGGAATTC  865
      ||||||||||||||||||
seq2  TTCTGGCAAATGGAATTC  868

seq1: chr16_60775890_60776456
seq2: B6Ng01-136B24.g_427_991 (reverse)

seq1  TAGCAGCTTGACAACACAT-CTAAAAGCCCTAGAAAAAAAGGAAGCAAAT  49
      |||||||||| ||||||||  |||||||| ||| |||||||||||| |||
seq2  TAGCAGCTTGGCAACACATATTAAAAGCCTTAG-AAAAAAGGAAGC-AAT  48

seq1  TCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAAT  99
      ||  |||||||||||||| ||| |||||| ||||||||| ||||||||||
seq2  TC-TCCAAGAGGAGTAGA-GGCCGGAAAT-ATCAAACTCCGGGGTGAAAT  95

seq1  CAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAA-CCAAACGAGG  148
      ||||| ||||||||||| ||||||||||||||||||||| ||||||||||
seq2  CAACC-AGTGGAAACAAAAAGAACTATTCAAAGAATTAACCCAAACGAGG  144

seq1  -AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGAC  197
       ||| ||||||||||||||||||||||||||||| |||| ||||||||||
seq2  AAGTGGGTTCTTTGAGAAAATCAACAAGATAGAT-AACCTTTAGCTAGAC  193

seq1  TCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAA  247
      || ||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TCTCTAAAGGGCACAGGGAC-AAATCCTAATTACCAAAATCAGAAATGAA  242

seq1  AAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATC  292

seq1  CTTCTACAAAAGGCTATACTCAAC-AAAACTGG-AAAACCTGGACGAAAT  345
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  CTTCTACAAAAGGCTATACTCAACAAAAACTGGAAAAACCTGGACGAAAT  342

seq1  GGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAG  395
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAG  392

seq1  TTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATT  445
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATT  442

seq1  AATAGTCTCCCAACC-AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAG  494
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATAGTCTCCCAACCAAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAG  492

seq1  AGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTA  542

seq1  TTTCACAAAATAGAAGTAGAAGG  567
      |||||||||||||||||||||||
seq2  TTTCACAAAATAGAAGTAGAAGG  565