BAC Information

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BAC

Clone NameB6Ng01-136C23
Chromosome3 (Build37)
Map Location 48,200,032 - 48,201,147
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039426, LOC666202, LOC666208
Downstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136C23.bB6Ng01-136C23.g
ACCDH936027DH936028
length1,0001,113
definitionDH936027|Mus musculus domesticus DNA, BAC clone: B6Ng01-136C23, 5' end.DH936028|Mus musculus domesticus DNA, BAC clone: B6Ng01-136C23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtcaaggtgtcaagaggccttatcttctttgtggttcagtg
tgtgtgagagagtatgtgtgtgagtgagtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtttgtgtgtaagctttctcaatcagactactttgttttcttttt
agataaatattaatactttgtgaattttccacattgttttctttctggct
acagcgacaatcttttcatcttatggttctgttgattgctttctgctcaa
caggtgatgaagcctatatttagatgcaggtttaaaatttgaactgtgag
ttttatgtctatgggagaaccgaccatgagaagaaattcttagttatttt
tgtctgtttaaatttacttgaaatggtacaacatatcgtattctaccttg
aactaacccaaaacatgtatttaatataaattgaattctacttagagaaa
attaattatcattcatacccagatgtgtgtagtatgtgtgttcaggtcca
gctgtcctctgtttcctatctcttgggatgtccagacaagctgcacacta
gcctggaatgatgacacagagtccagaactggtgggatctgcaggatccc
tggctagctaggagtgagagcctgggttgaagaaacagctctcttagatg
atcttagttgtgcattaacctttatttgaagtgaggttgtacacatacac
tatatttggggtgaaccatggctgtatttgaaccttggcgagtgggaagg
gtttcttcttagtgtcaagtttcattggctcaagtttaaattactgtgaa
tgcctcatttgtatgtagaatcattccaggaatcccaggaacttgctggg
cagatttttatggggaaagaggaatttcaaattgtaggcttgccaagtat
agggcatgaggtgtctgcacccagacaagacagagaaggggtggccacag
tggttaagtgaatcaatgagctattagactgactctgaacagaaatccca

gaattctctaatataattatgagaaagatattcgaggactggtacaaaca
ttggaatgtgacacttgatacatgagccacatgcaatggaagagataaaa
gtcttacctgtccattttcacatgttgaacatatctgaaatttatagaga
cctgaattgtctttataatattggaagacattaaaaggtttgtatatttg
ctgatggatccaggacttttgaatgtaatccttcacatatgaactcctct
ctgcatatgaaattttcagatttgctggttttcctgttttgaatatcgga
ttttcatataaggcatactggatgcgagtgagaagtgggtttttaagaga
gtggctgtacttacaaaatctgtacagttttatgtattggtaggtcagac
cccacaatggaatatacagttactgaaatataaatacaaagaacataagt
ggattccaaggcaggtggtctgacacaaataacagcagtcagtcaccaaa
gcttgcttgggagccactcatatgcatatagaagtttctaaacctgaatt
acgtctattcttccagacatggtgtataaaatgtgggaaacctaattagc
tgcttgtagaatctcacactcgactgctgttatgtagaacaatattttgg
caatatcaaagtagaaaacatgaagctctgtctttgttgaaaattggcaa
agttgtaatccaaggcagcaatgtgttcttatgggattcaaactgaaatt
tatatgaagatgtagaagtggtaatttggatactaatatttatatacaag
tatcatatttaatctggccataagataaatcttcaagcacaactgggtaa
ttgtacaagtctaatcacggatattgtgctggctccatatagaagtgatt
ggattctcagtgcaaaaacttgatcactgagctctagaaaataaggatgg
gaatttgaggctgatgagtttaaatgtgacaaatcataccccggacacct
tcagcacttttctgctttcctggcagccatgaggtggagcatgtcacatc
atacgttccttcttcatgaatagtcttcttactgtaagcccaggaaaaaa
taataacgacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48200032_48201147
seq2: B6Ng01-136C23.g_66_1178

seq1  GAATTCTCTAATATAATTATGAGAAAGATATTCGAGGACTGGTACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATATAATTATGAGAAAGATATTCGAGGACTGGTACAAACA  50

seq1  TTGGAATGTGACACTTGATACATGAGCCACATGCAATGGAAGAGATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGTGACACTTGATACATGAGCCACATGCAATGGAAGAGATAAAA  100

seq1  GTCTTACCTGTCCATTTTCACATGTTGAACATATCTGAAATTTATAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACCTGTCCATTTTCACATGTTGAACATATCTGAAATTTATAGAGA  150

seq1  CCTGAATTGTCTTTATAATATTGGAAGACATTAAAAGGTTTGTATATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTGTCTTTATAATATTGGAAGACATTAAAAGGTTTGTATATTTG  200

seq1  CTGATGGATCCAGGACTTTTGAATGTAATCCTTCACATATGAACTCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGATCCAGGACTTTTGAATGTAATCCTTCACATATGAACTCCTCT  250

seq1  CTGCATATGAAATTTTCAGATTTGCTGGTTTTCCTGTTTTGAATATCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATGAAATTTTCAGATTTGCTGGTTTTCCTGTTTTGAATATCGGA  300

seq1  TTTTCATATAAGGCATACTGGATGCGAGTGAGAAGTGGGTTTTTAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATAAGGCATACTGGATGCGAGTGAGAAGTGGGTTTTTAAGAGA  350

seq1  GTGGCTGTACTTACAAAATCTGTACAGTTTTATGTATTGGTAGGTCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTACTTACAAAATCTGTACAGTTTTATGTATTGGTAGGTCAGAC  400

seq1  CCCACAATGGAATATACAGTTACTGAAATATAAATACAAAGAACATAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATGGAATATACAGTTACTGAAATATAAATACAAAGAACATAAGT  450

seq1  GGATTCCAAGGCAGGTGGTCTGACACAAATAACAGCAGTCAGTCACCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCAAGGCAGGTGGTCTGACACAAATAACAGCAGTCAGTCACCAAA  500

seq1  GCTTGCTTGGGAGCCACTCATATGCATATAGAAGTTTCTAAACCTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTGGGAGCCACTCATATGCATATAGAAGTTTCTAAACCTGAATT  550

seq1  ACGTCTATTCTTCCAGACATGGTGTATAAAATGTGGGAAACCTAATTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTATTCTTCCAGACATGGTGTATAAAATGTGGGAAACCTAATTAGC  600

seq1  TGCTTGTAGAATCTCACACTCGACTGCTGTTATGTAGAACAATATTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTAGAATCTCACACTCGACTGCTGTTATGTAGAACAATATTTTGG  650

seq1  CAATATCAAAGTAGAAAACATGAAGCTCTGTCTTTGTTGAAAATTGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCAAAGTAGAAAACATGAAGCTCTGTCTTTGTTGAAAATTGGCAA  700

seq1  AGTTGTAATCCAAGGCAGCAATGTGTTCTTATGGGATTCAAACTGAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAATCCAAGGCAGCAATGTGTTCTTATGGGATTCAAACTGAAATT  750

seq1  TATATGAAGATGTAGAAGTGGTAATTTGGATACTAATATTTATATACAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAGATGTAGAAGTGGTAATTTGGATACTAATATTTATATACAAG  800

seq1  TATCATATTTAATCTGGCCATAAGATAAATCTTCAAGCACAACTGGGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATTTAATCTGGCCATAAGATAAATCTTCAAGCACAACTGGGTAA  850

seq1  TTGTACAAGTCTAATCACGGATATTGTGCTGGCTCCATATAGAAGTGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAGTCTAATCACGGATATTGTGCTGGCTCCATATAGAAGTGATT  900

seq1  GGATTCTCAGTGCAAAAACTTGATCACTGAGCTCTTAGAAAATAAGGATG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGATTCTCAGTGCAAAAACTTGATCACTGAGCTC-TAGAAAATAAGGATG  949

seq1  GGAATTTTGAGGCTGATGAGTTTAAATGTGACAAATCATACCCCGGACAC  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAA-TTTGAGGCTGATGAGTTTAAATGTGACAAATCATACCCCGGACAC  998

seq1  CTTCAAGCAC-TTTCTGC-TTCCTGGCAGCCATGAGGT-GAGCATGTCTA  1047
      |||| ||||| ||||||| ||||||||||||||||||| ||||||||| |
seq2  CTTC-AGCACTTTTCTGCTTTCCTGGCAGCCATGAGGTGGAGCATGTC-A  1046

seq1  CATCAATACGTTCCTTCTCCATG-ATAGTCTTCCTTACTGTAGGCCCAGG  1096
      |||| ||||||||||||| |||| |||||||| ||||||||| |||||||
seq2  CATC-ATACGTTCCTTCTTCATGAATAGTCTT-CTTACTGTAAGCCCAGG  1094

seq1  AAAAAAATAATACAGACAGC  1116
       |||||||||||  ||||||
seq2  -AAAAAATAATAACGACAGC  1113