BAC Information

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BAC

Clone NameB6Ng01-137J23
Chromosome3 (Build37)X (Build37)
Map Location 95,593,550 - 95,594,642137,357,899 - 137,358,087
singlet/doubletsingletsinglet
Overlap gene4930535B03Rik
Upstream genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, LOC100043327
Downstream genePrpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137J23.bB6Ng01-137J23.g
ACCDH937095DH937096
length1,100193
definitionDH937095|Mus musculus domesticus DNA, BAC clone: B6Ng01-137J23, 5' end.DH937096|Mus musculus domesticus DNA, BAC clone: B6Ng01-137J23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,593,550 - 95,594,642)(137,357,899 - 137,358,087)
sequence
gaattccttagttgtgaattctctgtttagttctatactccattttttaa
ttgggttgtttgtttttttggtggttagcttcttgttttaatttctttaa
tggattttttttttctttagtgccaagtgtctacagaatgaggtagtcta
cttggaagagtaccttgaacacaaatttaacctcaaatagttaagggttt
ttcggtgcatttaataaattatccattagttaatttcttattaccccctc
catgtaattagtccatgtaaaagcaattacgtgaggctggagagatgctc
aggttggaagcactggctgcttttcagttcctttctggcctccgtaggca
ctgcatgtgggtgatgtgcatacaagcaggcaaggcacccataagcacaa
agtaacagcatggaggtttttaaaagttagctgtttgaaaacagtatatt
tgggaaaagttaatgacttttttttatctcttctctccagctacatatcc
ccatcgtttgaatctcttttatcttgccaatgatgtcatacagaattgta
aacggaaaaatgcaatcatatttcgtgaatcatttgctgatgtgcttcct
gaagcagctgctctagtgaagtaagtaaatctgtattgtacttggggatt
aattttttaatttttattttcttgtttttgcacttattaacaaaaacata
aattgtgcatatttaaagacccaagtaaaatattgtgttattggacaagt
gtaatggtgtttgtttttaatttcagcatctggggagcggggaaggtgaa
acttttaaatttgagacctcgtttcaaaaaagcaaaaatggggtgagcat
aggaggtagtagctcattcttatctttctctggattcattcatagtttaa
tttttagtgttcttcacttatagatttttttttttaaataatgaaaggag
tctcagcataaaaatataacgaaaagaattagaaaacaccagggttagtg
ttttattaaaagttcagtatagctttgtgttttgtgtataattgtccact
aggtgttctctactacataaatgtcaaagactgtaaaatgcaagcaggaa

agccgggcgtggtggcgcacacctttaatcccagcacttgggaggcagag
gcaggcagatttctgagtttgaggccagcctggtctacaaagtgagttcc
aggacagccagggctacacagagaaaccctgtctcgaaaaaaataaaata
aaacagatgaagaagaaaaaagaagaggaaggaggaggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95593550_95594642
seq2: B6Ng01-137J23.b_48_1147 (reverse)

seq1  TTCCTGCTTGCATTCTACAGTCTGTGACA-TTATGTACGTAGAG-ACACC  48
      |||||||||||||| |||||||| ||||| ||||||| |||||| |||||
seq2  TTCCTGCTTGCATTTTACAGTCTTTGACATTTATGTA-GTAGAGAACACC  49

seq1  TAGT-GACA--TATACACAAAACACAAAGCTATACTGAACTTTT-ATAAA  94
      |||| ||||  ||||||||||||||||||||||||||||||||| |||||
seq2  TAGTGGACAATTATACACAAAACACAAAGCTATACTGAACTTTTAATAAA  99

seq1  ACACTAACCCTGGTGTTTTCTAATTCTTTTCCTTATATTTTTATGCTGAG  144
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACACTAACCCTGGTGTTTTCTAATTCTTTTCGTTATATTTTTATGCTGAG  149

seq1  ACTCC-TTCATTATTT-AAAAAAAAAATCTATAAGTGAAGAACACTAAAA  192
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTCCTTTCATTATTTAAAAAAAAAAATCTATAAGTGAAGAACACTAAAA  199

seq1  ATTAAACTATGAATGAATCCAGAGAAAGATAAGAATGAGCTACTACCTCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTATGAATGAATCCAGAGAAAGATAAGAATGAGCTACTACCTCC  249

seq1  TATGCTCACCCCATTTTTGCTTTTTTGAAACGAGGTCTCAAATTTAAAAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCACCCCATTTTTGCTTTTTTGAAACGAGGTCTCAAATTTAAAAG  299

seq1  TTTCACCTTCCCCGCTCCCCAGATGCTGAAATTAAAAACAAACACCATTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTTCCCCGCTCCCCAGATGCTGAAATTAAAAACAAACACCATTA  349

seq1  CACTTGTCCAATAACACAATATTTTACTTGGGTCTTTAAATATGCACAAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTCCAATAACACAATATTTTACTTGGGTCTTTAAATATGCACAAT  399

seq1  TTATGTTTTTGTTAATAAGTGCAAAAACAAGAAAATAAAAATTAAAAAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTTGTTAATAAGTGCAAAAACAAGAAAATAAAAATTAAAAAAT  449

seq1  TAATCCCCAAGTACAATACAGATTTACTTACTTCACTAGAGCAGCTGCTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCCAAGTACAATACAGATTTACTTACTTCACTAGAGCAGCTGCTT  499

seq1  CAGGAAGCACATCAGCAAATGATTCACGAAATATGATTGCATTTTTCCGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCACATCAGCAAATGATTCACGAAATATGATTGCATTTTTCCGT  549

seq1  TTACAATTCTGTATGACATCATTGGCAAGATAAAAGAGATTCAAACGATG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTCTGTATGACATCATTGGCAAGATAAAAGAGATTCAAACGATG  599

seq1  GGGATATGTAGCTGGAGAGAAGAGATAAAAAAAAGTCATTAACTTTTCCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATGTAGCTGGAGAGAAGAGATAAAAAAAAGTCATTAACTTTTCCC  649

seq1  AAATATACTGTTTTCAAACAGCTAACTTTTAAAAACCTCCATGCTGTTAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACTGTTTTCAAACAGCTAACTTTTAAAAACCTCCATGCTGTTAC  699

seq1  TTTGTGCTTATGGGTGCCTTGCCTGCTTGTATGCACATCACCCACATGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTTATGGGTGCCTTGCCTGCTTGTATGCACATCACCCACATGCA  749

seq1  GTGCCTACGGAGGCCAGAAAGGAACTGAAAAGCAGCCAGTGCTTCCAACC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTACGGAGGCCAGAAAGGAACTGAAAAGCAGCCAGTGCTTCCAACC  799

seq1  TGAGCATCTCTCCAGCCTCACGTAATTGCTTTTACATGGACTAATTACAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATCTCTCCAGCCTCACGTAATTGCTTTTACATGGACTAATTACAT  849

seq1  GGAGGGGGTAATAAGAAATTAACTAATGGATAATTTATTAAATGCACCGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGTAATAAGAAATTAACTAATGGATAATTTATTAAATGCACCGA  899

seq1  AAAACCCTTAACTATTTGAGGTTAAATTTGTGTTCAAGGTACTCTTCCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTTAACTATTTGAGGTTAAATTTGTGTTCAAGGTACTCTTCCAA  949

seq1  GTAGACTACCTCATTCTGTAGACACTTGGCACTAAAGAAAAAAAAAATCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTACCTCATTCTGTAGACACTTGGCACTAAAGAAAAAAAAAATCC  999

seq1  ATTAAAGAAATTAAAACAAGAAGCTAACCACCAAAAAAACAAACAACCCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGAAATTAAAACAAGAAGCTAACCACCAAAAAAACAAACAACCCA  1049

seq1  ATTAAAAAATGGAGTATAGAACTAAACAGAGAATTCACAACTAAGGAATT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAATGGAGTATAGAACTAAACAGAGAATTCACAACTAAGGAATT  1099

seq1  C  1093
      |
seq2  C  1100

seq1: chrX_137357899_137358087
seq2: B6Ng01-137J23.g_77_267 (reverse)

seq1  CTCCTCCTCCTCC-TCCTCCTTCTTCTTCTTCTT--TTTTTTTTTTTTTT  47
      ||||||||||||| ||||| |  || ||||||||  | | |||| |||| 
seq2  CTCCTCCTCCTCCTTCCTCTTCTTTTTTCTTCTTCATCTGTTTTATTTTA  50

seq1  TTTTTTTCTGAGACAGGGTTTCTCTGTGTAGTCCTGCCTGTCCTGGAACT  97
      |||||||| |||||||||||||||||||||| |||| |||||||||||||
seq2  TTTTTTTC-GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT  99

seq1  CACTTTGTAGACCAGGCTGGCCTCCAACTCAGAAATCCACCTGCCTCTGC  147
      |||||||||||||||||||||||| ||||||||||||  |||||||||||
seq2  CACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGC  149

seq1  CTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACGACCGG  189
      ||||||||||||||||||||||| ||| ||||||||| ||||
seq2  CTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACGCCCGG  191