BAC Information

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BAC

Clone NameB6Ng01-137O07
Chromosome3 (Build37)
Map Location 88,685,799 - 88,685,981
singlet/doubletsinglet
Overlap gene5830417I10Rik
Upstream genePrcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneMsto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137O07.bB6Ng01-137O07.g
ACCDH937290DH937291
length315408
definitionDH937290|Mus musculus domesticus DNA, BAC clone: B6Ng01-137O07, 5' end.DH937291|Mus musculus domesticus DNA, BAC clone: B6Ng01-137O07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
aaggccagcctggtctacagagtgagttccaggacagccagggctataca
gagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaagag
agagagagagaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaaga
aaagaaaagaaagatgactcttggcggtggttggctactcctttaatctt
agtactttggaggcaaaggccaatatacctttgagtcttaagaatggcca
agagtttacagagaaaccttgtctttttttttttttttgtttttcaagac
ggtttcttttttttg
caaacaaacaaacattaggactgagggtgaagctcaggcacatatttgca
tgcacaagactttgtgtttgatttcccatcgtgtcaaaaaaaaatttttt
ttaacttcctagaagcccaaaatgttaaaaaaaaaatgaagaagaagaag
aaagaggaggaggagaaggagaaggagaaggagaaggagaggaagaggaa
gaggaagaggaagaggaagaggaagaggaagaagaagaagatgatgaaga
agatgaataagattattaagaagattaagaagattatgaagaagattaat
acgacgactacgacgacgacgacgacgacgactcagatcttctggaagaa
caggcaatgttcctgattgcagagccaactctcctgtccggtggtttgcc
tgtccggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88685799_88685981
seq2: B6Ng01-137O07.b_55_368 (reverse)

seq1  CAAAAAAAACCA--CAAAATTAAAAACAAAAAAAAAAAACCCAAAAAACA  48
      |||||||||  |  |    | |||||||||||||||||    |||| |||
seq2  CAAAAAAAAGAAACCGTCTTGAAAAACAAAAAAAAAAA----AAAAGACA  46

seq1  ------------AAA------GGCATCCGT----------GG-----TGG  65
                  |||      | ||| | |          ||     |||
seq2  AGGTTTCTCTGTAAACTCTTGGCCATTCTTAAGACTCAAAGGTATATTGG  96

seq1  ----TG-CACCA---CTCGAAGTTTA---------------ACCCCCAA-  91
          || | |||     | ||| |||               ||| |||| 
seq2  CCTTTGCCTCCAAAGTACTAAGATTAAAGGAGTAGCCAACCACCGCCAAG  146

seq1  --------------------------------------------------  91
                                                        
seq2  AGTCATCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT  196

seq1  ------------------------TTTTTTTTTTTTTTTTTTTTTT--TT  115
                              ||||||||||||||||||||||  ||
seq2  CTTTTCTTTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTGGTT  246

seq1  TTACGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTCACTT  165
      || ||||||||||||||||||| |||||||||||||||||||| ||||| 
seq2  TTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTC  296

seq1  TGTAGACCAGGCTGGCCT  183
      ||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCT  314