BAC Information

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BAC

Clone NameB6Ng01-137H20
Chromosome3 (Build37)
Map Location 85,950,145 - 86,109,485
singlet/doubletdoublet
Overlap geneLOC634201, Lrba
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a
Downstream geneMab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137H20.bB6Ng01-137H20.g
ACCDH936995DH936996
length3061,104
definitionDH936995|Mus musculus domesticus DNA, BAC clone: B6Ng01-137H20, 5' end.DH936996|Mus musculus domesticus DNA, BAC clone: B6Ng01-137H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,950,145 - 85,950,450)(86,108,363 - 86,109,485)
sequence
gaattccaagccagtcaggcctatatagtgagaatctgactttattattt
tattgaaaagaattacgctacatattttgtttgtttcttgagttgttttt
gtttgtttatttggttttccgagacagggtttctctgtatagccctggct
attctggaactcactctgtagaccaggctggcctcgaacccacctgcctc
tgcctcccaagtgctgggattaaaggcatgtgccaccactgcccaacata
ttttgatcatgtttttccctctctgaatccctcccagatcttctgcctcc
ctaccc
gaattcatgtgtctctgcctttgctacaactcaaccctctaatacaggat
ataaaatatgtcaacatacaacctaagttttaaagacaaaaatccccttg
cctcccattaaaatttttaaatttcaattatacaaatggatgacaaaaaa
cctaaaatataaaaacttgtatcctcataataaacccctgccaatttaaa
atgttttatacacacacacatatatatatacatatatatatatatacata
tatatatatatatattcatgttctgtttgtcttgatcggtttttcctttt
ttgagatagtgtttctacatagtccttactgtcccagaactcattgtgta
gaccaggctgacctaaactcacagtgatatgcctgcctctgcctaccaag
tattggcattaaaggctgtcactatgagcagccaaaatacatacattttt
aataatgtatatatcaccatgttaactttatttgataacatttattatgt
tttagttgatattttcaactaataaatcagaattacattaacaataatat
aatatgtatagtattgttcataagtttctctaaaatattgttactctaca
acaatgagtggcaaaaaaaactaatcagttcaataatcatgaaaactctc
acgtaaaatgaaaacagaaagcccccaggcatggtggtgtacagctgtaa
tcctggctcagaaaactaaaggaaaaagacggtgaactacatggtgagtt
gcaggctagtggggtaaggaccacacaggaaaacgctctctcaaaaacaa
ccatcaaaacaagaaaccaaaacactcaccagatagtcaagtcaacctca
tcagataatatttgcttgtagtccagctgggcgaagagcggaaacagaac
ttgtacttctcctatggagtgcatggcgctctggatggaatgtgtcaaaa
ctgcctttacatccttgaggaacacaaagcacagcaaagtttcatgtttc
ttttctaaagcattaaactaaaatacaacagaaaataaagacctacgatg
tgcacgccgcatattgagcatttcaaacacgcgatgatcactgacactcc
tgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85950145_85950450
seq2: B6Ng01-137H20.b_43_348

seq1  GAATTCCAAGCCAGTCAGGCCTATATAGTGAGAATCTGACTTTATTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCAGTCAGGCCTATATAGTGAGAATCTGACTTTATTATTT  50

seq1  TATTGAAAAGAATTACGCTACATATTTTGTTTGTTTCTTGAGTTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAAGAATTACGCTACATATTTTGTTTGTTTCTTGAGTTGTTTTT  100

seq1  GTTTGTTTATTTGGTTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTATTTGGTTTTCCGAGACAGGGTTTCTCTGTATAGCCCTGGCT  150

seq1  ATTCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACCCACCTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACCCACCTGCCTC  200

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCCAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACTGCCCAACATA  250

seq1  TTTTGATCATGTTTTTCCCTCTCTGAATCCCTCCCAGATCTTCTGCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCATGTTTTTCCCTCTCTGAATCCCTCCCAGATCTTCTGCCTCC  300

seq1  CTACCC  306
      ||||||
seq2  CTACCC  306

seq1: chr3_86108363_86109485
seq2: B6Ng01-137H20.g_66_1169 (reverse)

seq1  CTCAGGAGTGTCAGTGAATCACTTCGGCGTGTTTGTGAAATGCCCTTAAA  50
      |||||||||||||||| ||||  || |||||||  ||||||||   | ||
seq2  CTCAGGAGTGTCAGTG-ATCA--TC-GCGTGTT--TGAAATGC---TCAA  41

seq1  TATGCGGCGTGCCACATCGTAGTGTTCCTGTATTTTCTGTTGTATTTTAG  100
      ||||||||||| |||||||||| ||  || ||||||||||||||||||||
seq2  TATGCGGCGTG-CACATCGTAG-GT--CTTTATTTTCTGTTGTATTTTAG  87

seq1  TTTTAATTGCTTTAGAAAAGAAACCATTGAAAACTTTGCTGTGCTTTGTG  150
      |||  | |||||||||||||||| |||   ||||||||||||||||||||
seq2  TTT--AATGCTTTAGAAAAGAAA-CAT--GAAACTTTGCTGTGCTTTGTG  132

seq1  TTCCTCAAGGATGTAAAGGCAGTTTTGACACATTCCATCCAGAGCGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAGGATGTAAAGGCAGTTTTGACACATTCCATCCAGAGCGCCAT  182

seq1  GCACTCCATAGGAGGAGTACAAGTTCTGTTTCCGCTCTTCGCCCAGCTGG  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCACTCCATAGGAGAAGTACAAGTTCTGTTTCCGCTCTTCGCCCAGCTGG  232

seq1  ACTACAAGCAATATTTATCTGATGAGGTTGACTTGACTATCTGGTGAGTG  300
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  ACTACAAGCAAATATTATCTGATGAGGTTGACTTGACTATCTGGTGAGTG  282

seq1  TTTTTGGTTTCTTGTTTTGATGGTTGTTTTTGAGAGAGCGTTTTCCTGTG  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTGGTTTCTTGTTTTGATGGTTGTTTTTGAGAGAGCGTTTTCCTGTG  331

seq1  TGGTCCTTACCCCACTAGCCTGCAACTCACCATGTAGTTCACCGTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTTACCCCACTAGCCTGCAACTCACCATGTAGTTCACCGTCTTTT  381

seq1  TCCTTTAGTTTTCTGAGCCAGGATTACAGCTGTACACCACCATGCCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGTTTTCTGAGCCAGGATTACAGCTGTACACCACCATGCCTGGG  431

seq1  GGCTTTCTGTTTTCATTTTACGTGAGAGTTTTCATGATTATTGAACTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTGTTTTCATTTTACGTGAGAGTTTTCATGATTATTGAACTGAT  481

seq1  TAGTTTTTTTTGCCACTCATTGTTGTAGAGTAACAATATTTTAGAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTTTGCCACTCATTGTTGTAGAGTAACAATATTTTAGAGAAAC  531

seq1  TTATGAACAATACTATACATATTATATTATTGTTAATGTAATTCTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACAATACTATACATATTATATTATTGTTAATGTAATTCTGATTT  581

seq1  ATTAGTTGAAAATATCAACTAAAACATAATAAATGTTATCAAATAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTGAAAATATCAACTAAAACATAATAAATGTTATCAAATAAAGTT  631

seq1  AACATGGTGATATATACATTATTAAAAATGTATGTATTTTGGCTGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTGATATATACATTATTAAAAATGTATGTATTTTGGCTGCTCAT  681

seq1  AGTGACAGCCTTTAATGCCAATACTTGGTAGGCAGAGGCAGGCATATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGCCTTTAATGCCAATACTTGGTAGGCAGAGGCAGGCATATCAC  731

seq1  TGTGAGTTTAGGTCAGCCTGGTCTACACAATGAGTTCTGGGACAGTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTAGGTCAGCCTGGTCTACACAATGAGTTCTGGGACAGTAAGG  781

seq1  ACTATGTAGAAACACTATCTCAAAAAAGGAAAAACCGATCAAGACAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAGAAACACTATCTCAAAAAAGGAAAAACCGATCAAGACAAACA  831

seq1  GAACATGAATATATATATATATATATGTATATATATATATATGTATATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGAATATATATATATATATATGTATATATATATATATGTATATAT  881

seq1  ATATGTGTGTGTGTATAAAACATTTTAAATTGGCAGGGGTTTATTATGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGTGTGTATAAAACATTTTAAATTGGCAGGGGTTTATTATGAG  931

seq1  GATACAAGTTTTTATATTTTAGGTTTTTTGTCATCCATTTGTATAATTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAGTTTTTATATTTTAGGTTTTTTGTCATCCATTTGTATAATTGA  981

seq1  AATTTAAAAATTTTAATGGGAGGCAAGGGGATTTTTGTCTTTAAAACTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAATTTTAATGGGAGGCAAGGGGATTTTTGTCTTTAAAACTTA  1031

seq1  GGTTGTATGTTGACATATTTTATATCCTGTATTAGAGGGTTGAGTTGTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTATGTTGACATATTTTATATCCTGTATTAGAGGGTTGAGTTGTAG  1081

seq1  CAAAGGCAGAGACACATGAATTC  1123
      |||||||||||||||||||||||
seq2  CAAAGGCAGAGACACATGAATTC  1104