BAC Information

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BAC

Clone NameB6Ng01-136H19
Chromosome3 (Build37)
Map Location 48,725,833 - 48,727,002
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
Downstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136H19.bB6Ng01-136H19.g
ACCDH936248DH936249
length1,1701,103
definitionDH936248|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H19, 5' end.DH936249|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaattagaagagctagatacaaagtagattgtatcaaaagaatt
tcctctttaaaaattattatattagtaatcttgaacaaaggtatttaata
ttaaaagttgcttaaggctaatgagcatgtgaaaagtttctcagaaaaaa
acatgagttactctaaactccatatgtgtataaaatcaatctttcatatc
agaaatttgttttgttctggacagaagtagcaagtacagataccatttgc
atattttatattctgttttttgtttttgttttttcacatgtgtcccttac
ctacatgacatattcagatacggatgatgaatattccagtttattatcaa
acccaaatgagataactgcccattggaccctcatagcctgaccagaaaca
taatacataatgttcattggacttagataacatttctcttgctgatatct
aggtggaatgaatgggtctaatgtctttcagaaatattttcataaacaag
acatagtttttgaaatttcacaagtcttaagatgtattcaaactaatctt
aaatgctatgtaggcctgagatacacaaaatcagcatgccagatttaccc
aagtatgattgatgtatatatacacacatacatacatacacacacacata
cacatatacatttcaccttgggttgaacaaagtaacaaaagaatttagga
atctgctaaataacaatgtatacttttctttgtttgtttgtttaaattct
aggccttagcagatagctttggtactactataagttgcaaagttggctac
tgagacataaatcaaaagtcttttccagttgtgaacccatcaataatgaa
tagcatggcagaacatgctcatgatgcatgctgccatgaaatttaaaagg
gcaaatattggattttaattgtgtcagggttctcagttcccttgaggcag
cagagcagaggagcatcaggggagggggaggactttgtcttatgagatac
ttagggttgttgtattaactataaaaagtttaattacctaagtctaagtt
tcctctactgtagctgaactggcttctgtggttctcctaagctagaaggc
tgcagtctctggcattagcaatatcacctaaacagccaggatctaggtaa
agtagcctttgttctaactc
gaattcttttagagcttcttgaatatgaatgggcatagggaaatttttac
tagagcataggcagactcttaggtccatcatccctgaataaacagattct
tcattcaggggcctccattaattctcaatacctcatttaaagggcatgag
atttcacgagcctgttctccatccattaaattattttggaaggtatagtc
ctatagagatcttgtgcatgcagtcatggtggctgtgattgatgtttgca
atagttggtcatatctagctgtttactactgtgaaaattaattccctctt
catctcctgtctgtctgtccatctttatgagacacaaaggtgtctcatat
ggcattttttttataaatgagttttaatttgctgttcttccatgttgtat
aataattttcattagtatttattcctgattttagaattttatcatttttg
attcatttacaattcatttacactttcatttctccatttatttgtttatt
cactctactgccctatcagtgatcctgcttccagtgccccctacacacac
accattcctctttttccccttctcctttgagaaggtggagccctccccca
ccccacccccaccctgccctgtattttttccaccccagcacaacaagtct
cttcagtgctaggcagatcatcttccactgaggccagacaaggctgccta
gacaggggaacagattccatagacagacaacagctttatagtctgccctt
ttctccagttgttcggagacgcacatgaaaacctagctgcatttttaaga
ctccctgagctccattcaatatttgtttaactcagctgctgggtggagcc
cctcataaaacagtcatgctggactcccatctgcaagcataacagagtat
cattaatagtgtcagggattggtggttggccatgagatgggtcaccagtt
ggccagttattggtaaacattcccttacatctgcttccatcttttgtcct
gaattttttgtatccagaaaattttggtcaaagtttgtgtggtcattttt
cctctatccctccatctgggggtcttgcctggatagagaaggtgcctctt
tag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48725833_48727002
seq2: B6Ng01-136H19.b_47_1216

seq1  GAATTCAAATTAGAAGAGCTAGATACAAAGTAGATTGTATCAAAAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTAGAAGAGCTAGATACAAAGTAGATTGTATCAAAAGAATT  50

seq1  TCCTCTTTAAAAATTATTATATTAGTAATCTTGAACAAAGGTATTTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTAAAAATTATTATATTAGTAATCTTGAACAAAGGTATTTAATA  100

seq1  TTAAAAGTTGCTTAAGGCTAATGAGCATGTGAAAAGTTTCTCAGAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTGCTTAAGGCTAATGAGCATGTGAAAAGTTTCTCAGAAAAAA  150

seq1  ACATGAGTTACTCTAAACTCCATATGTGTATAAAATCAATCTTTCATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTTACTCTAAACTCCATATGTGTATAAAATCAATCTTTCATATC  200

seq1  AGAAATTTGTTTTGTTCTGGACAGAAGTAGCAAGTACAGATACCATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGTTTTGTTCTGGACAGAAGTAGCAAGTACAGATACCATTTGC  250

seq1  ATATTTTATATTCTGTTTTTTGTTTTTGTTTTTTCACATGTGTCCCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATATTCTGTTTTTTGTTTTTGTTTTTTCACATGTGTCCCTTAC  300

seq1  CTACATGACATATTCAGATACGGATGATGAATATTCCAGTTTATTATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGACATATTCAGATACGGATGATGAATATTCCAGTTTATTATCAA  350

seq1  ACCCAAATGAGATAACTGCCCATTGGACCCTCATAGCCTGACCAGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATGAGATAACTGCCCATTGGACCCTCATAGCCTGACCAGAAACA  400

seq1  TAATACATAATGTTCATTGGACTTAGATAACATTTCTCTTGCTGATATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATAATGTTCATTGGACTTAGATAACATTTCTCTTGCTGATATCT  450

seq1  AGGTGGAATGAATGGGTCTAATGTCTTTCAGAAATATTTTCATAAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAATGAATGGGTCTAATGTCTTTCAGAAATATTTTCATAAACAAG  500

seq1  ACATAGTTTTTGAAATTTCACAAGTCTTAAGATGTATTCAAACTAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTTTTGAAATTTCACAAGTCTTAAGATGTATTCAAACTAATCTT  550

seq1  AAATGCTATGTAGGCCTGAGATACACAAAATCAGCATGCCAGATTTACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTATGTAGGCCTGAGATACACAAAATCAGCATGCCAGATTTACCC  600

seq1  AAGTATGATTGATGTATATATACACACATACATACATACACACACACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGATTGATGTATATATACACACATACATACATACACACACACATA  650

seq1  CACATATACATTTCACCTTGGGTTGAACAAAGTAACAAAAGAATTTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATACATTTCACCTTGGGTTGAACAAAGTAACAAAAGAATTTAGGA  700

seq1  ATCTGCTAAATAACAATGTATACTTTTCTTTGTTTGTTTGTTTAAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTAAATAACAATGTATACTTTTCTTTGTTTGTTTGTTTAAATTCT  750

seq1  AGGCCTTAGCAGATAGCTTTGGTACTACTATAAGTTGCAAAGTTGGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTAGCAGATAGCTTTGGTACTACTATAAGTTGCAAAGTTGGCTAC  800

seq1  TGAGACATAAATCAAAAGTCTTTTCCAGTTGTGAACCCATCAATAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATAAATCAAAAGTCTTTTCCAGTTGTGAACCCATCAATAATGAA  850

seq1  TAGCATGGCAGAACATGCTCATGATGCATGCTGCCATGAAATTTAAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGGCAGAACATGCTCATGATGCATGCTGCCATGAAATTTAAAAGG  900

seq1  GCAAATATTGGATTTTAATTGTGTCAGGGTTCTCAGTTCCCCTTGAGGCA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCAAATATTGGATTTTAATTGTGTCAGGGTTCTCAGTT-CCCTTGAGGCA  949

seq1  GCAGAGCAGAGGAGCATCAGGGGA-GGGGAAGACTTTGTCTTATGAGATA  999
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GCAGAGCAGAGGAGCATCAGGGGAGGGGGAGGACTTTGTCTTATGAGATA  999

seq1  CTTAGGGTTGTTGTA-TAACTATAAAAAGTTTAATTACCTAAGTCTAAGT  1048
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTAGGGTTGTTGTATTAACTATAAAAAGTTTAATTACCTAAGTCTAAGT  1049

seq1  TTCCTTCCTACTGTAGCTGACCTGCCTTCTGTGTTCCTCTAAGGCTAGAA  1098
      |||||  ||||||||||||| ||| |||||||| | |||  | |||||||
seq2  TTCCT--CTACTGTAGCTGAACTGGCTTCTGTGGTTCTCCTAAGCTAGAA  1097

seq1  -GCTGCAGTCTCTGGCATTTAGC-ATATCATCCTAAAACAGCAAG--ACT  1144
       |||||||||||||||| ||||| |||||| ||| ||||||| ||   ||
seq2  GGCTGCAGTCTCTGGCA-TTAGCAATATCA-CCT-AAACAGCCAGGATCT  1144

seq1  AAGTAAAGTAGCCTTTGTTCTAACTC  1170
      | ||||||||||||||||||||||||
seq2  AGGTAAAGTAGCCTTTGTTCTAACTC  1170