BAC Information

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BAC

Clone NameB6Ng01-137A23
Chromosome3 (Build37)
Map Location 5,275,400 - 5,407,899
singlet/doubletdoublet
Overlap geneZfhx4
Upstream geneLOC620283
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137A23.bB6Ng01-137A23.g
ACCDH936673DH936674
length1,0721,088
definitionDH936673|Mus musculus domesticus DNA, BAC clone: B6Ng01-137A23, 5' end.DH936674|Mus musculus domesticus DNA, BAC clone: B6Ng01-137A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,406,841 - 5,407,899)(5,275,400 - 5,276,489)
sequence
gaattcttttggggaaatgtgaaatctattgcctaagcatcaaatgcaag
ttttgagttcctaatatttttcaggatattatataaatacttatataaca
ttttactgttcttccctcactttgcaaaccatcacaataggaaaacacta
caaaaatgtgaaaaaaaaccctaacactaacaacaatttactttaaaact
gaacaacgcatatactgaactaggactgggagtactcagtcagtgctgcc
cttgcaagcccttctacgttctactaagttttagtctacaaataattaga
agatatcttggaagtaaaggaaattcaataattattggaagttggcaaca
tccttccacaaaaagtaaaggaaaattagtgtctaaattgaaaccttaga
gattggtgaacagaactcagcacatatttgcaagtaaccaaatttgggat
acagccattgacaaaggcatgcatttatcaaatggctcatatttcctaga
gtgtgttttagcatttctttcagctcaaaagcttcaaacccatctttaaa
gggatgtaaaatgactttcgttttccataactaaaacttgatagcctggg
tctaagacaaaatgtcataatttcatggtacagcaatatagttaacaaag
tataacacgagcccatcacttataagaaatagagacataactactcatct
attgatgggcatataagttgattcagtaacgaggctacgatgtctggttg
gtagaaatctagaagtggtatacataggtcacagagtaagtctatgttta
gtgttttgatagtcttccagattgatttctatcttttatgcactcattta
gattcctgctagcagtgtgtgtttgtataaagatgctcctctctagtgat
ttttaccagcgatgatggggatattgtttatgattgccattctggttgag
ggaagatggagttcatggtacctttgatttgaagatgtacaaatagagaa
ctgtagatatatgcacatgggtttttttgtttgtttggtttttttgttat
gtggtttgtgttttttttgttt

gaattccctttgcttagagtgtgctttccccttctggtttgaatttcagt
gtgtggacaagaatgtcttctaaagaaaacatttattagactgaaatatt
aaacttatagaaaaatctgggccatattcccttaaacaaataaacaggaa
agctatgttaagcaagcagatcaaaagagaaatatagtgtgaataagaga
aacaaagaacctctgtatgcctccggcttttgtagagagagagggtaggg
ctcagacagttgccttggcctgcttttggtttcttcatccatgtattttc
cagctcattagacaaaggtttgcatgattgtaggatatataattcaaata
tctaccatgtagaattaatttttcttttgagatgtttaggatgaattaat
ttttttcaaggtttgtttacttttgctttttgtgctttgctttttgcctt
tgttgatttggcctttctttctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttcttttgtt
ttttgagacagggtttctctgtatagccctggctgtcctggaactcactc
tgtagaccaggctggcctcaaactcagaaatccgcctgcctctgcctccc
aagtgctgggattaaagacgtgcgccaccactgcccagctggtttggttt
ttcaaaacagggtttctctgtgtacagccctggctatcctagaactcatt
tcctggaccaggctggccttcaaactcagagatctgcctgcctctgcctc
tcaagtactgggtctaaaggcatgtgctagcatactcagtgaattaatag
tttcttattaagaattcagttaattttacattacaagttgtccttcagtt
tttcaaaaatgggaagggattaaacaattaactaattttcaagggatact
gtgaacttctctcaggcattcgaacccaacataaagtcatcacagaagga
aagggacatgggataccagggctatacacaaaatatttaagctaaacatc
ccccactcttgaatttattattatataacctgtatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5406841_5407899
seq2: B6Ng01-137A23.b_49_1120 (reverse)

seq1  AAACAAAAAAAA---AAACC----------AAAACAAAACA---AAAAAA  34
      ||||||||||||   |||||          ||||| |||||   ||||||
seq2  AAACAAAAAAAACACAAACCACATAACAAAAAAACCAAACAAACAAAAAA  50

seq1  ACCCATGTGCATATATCCTACAGTTTCTCTATTTGTACATCTTTCAAATC  84
      |||||||||||||||| |||||| ||||||||||||||||| ||||||||
seq2  ACCCATGTGCATATAT-CTACAG-TTCTCTATTTGTACATC-TTCAAATC  97

seq1  AAAGGTACCCTGAACTCCATCTTCCCTCAACCAGAATGGCAATCATAAAC  134
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACCATGAACTCCATCTTCCCTCAACCAGAATGGCAATCATAAAC  147

seq1  AATATCCCCATCATCGCTGGTAAAAATCACTAGAGAGGAGCATCTTTATA  184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCCATCATCGCTGGTAAAAATCACTAGAGAGGAGCATCTTTATA  197

seq1  CAAACACACACTGCTAGCAGGAATCTAAATGAGTGCATAAAAGATAGAAA  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACACTGCTAGCAGGAATCTAAATGAGTGCATAAAAGATAGAAA  247

seq1  TCAATCTGGAAGACTATCAAAACACTAAACATAGACTTACTCTGTGACCT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGGAAGACTATCAAAACACTAAACATAGACTTACTCTGTGACCT  297

seq1  ATGTATACCACTTCTAGATTTCTACCAACCAGACATCGTAGCCTCGTTAC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACCACTTCTAGATTTCTACCAACCAGACATCGTAGCCTCGTTAC  347

seq1  TGAATCAACTTATATGCCCATCAATAGATGAGTAGTTATGTCTCTATTTC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAACTTATATGCCCATCAATAGATGAGTAGTTATGTCTCTATTTC  397

seq1  TTATAAGTGATGGGCTCGTGTTATACTTTGTTAACTATATTGCTGTACCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTGATGGGCTCGTGTTATACTTTGTTAACTATATTGCTGTACCA  447

seq1  TGAAATTATGACATTTTGTCTTAGACCCAGGCTATCAAGTTTTAGTTATG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATGACATTTTGTCTTAGACCCAGGCTATCAAGTTTTAGTTATG  497

seq1  GAAAACGAAAGTCATTTTACATCCCTTTAAAGATGGGTTTGAAGCTTTTG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGAAAGTCATTTTACATCCCTTTAAAGATGGGTTTGAAGCTTTTG  547

seq1  AGCTGAAAGAAATGCTAAAACACACTCTAGGAAATATGAGCCATTTGATA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGAAATGCTAAAACACACTCTAGGAAATATGAGCCATTTGATA  597

seq1  AATGCATGCCTTTGTCAATGGCTGTATCCCAAATTTGGTTACTTGCAAAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGCCTTTGTCAATGGCTGTATCCCAAATTTGGTTACTTGCAAAT  647

seq1  ATGTGCTGAGTTCTGTTCACCAATCTCTAAGGTTTCAATTTAGACACTAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGAGTTCTGTTCACCAATCTCTAAGGTTTCAATTTAGACACTAA  697

seq1  TTTTCCTTTACTTTTTGTGGAAGGATGTTGCCAACTTCCAATAATTATTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTACTTTTTGTGGAAGGATGTTGCCAACTTCCAATAATTATTG  747

seq1  AATTTCCTTTACTTCCAAGATATCTTCTAATTATTTGTAGACTAAAACTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTTACTTCCAAGATATCTTCTAATTATTTGTAGACTAAAACTT  797

seq1  AGTAGAACGTAGAAGGGCTTGCAAGGGCAGCACTGACTGAGTACTCCCAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAACGTAGAAGGGCTTGCAAGGGCAGCACTGACTGAGTACTCCCAG  847

seq1  TCCTAGTTCAGTATATGCGTTGTTCAGTTTTAAAGTAAATTGTTGTTAGT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTTCAGTATATGCGTTGTTCAGTTTTAAAGTAAATTGTTGTTAGT  897

seq1  GTTAGGGTTTTTTTTCACATTTTTGTAGTGTTTTCCTATTGTGATGGTTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGTTTTTTTTCACATTTTTGTAGTGTTTTCCTATTGTGATGGTTT  947

seq1  GCAAAGTGAGGGAAGAACAGTAAAATGTTATATAAGTATTTATATAATAT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGAGGGAAGAACAGTAAAATGTTATATAAGTATTTATATAATAT  997

seq1  CCTGAAAAATATTAGGAACTCAAAACTTGCATTTGATGCTTAGGCAATAG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAATATTAGGAACTCAAAACTTGCATTTGATGCTTAGGCAATAG  1047

seq1  ATTTCACATTTCCCCAAAAGAATTC  1059
      |||||||||||||||||||||||||
seq2  ATTTCACATTTCCCCAAAAGAATTC  1072


seq1: chr3_5275400_5276489
seq2: B6Ng01-137A23.g_66_1153

seq1  GAATTCCCTTTGCTTAGAGTGTGCTTTCCCCTTCTGGTTTGAATTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTGCTTAGAGTGTGCTTTCCCCTTCTGGTTTGAATTTCAGT  50

seq1  GTGTGGACAAGAATGTCTTCTAAAGAAAACATTTATTAGACTGAAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACAAGAATGTCTTCTAAAGAAAACATTTATTAGACTGAAATATT  100

seq1  AAACTTATAGAAAAATCTGGGCCATATTCCCTTAAACAAATAAACAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATAGAAAAATCTGGGCCATATTCCCTTAAACAAATAAACAGGAA  150

seq1  AGCTATGTTAAGCAAGCAGATCAAAAGAGAAATATAGTGTGAATAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTTAAGCAAGCAGATCAAAAGAGAAATATAGTGTGAATAAGAGA  200

seq1  AACAAAGAACCTCTGTATGCCTCCGGCTTTTGTAGAGAGAGAGGGTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAACCTCTGTATGCCTCCGGCTTTTGTAGAGAGAGAGGGTAGGG  250

seq1  CTCAGACAGTTGCCTTGGCCTGCTTTTGGTTTCTTCATCCATGTATTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAGTTGCCTTGGCCTGCTTTTGGTTTCTTCATCCATGTATTTTC  300

seq1  CAGCTCATTAGACAAAGGTTTGCATGATTGTAGGATATATAATTCAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATTAGACAAAGGTTTGCATGATTGTAGGATATATAATTCAAATA  350

seq1  TCTACCATGTAGAATTAATTTTTCTTTTGAGATGTTTAGGATGAATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATGTAGAATTAATTTTTCTTTTGAGATGTTTAGGATGAATTAAT  400

seq1  TTTTTTCAAGGTTTGTTTACTTTTGCTTTTTGTGCTTTGCTTTTTGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAAGGTTTGTTTACTTTTGCTTTTTGTGCTTTGCTTTTTGCCTT  450

seq1  TGTTGATTTGGCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATTTGGCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  500

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTGTT  550

seq1  TTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTC  600

seq1  TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCC  650

seq1  AAGTGCTGGGATTAAAGACGTGCGCCACCACTGCCCAGCTGGTTTGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTAAAGACGTGCGCCACCACTGCCCAGCTGGTTTGGTTT  700

seq1  TTCAAAACAGGGTTTCTCTGTGTACAGCCCTGGCTATCCTAGAACTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACAGGGTTTCTCTGTGTACAGCCCTGGCTATCCTAGAACTCATT  750

seq1  TCCTGGACCAGGCTGGCCTTCAAACTCAGAGATCTGCCTGCCTCTGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACCAGGCTGGCCTTCAAACTCAGAGATCTGCCTGCCTCTGCCTC  800

seq1  TCAAGTACTGGGTCTAAAGGCATGTGCTAGCATACTCAGTGAATTAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACTGGGTCTAAAGGCATGTGCTAGCATACTCAGTGAATTAATAG  850

seq1  TTTCTTATTAAGAATTCAGTTAATTTTACATTACAAGTTGTCCTTCAAGT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTTATTAAGAATTCAGTTAATTTTACATTACAAGTTGTCCTTC-AGT  899

seq1  TTTTCAAAAATGGGAAGGATTAAAACAATTAACTAATTTTCAAGGGATAC  950
      ||||||||||||||||||  | ||||||||||||||||||||||||||||
seq2  TTTTCAAAAATGGGAAGGGATTAAACAATTAACTAATTTTCAAGGGATAC  949

seq1  TGTGAACTTCTTCTCAGGCATTCGAACCCAACATAAAGTCATCACAG-AT  999
      |||||||||| |||||||||||||||||||||||||||||||||||| | 
seq2  TGTGAACTTC-TCTCAGGCATTCGAACCCAACATAAAGTCATCACAGAAG  998

seq1  GAAAGGGACATGGGATACCA-GGCTATACACAAAAATATTTAAGCTAAAC  1048
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  GAAAGGGACATGGGATACCAGGGCTATACAC-AAAATATTTAAGCTAAAC  1047

seq1  ATCCCCCACTCTGAATTTTATTATTTATATAA-CTGTAATGCA  1090
      ||||||||||||  | ||||||| |||||||| |||| |||||
seq2  ATCCCCCACTCTTGAATTTATTA-TTATATAACCTGT-ATGCA  1088


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