BAC Information

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BAC

Clone NameB6Ng01-136O11
Chromosome3 (Build37)
Map Location 6,842,946 - 6,843,637
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136O11.bB6Ng01-136O11.g
ACCDH936555DH936556
length1,1421,229
definitionDH936555|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O11, 5' end.DH936556|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaagaatgttacttatttagtaacattcagaattacctctaa
cattgtgggagagacagtaaaagaaatcaggcattacaatttacttgaat
agagctagaaatctcagggcaagcttagcagagcatacttagaatcttca
ttacagtcaggtatggcagaatatattgcatattagaagaaagttggtga
gttcttctgacaaatggagattccctacagattcttaaagagcaaccaag
ttactcccataagcaaggatttgccatggcctagaaagaaggagggctgt
ggtttaaggaagaactacagtattgcacttttcatgaaaaggtctgctgg
agcagaaccccctggtgcaagctttcacaagtctcaaaggaatagcataa
attgtgactagggtgtgaaatcccctcctggcccctgtcattagctgact
ctaggcagggctgtttttatcttaaatgtaaacattgcctggttcctgcc
agtcctttgaaggcattcctctgttttgtgtcagataacttcaatgtacc
ttgcctgctgtgacactctacttctttgttttcttctgtattatataaat
ctgatgctaactttgacaaaattacattcagataccacactcccttgtgt
ccatgtctgtttgtcaccctttcttctctgactcctgtccacctgtatcg
gaaccctgatttctcctgtggattgaggggtaccgactgagtccggtccg
gggcatttctgaactttggctggctggttcaactcagctgtactggctca
aactccttttcagctgactgactcaatctaacttctctcagcttctcact
gaattgcttttttgacctcaaactagctccagcagtttgtactaatcttc
tgcttccttttattctttcacttcaactgattctggtgacctgcagtaac
tcacaaaggattaaactcaattgtactgcaactatttgcattgactctca
ctcaccctctgcagtctcaattagatgtactttcaacataactgaattct
tctacaaacaatcttacctcatggttaaagataaacgtgtgccgcatgct
gaatcccacagacctaggaatttagatgtgactcttgccaga
gaattcaataactcacttaaagagatacaggagaacactgctaaagagtt
acaagtccttagagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcaa
cgctggagatagaaaccctaggaaagaaatctggaaccatagatgccagc
atcagcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
ctccatagagaacatcggcacaacaatcaaagaaaatggaaaatgcaaaa
agatcctaactaaaaacatccaggacacaatgagaagaccaaacctacag
ataataggagtggatgagaatgaagattttcaactcaaaggaccagcaaa
catcttcaacaaaattatagaagaaaacttcccaaatctaaagaaagaga
tgcccatgaacatacaagaagcctacagaactccaaatagactggaccag
aaaagaaattcctcccgacacataataatcagaacatcaaatgcactaaa
taaagatagaatactaaaagcagtaagggaaaaaggtcaagtaacatata
aaggcaagcctatcagaattacaccagatttttcaccagagactatgaaa
gcaagaagagcctggacagatgttatacagacactaagagaacacaaatg
ccagcccaggctactatacccagccaaactctcaattaccatagatggag
aaacgaaagtattccacgacaaaactaaattcacccattatccctccacg
aatccagcccttcaaaggataataacagaaaaaaaccaatacaagacggg
aaccacgccctagaaaaaacaagaagatatccctcaacaaacctaaaaga
agacagccacaggaacagaatgccacttacacaaaattaacaggaagcca
catacttcttaatatctctaatatcaatggactcaattcccataaaggac
tagactaacgaactggctaacgaacgaacgaacattctgtctgctacgga
tcattaagaaagaatcatagacacctacctcgagtgagacagattggtta
aacaaatttctcaggccaaatggttccgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6842946_6843637
seq2: B6Ng01-136O11.b_515_1190

seq1  TTATCTTAAATGTAAACATTGCCTGGTTCCTGCCAGTCCTTTGAAGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTAAATGTAAACATTGCCTGGTTCCTGCCAGTCCTTTGAAGGCAT  50

seq1  TCCTCTGTTTTGTGTCAGATAACTTCAATGTACCTTGCCTGCTGTGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTTTTGTGTCAGATAACTTCAATGTACCTTGCCTGCTGTGACAC  100

seq1  TCTACTTCTTTGTTTTCTTCTGTATTATATAAATCTGATGCTAACTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCTTTGTTTTCTTCTGTATTATATAAATCTGATGCTAACTTTGA  150

seq1  CAAAATTACATTCAGATACCACACTCCCTTGTGTCCATGTCTGTTTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTACATTCAGATACCACACTCCCTTGTGTCCATGTCTGTTTGTCA  200

seq1  CCCTTTCTTCTCTGACTCCTGTCCACCTGTATCGGAACCCTGATTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTTCTCTGACTCCTGTCCACCTGTATCGGAACCCTGATTTCTCC  250

seq1  TGTGGATTGAGGGGTACCGACTGAGTCCGGTCCGGGGCATTTCTGAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTGAGGGGTACCGACTGAGTCCGGTCCGGGGCATTTCTGAACTT  300

seq1  TGGCTGGCTGGTTCAACTCAGCTGTACTGGCTCAAACTCCTTTTCAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGCTGGCTGGTTCAACTCAGCTGTACTGGCTCAAACTCCTTTTC-AGCT  349

seq1  GACTGACTCAATCTAACTTCTCTCAGCTTCTCACTGAATTGCTTTTCTTG  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GACTGACTCAATCTAACTTCTCTCAGCTTCTCACTGAATTGCTTTT-TTG  398

seq1  ACCTCAAACTAGCTCCAGCAGTTTGTACTAATCTTCTGCTTCCTTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCTCAAACTAGCTCCAGCAGTTTGTACTAATCTTCTGCTTCC-TTTTAT  447

seq1  TCTTTCACTTCAACTGATTCTGGTGACCTGCAGTAACTCACAAAGGAATT  500
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTTTCACTTCAACTGATTCTGGTGACCTGCAGTAACTCACAAAGG-ATT  496

seq1  AAACTCAATTGTACTGCAACTATTTGCATTGACTCTCAACTCACCCTCTG  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAACTCAATTGTACTGCAACTATTTGCATTGACTCTC-ACTCACCCTCTG  545

seq1  CAGTTCTCCAATTAGATGTCACTTTCAAACATAACTGAATTCTTCTACAA  600
      ||| ||| ||||||||||| |||||| |||||||||||||||||||||||
seq2  CAG-TCT-CAATTAGATGT-ACTTTC-AACATAACTGAATTCTTCTACAA  591

seq1  ACCAATCTTACCTTCATTGTTAAAGATTAAACGTGTGCAGCATGCCTGAA  650
      | |||||||||| |||| |||||||| ||||||||||| ||||| |||||
seq2  A-CAATCTTACC-TCATGGTTAAAGA-TAAACGTGTGCCGCATG-CTGAA  637

seq1  TCCCAGCAGACCTAGGTATTTTAGATGTGACCCCTTGCCAGA  692
      ||||| |||||||||| | ||||||||||| | |||||||||
seq2  TCCCA-CAGACCTAGG-AATTTAGATGTGA-CTCTTGCCAGA  676