BAC Information

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BAC

Clone NameB6Ng01-136L16
Chromosome3 (Build37)
Map Location 60,630,547 - 60,764,873
singlet/doubletdoublet
Overlap geneLOC100040501, EG666853
Upstream geneLOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933
Downstream geneP2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136L16.bB6Ng01-136L16.g
ACCDH936426DH936427
length977900
definitionDH936426|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L16, 5' end.DH936427|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,630,547 - 60,631,523)(60,763,975 - 60,764,873)
sequence
gaattcctcctgttgaaaatagagacaggccttccgaattgttcaaaatg
cctgtgattttgtgcaagtgtatgtatcaaccatcaactagaggttattt
tccacagttaacaatttaagcctttgcacttgacactgtgtttatactgt
atccaaatcctttgctccccctttgaaatgaaattcccagggtttaggat
ggaactgatctggatttattttctacctcaaaactcgttggtagaattga
aagacatctcacaagccaagacagagcccaagcccaagaattctgttact
cttataacagttgataacatcactccacccaagctgcttggagctgcact
cggctgcttagttttggatgcttgatgttatcaactgtaccagggaaaac
taaaccagcaatgaatgttcagatcggagtagaacaaaacccgaaggagt
atgattagtgtgctctacaaaaagaaaaaagaaaaatccatgcatcttaa
ttactgtaaacccaagtttgtgagttagcaaatatctgttgctatcattt
cttaaaattcatttccatcttcctcattataaaagcagagctaaccttac
aggcttctgtggcccactgaagacatttctgtggtgaaagatgacaaaaa
gcagcagccagccccagcttcccctgggaaagccagctgcaaagttcctg
aaagcatccagatctcctttcatgtgaaaatcctgtagtctctgtctaca
gaaagaggtgagtgagtgaaccaacccctttacctaaatctcatttttac
ccaaattacgacattaggacaaaataaggattcactcttttggtattttc
ggggaaactgaatctgtcactcaaataatggtatacatatgttttggtct
aagcatatgtatgtgtgtgtgtgtgtgtgtgtgtgcatatatatatatat
atatatatatatatatatatatatata
gaattcttgaggttctgctattggacagtaaagtctcactaagtagacaa
tgatattcctacaaggtatcaatgcagaaaatcactggatcttcacctct
gccatatatatatatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtaccctttgcttatatcaggaaggcaagcagagatgggggtgttaaaa
tgctaagtacctctatgggaaaaaccaccacctttcttaaaacaacaaat
acatgaataacaatacaaacaccatatctggttactatttctgtgccact
cttgcacatagcattttacaaagaaggattttgctgaataaatgcaagat
taattgttttataatgattcaatagggaagactagaacaaagttagaaca
aacaaagtgagattcatgttggtgtactggcgtaaactaatactcttttc
catatgctagcatattgagaaattttaattctttggtatcagacagcttt
gtaaaacccatctaggatcgaggcaggagaaaagaaatcaaagcctgtta
agagaatcatggaaactagaatttccaggaaagctgacctcactctgtgg
attttgctggctccttaataagttgcaattgctctgcacattacagatct
gcaaaggaatcaccttcttttctttattccttctcctcctcctccgcctt
cttctttcttctttcttcttattccttcttccttctcctctttgctctcc
ttctcctcccctcctcttcctcatcctcctccctttctcctgctattctc
agggaagactaaaacaggcagccctttccttcccatcaagctagattctc
tctgcataaacgggattatttctaaagttccttttattttaagagtacca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60630547_60631523
seq2: B6Ng01-136L16.b_45_1021

seq1  GAATTCCTCCTGTTGAAAATAGAGACAGGCCTTCCGAATTGTTCAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTGTTGAAAATAGAGACAGGCCTTCCGAATTGTTCAAAATG  50

seq1  CCTGTGATTTTGTGCAAGTGTATGTATCAACCATCAACTAGAGGTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATTTTGTGCAAGTGTATGTATCAACCATCAACTAGAGGTTATTT  100

seq1  TCCACAGTTAACAATTTAAGCCTTTGCACTTGACACTGTGTTTATACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTTAACAATTTAAGCCTTTGCACTTGACACTGTGTTTATACTGT  150

seq1  ATCCAAATCCTTTGCTCCCCCTTTGAAATGAAATTCCCAGGGTTTAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATCCTTTGCTCCCCCTTTGAAATGAAATTCCCAGGGTTTAGGAT  200

seq1  GGAACTGATCTGGATTTATTTTCTACCTCAAAACTCGTTGGTAGAATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGATCTGGATTTATTTTCTACCTCAAAACTCGTTGGTAGAATTGA  250

seq1  AAGACATCTCACAAGCCAAGACAGAGCCCAAGCCCAAGAATTCTGTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCTCACAAGCCAAGACAGAGCCCAAGCCCAAGAATTCTGTTACT  300

seq1  CTTATAACAGTTGATAACATCACTCCACCCAAGCTGCTTGGAGCTGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAACAGTTGATAACATCACTCCACCCAAGCTGCTTGGAGCTGCACT  350

seq1  CGGCTGCTTAGTTTTGGATGCTTGATGTTATCAACTGTACCAGGGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCTTAGTTTTGGATGCTTGATGTTATCAACTGTACCAGGGAAAAC  400

seq1  TAAACCAGCAATGAATGTTCAGATCGGAGTAGAACAAAACCCGAAGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGCAATGAATGTTCAGATCGGAGTAGAACAAAACCCGAAGGAGT  450

seq1  ATGATTAGTGTGCTCTACAAAAAGAAAAAAGAAAAATCCATGCATCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGTGTGCTCTACAAAAAGAAAAAAGAAAAATCCATGCATCTTAA  500

seq1  TTACTGTAAACCCAAGTTTGTGAGTTAGCAAATATCTGTTGCTATCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTAAACCCAAGTTTGTGAGTTAGCAAATATCTGTTGCTATCATTT  550

seq1  CTTAAAATTCATTTCCATCTTCCTCATTATAAAAGCAGAGCTAACCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATTCATTTCCATCTTCCTCATTATAAAAGCAGAGCTAACCTTAC  600

seq1  AGGCTTCTGTGGCCCACTGAAGACATTTCTGTGGTGAAAGATGACAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTGTGGCCCACTGAAGACATTTCTGTGGTGAAAGATGACAAAAA  650

seq1  GCAGCAGCCAGCCCCAGCTTCCCCTGGGAAAGCCAGCTGCAAAGTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCCAGCCCCAGCTTCCCCTGGGAAAGCCAGCTGCAAAGTTCCTG  700

seq1  AAAGCATCCAGATCTCCTTTCATGTGAAAATCCTGTAGTCTCTGTCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCCAGATCTCCTTTCATGTGAAAATCCTGTAGTCTCTGTCTACA  750

seq1  GAAAGAGGTGAGTGAGTGAACCAACCCCTTTACCTAAATCTCATTTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTGAGTGAGTGAACCAACCCCTTTACCTAAATCTCATTTTTAC  800

seq1  CCAAATTACGACATTAGGACAAAATAAGGATTCACTCTTTTGGTATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTACGACATTAGGACAAAATAAGGATTCACTCTTTTGGTATTTTC  850

seq1  GGGGAAACTGAATCTGTCACTCAAATAATGGTATACATATGTTTTGGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAACTGAATCTGTCACTCAAATAATGGTATACATATGTTTTGGTCT  900

seq1  AAGCATATGTATGTGTGTGTGTGTGTGTGTGTGTGCATATATATATATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATGTATGTGTGTGTGTGTGTGTGTGTGTGCATATATATATATAT  950

seq1  ATATATATATATATATATATATATATA  977
      |||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATA  977

seq1: chr3_60763975_60764873
seq2: B6Ng01-136L16.g_66_961 (reverse)

seq1  ACTCTTAAAATATAAAAGGAACTTTAGAAATAATCCCGTTTAGTGCAGAG  50
      |||||||||  ||||||||||||||||||||||||||||||| |||||||
seq2  ACTCTTAAA--ATAAAAGGAACTTTAGAAATAATCCCGTTTA-TGCAGAG  47

seq1  AGAATCCTGCTGTGATGGGAAGGAAAGGGCTGCCTTGTTTTAGTCTTCCA  100
      ||||||  ||| |||||||||||||||||||||| |||||||||||||| 
seq2  AGAATCTAGCT-TGATGGGAAGGAAAGGGCTGCC-TGTTTTAGTCTTCCC  95

seq1  TGAGAAATAGCAGGAGAAAAGGGAGGAGGATGAGGAAGAGGAGGGGAGGA  150
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGAG-AATAGCAGGAG-AAAGGGAGGAGGATGAGGAAGAGGAGGGGAGGA  143

seq1  GAAGGAGAGCAAAGAGGAGAAGGAAGAAGGAATAAGAAGAAAGAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAGCAAAGAGGAGAAGGAAGAAGGAATAAGAAGAAAGAAGAAAG  193

seq1  AAGAAGGCGGAGGAGGAGGAGAAGGAATAAAGAAAAGAAGGTGA-TGCTT  249
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  AAGAAGGCGGAGGAGGAGGAGAAGGAATAAAGAAAAGAAGGTGATTCCTT  243

seq1  TGCAGATCTGTAATGTGCAGAGCAATTGCAACTTATTAAGGAGCCAGC-A  298
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCAGATCTGTAATGTGCAGAGCAATTGCAACTTATTAAGGAGCCAGCAA  293

seq1  AATCCACAGAGTGAGGTCAGCTTTCCTGG-AATTCTAGTTTCCATGATTC  347
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATCCACAGAGTGAGGTCAGCTTTCCTGGAAATTCTAGTTTCCATGATTC  343

seq1  TCTTAACAGGCTTTGATTTC-TTTCTCCTGCCTCGATCCTAGATGGGTTT  396
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTAACAGGCTTTGATTTCTTTTCTCCTGCCTCGATCCTAGATGGGTTT  393

seq1  TACAAAGCTGTCTGATACCAAAGAATTAAAATTTCTCAATATGCTAGCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCTGTCTGATACCAAAGAATTAAAATTTCTCAATATGCTAGCAT  443

seq1  ATGGAAAAGAGTATTAGTTTACGCCAGTACACCAACATGAATCTCACTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAGAGTATTAGTTTACGCCAGTACACCAACATGAATCTCACTTT  493

seq1  GTTTGTTCTAACTTTGTTCTAGTCTTCCCTATTGAATCATTATAAAACAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCTAACTTTGTTCTAGTCTTCCCTATTGAATCATTATAAAACAA  543

seq1  TTAATCTTGCATTTATTCAGCAAAATCCTTCTTTGTAAAATGCTATGTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTGCATTTATTCAGCAAAATCCTTCTTTGTAAAATGCTATGTGC  593

seq1  AAGAGTGGCACAGAAATAGTAACCAGATATGGTGTTTGTATTGTTATTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGCACAGAAATAGTAACCAGATATGGTGTTTGTATTGTTATTCA  643

seq1  TGTATTTGTTGTTTTAAGAAAGGTGGTGGTTTTTCCCATAGAGGTACTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTTGTTTTAAGAAAGGTGGTGGTTTTTCCCATAGAGGTACTTA  693

seq1  GCATTTTAACACCCCCATCTCTGCTTGCCTTCCTGATATAAGCAAAGGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAACACCCCCATCTCTGCTTGCCTTCCTGATATAAGCAAAGGGT  743

seq1  ACACACACACACACACACACACACACACACACACACAAATATATATATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAAATATATATATAT  793

seq1  GGCAGAGGTGAAGATCCAGTGATTTTCTGCATTGATACCTTGTAGGAATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTGAAGATCCAGTGATTTTCTGCATTGATACCTTGTAGGAATA  843

seq1  TCATTGTCTACTTAGTGAGACTTTACTGTCCAATAGCAGAACCTCAAGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCTACTTAGTGAGACTTTACTGTCCAATAGCAGAACCTCAAGAA  893

seq1  TTC  899
      |||
seq2  TTC  896