BAC Information

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BAC

Clone NameB6Ng01-137D01
Chromosome3 (Build37)1 (Build37)
Map Location 41,059,131 - 41,059,737186,105,993 - 186,106,919
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137D01.bB6Ng01-137D01.g
ACCDH936771DH936772
length905929
definitionDH936771|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D01, 5' end.DH936772|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,131 - 41,059,737)(186,105,993 - 186,106,919)
sequence
gaattctttgttcagttctgagccccattttttaatggagttatttgatt
ttctggggtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacgtgtcttttgccttacagaagctttgcagttttat
gaggtcccatttgtcaattctcgatcttacaacacaagccattgctgttc
tattcaggaatttttcccctgtgccaatatcttcgaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataggagtggatcaatttaca
ttcttctacatgataaccaccaattgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ccacttgtctgtcactataccagtaccatgccatttttatcacaattgct
ctgtagtacagttttaggtcaggcatgatgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcagattgccctttctaattcttgcagattgctctttctttctttc
tttcttcctttcttctttctttctttctttcttctttcttctttctttct
ttcttttttttttttttttgggtttttcgagacagggttttctctgtata
gccctggctgtcctggaactcacttttgtagaccaggctgggcctcgaac
tcaga
gaattctctttctttctctcctttcactgtataggttgctagatggaaat
atcacagagatatgagcccactatatgaagcaaaaaaattgagatcagag
attctgatctggatattcccttacaatcagagtatttcaaaaaataccca
gtttaggacagttttcaagttatttatgtctttggagcaagaatatcaaa
ataggagatgtatttgaacttaagactaccttaataacaaatacgtagaa
gtagcattatacagattgagcaagtcatttttatatatttgggaataaaa
tatttatctacatacacacaaatttatgtaacaacagttaatgataaatg
gggcataaatttgaaaaagaacaagggaggtatttgagagggtttgaagg
gaaggagaatatgatgcaatcatattataataccaaaaataaaagaataa
atagaaatttctaccttgaaaatcaatttaactatatttaaataaaccca
catttactttcaaatagaaaaaaatgcccccttcttcctcttcttcttaa
ttatttttcttctctatcctataactcaaacttaaaatctaagatgatca
ttgacttagtcttccttatatgatgctgatcgtcccaccaagggtttcct
gtggtgatgaaggtcagttttactgtgactccatgcctgatggtcttctg
ttaatgttctaggtttcaaactctaaggaatttaggaatacacagtccag
gaccttcgtgagtagtggtattcatacactgagggaggagacacttggag
gaccagggatggtggggacagaggtcatgtgggatgtccactggaggatg
ggactcataccacagggtaaaggatttcacccaggtagcaagctcacgga
ttagaatgatattaaggttacagaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059131_41059737
seq2: B6Ng01-137D01.b_47_653 (reverse)

seq1  TACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAG  50
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TACTACAGAGCAATTGTGATAAAAATGGCATGGTACTGGTATAGTGACAG  50

seq1  ACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACA  100
      |||||  |||||||||||||||||||||||| |||||| ||| |||||||
seq2  ACAAGTGGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACA  100

seq1  CCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAA  150

seq1  AAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATG  200
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  AAAGACAGCATTTTCAACAAATGGTGCTGGCACAATTGGTGGTTATCATG  200

seq1  TAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAAT  250
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAATGTAAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAAT  250

seq1  CTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATA  300
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATA  300

seq1  GAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATT  350
      ||||||||||||||||||||||| |||||||| | |||||||||||||||
seq2  GAGGAGAAAGTGGGGAAAAGCCTCGAAGATATTGGCACAGGGGAAAAATT  350

seq1  CCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAAT  400
      |||| ||||||||||||||||||||| |||||||| |||||| |||||||
seq2  CCTGAATAGAACAGCAATGGCTTGTGTTGTAAGATCGAGAATTGACAAAT  400

seq1  GGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAAT  450
      |||||||||| ||||||||||||||||| ||||||||||||| |||||||
seq2  GGGACCTCATAAAACTGCAAAGCTTCTGTAAGGCAAAAGACA-CGTCAAT  449

seq1  AAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAA  499
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAA  499

seq1  ATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGG  549
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGG  549

seq1  ATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAAC  599
      |  ||||||||||||||||| |||||||||||||||||||||| || |||
seq2  ACCCCAGAAAATCAAATAACTCCATTAAAAAATGGGGCTCAGAACTGAAC  599

seq1  AAAGAATT  607
      ||||||||
seq2  AAAGAATT  607

seq1: chr1_186105993_186106919
seq2: B6Ng01-137D01.g_69_997

seq1  GAATTCTCTTTCTTTCTCTCCTTTCACTGTATAGGTTGCTAGATGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTTTCTCTCCTTTCACTGTATAGGTTGCTAGATGGAAAT  50

seq1  ATCACAGAGATATGAGCCCACTATATGAAGCAAAAAAATTGAGATCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAGATATGAGCCCACTATATGAAGCAAAAAAATTGAGATCAGAG  100

seq1  ATTCTGATCTGGATATTCCCTTACAATCAGAGTATTTCAAAAAATACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATCTGGATATTCCCTTACAATCAGAGTATTTCAAAAAATACCCA  150

seq1  GTTTAGGACAGTTTTCAAGTTATTTATGTCTTTGGAGCAAGAATATCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGACAGTTTTCAAGTTATTTATGTCTTTGGAGCAAGAATATCAAA  200

seq1  ATAGGAGATGTATTTGAACTTAAGACTACCTTAATAACAAATACGTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGATGTATTTGAACTTAAGACTACCTTAATAACAAATACGTAGAA  250

seq1  GTAGCATTATACAGATTGAGCAAGTCATTTTTATATATTTGGGAATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTATACAGATTGAGCAAGTCATTTTTATATATTTGGGAATAAAA  300

seq1  TATTTATCTACATACACACAAATTTATGTAACAACAGTTAATGATAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTACATACACACAAATTTATGTAACAACAGTTAATGATAAATG  350

seq1  GGGCATAAATTTGAAAAAGAACAAGGGAGGTATTTGAGAGGGTTTGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAAATTTGAAAAAGAACAAGGGAGGTATTTGAGAGGGTTTGAAGG  400

seq1  GAAGGAGAATATGATGCAATCATATTATAATACCAAAAATAAAAGAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAATATGATGCAATCATATTATAATACCAAAAATAAAAGAATAA  450

seq1  ATAGAAATTTCTACCTTGAAAATCAATTTAACTATATTTAAATAAACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATTTCTACCTTGAAAATCAATTTAACTATATTTAAATAAACCCA  500

seq1  CATTTACTTTCAAATAGAAAAAAATGCCCCCTTCTTCCTCTTCTTCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTTCAAATAGAAAAAAATGCCCCCTTCTTCCTCTTCTTCTTAA  550

seq1  TTATTTTTCTTCTCTATCCTATAACTCAAACTTAAAATCTAAGATGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTTCTCTATCCTATAACTCAAACTTAAAATCTAAGATGATCA  600

seq1  TTGACTTAGTCTTCCTTATATGATGCTGATCGTCCCACCAAGGGTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAGTCTTCCTTATATGATGCTGATCGTCCCACCAAGGGTTTCCT  650

seq1  GTGGTGATGAAGGTCAGTTTTACTGTGACTCCATGCCTGATGGTCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATGAAGGTCAGTTTTACTGTGACTCCATGCCTGATGGTCTTCTG  700

seq1  TTAATGTTCTAGGTTTCAAACTCTAAGGAATTTAGGAATACACAGTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTCTAGGTTTCAAACTCTAAGGAATTTAGGAATACACAGTCCAG  750

seq1  GACCTTCGTGAGTAGTGGTATTCATACACTGAGGGAGGAGACACTTGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCGTGAGTAGTGGTATTCATACACTGAGGGAGGAGACACTTGGAG  800

seq1  GACCAGGGATGGTGGGGACAGAGGTCATGTGGGATGTCCACTGGAGGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGGATGGTGGGGACAGAGGTCATGTGGGATGTCCACTGGAGGATG  850

seq1  GGACTCAGACCACAGGGTAAAGGATTTCACCCAGGTAGCAAGCTCACGGA  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCATACCACAGGGTAAAGGATTTCACCCAGGTAGCAAGCTCACGGA  900

seq1  -TAGAATGATA-TGATGTTACAGAGGTGG  927
       |||||||||| | | |||||||||||||
seq2  TTAGAATGATATTAAGGTTACAGAGGTGG  929