BAC Information

Click to search

BAC

Clone NameB6Ng01-137P07
Chromosome3 (Build37)
Map Location 83,740,834 - 83,742,007
singlet/doubletsinglet
Overlap geneD930015E06Rik
Upstream geneFgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
Downstream geneMnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137P07.bB6Ng01-137P07.g
ACCDH937338DH937339
length1,2841,137
definitionDH937338|Mus musculus domesticus DNA, BAC clone: B6Ng01-137P07, 5' end.DH937339|Mus musculus domesticus DNA, BAC clone: B6Ng01-137P07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacatctcgatctgcaggcaacagttaggagactgtgtgccaca
ctgggcatagcctgagtatataagaggcctcaaagcctacccccacggtg
acacacttcttccagtaaggccacacccacaccaacaacgcttccccttc
taaaagtgctattccctatgggccaagcattcaaacacacgagtctgtgg
ggaccatacctatttaaaccaccacaatataatgaatacacattgtttta
ttttgtttttttagtttctctgtgtagtcctgtctgtactctgtagacca
ggctagccttgaacttagagatccgccttcctctgtcctcccagtgctga
gactaaaggtgtggaccaccgataggtttttaagaatacaatatattctg
attatggttccctcccaactccttccagaatctttcctacttccccaccc
accaaaatccacaccctttctttttctctctcattaggacacatagagac
atctaagaaaataatgataaaataaaaacaaaccagaagaagacaaaaca
aacagaagaaaaagccaaagaaaaatttcaaacacatagtcatagagaca
catttgcacacacagaaatctcataaaacacaaccagaaatcaaaatatg
taatgttttttaaaaaaatattgtctaagaatttaatattttagtttata
gaatgagtgattgcccaagcttttaaatatagatgagctgttatcttgct
aaagttttgctacactttacatcttatttaacaaattacatcataataaa
ctcaggtggtagattctttgttctgtgctaggaatcaaaaggcatcttag
tgcatgaagtggatggagttcactgcaaaaatcttgttagcttctataat
gcattcttataaaaacagtggtatttttgttagcactatttgattcttta
aggaaatatatatatatgcacatatatacgtgtgtgtgtgtgtgtgtgta
tacatactattaacaagactcaaagactatacagttcagtgcctttcttt
ccagtagattaagcactgtttgttccacttgagtagtattatttactcag
aaagaaaattgaatctaattatatttatttatacagaaacagtccatggc
aatggttattaagaagctccatcatgattgacttcagggttgcagattga
tactcgatacccgaaagatctcactctatcctccacaatctctgaagcgt
aggttcctggtacgtcgacagacccctgcgcgtg
gaattccctcataaccttttaggcttcagactgaacaactaagaaccact
taaatcaatttaaaacacctaataaactgatttaaactgaagtcccaata
aacatgtactacaagttcacctgtactttctatggtaagcaaatgctatt
ttccagctttggggacaggagacaggagcctctgcctggagacagacagg
agcctctgcctggagacagacaggagcctctgcctggcaacgcaggcccc
tgggcttgctcctcagcagcacagaggaaggaaactgatcaatcttctga
tgatgacgtattttattaaataatcactacttcctgagaaaaataacctc
tctaaatcaagatttcacatctaagcaagtctaccacgtaagactggctt
ggtagtatcttacatttcttagatagtcttaaagaagaacttagcacagg
ggacacaaggcaactctgactgctaaatggcactacagtacatggcattg
ggcacaataccttggttggggccgagaaaatctgcagaggtattgcaaaa
atggcacctgtgtttgtagtcagaaatacattggtgaacaggtttaagac
aatgcctttaacagcaagcttcagagaaaatatattccaacagcctgggg
gtagaaataaagggcctcggaaactcagaacctgcaaagaaaagaagcag
gagaagttgcttcctcgcactcgctatgactaaactcatgatagtagaat
ggtaaatttgctctatggtttagaaattagaagttccatttgttacagat
caaatatttatgattttaaacaaagtttacttttcaatagatagtatttt
aaatctcacagcagaaatcttaagtacttttgtcaagccacatatcttaa
tcataaacactgcttattctgagagaggaagtacagatagccacactgaa
ctaaaagcaactataaaatgtaaaacaaactatatttgctttaaatttaa
aaccagaataggtgtatagatactggttcatagcatgatattaacaagct
taactaggctagtgagaaaggcctgtgctactttaaatgtgtgcttggtc
ctgaacaaacatttatacaggcctgtcaatggctgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83740834_83742007
seq2: B6Ng01-137P07.g_71_1207

seq1  GAATTCCCTCATAACCTTTTAGGCTTCAGACTGAACAACTAAGAACCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCATAACCTTTTAGGCTTCAGACTGAACAACTAAGAACCACT  50

seq1  TAAATCAATTTAAAACACCTAATAAACTGATTTAAACTGAAGTCCCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAATTTAAAACACCTAATAAACTGATTTAAACTGAAGTCCCAATA  100

seq1  AACATGTACTACAAGTTCACCTGTACTTTCTATGGTAAGCAAATGCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTACTACAAGTTCACCTGTACTTTCTATGGTAAGCAAATGCTATT  150

seq1  TTCCAGCTTTGGGGACAGGAGACAGGAGCCTCTGCCTGGAGACAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTTTGGGGACAGGAGACAGGAGCCTCTGCCTGGAGACAGACAGG  200

seq1  AGCCTCTGCCTGGAGACAGACAGGAGCCTCTGCCTGGCAACGCAGGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGCCTGGAGACAGACAGGAGCCTCTGCCTGGCAACGCAGGCCCC  250

seq1  TGGGCTTGCTCCTCAGCAGCACAGAGGAAGGAAACTGATCAATCTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGCTCCTCAGCAGCACAGAGGAAGGAAACTGATCAATCTTCTGA  300

seq1  TGATGACGTATTTTATTAAATAATCACTACTTCCTGAGAAAAATAACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACGTATTTTATTAAATAATCACTACTTCCTGAGAAAAATAACCTC  350

seq1  TCTAAATCAAGATTTCACATCTAAGCAAGTCTACCACGTAAGACTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCAAGATTTCACATCTAAGCAAGTCTACCACGTAAGACTGGCTT  400

seq1  GGTAGTATCTTACATTTCTTAGATAGTCTTAAAGAAGAACTTAGCACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTATCTTACATTTCTTAGATAGTCTTAAAGAAGAACTTAGCACAGG  450

seq1  GGACACAAGGCAACTCTGACTGCTAAATGGCACTACAGTACATGGCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAAGGCAACTCTGACTGCTAAATGGCACTACAGTACATGGCATTG  500

seq1  GGCACAATACCTTGGTTGGGGCCGAGAAAATCTGCAGAGGTATTGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAATACCTTGGTTGGGGCCGAGAAAATCTGCAGAGGTATTGCAAAA  550

seq1  ATGGCACCTGTGTTTGTAGTCAGAAATACATTGGTGAACAGGTTTAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCTGTGTTTGTAGTCAGAAATACATTGGTGAACAGGTTTAAGAC  600

seq1  AATGCCTTTAACAGCAAGCTTCAGAGAAAATATATTCCAACAGCCTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTTAACAGCAAGCTTCAGAGAAAATATATTCCAACAGCCTGGGG  650

seq1  GTAGAAATAAAGGGCCTCGGAAACTCAGAACCTGCAAAGAAAAGAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATAAAGGGCCTCGGAAACTCAGAACCTGCAAAGAAAAGAAGCAG  700

seq1  GAGAAGTTGCTTCCTCGCACTCGCTATGACTAAACTCATGATAGTAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTGCTTCCTCGCACTCGCTATGACTAAACTCATGATAGTAGAAT  750

seq1  GGTAAATTTGCTCTATGGTTTAGAAATTAGAAGTTCCATTTGTTACAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATTTGCTCTATGGTTTAGAAATTAGAAGTTCCATTTGTTACAGAT  800

seq1  CAAATATTTATGATTTTAAACAAAGTTTACTTTTCAATAGATAGTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTATGATTTTAAACAAAGTTTACTTTTCAATAGATAGTATTTT  850

seq1  AAATCTCACAGCAGAAATCTTAAAGTACTTTTGTCAAGCCACATATCTTA  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAATCTCACAGCAGAAATCTT-AAGTACTTTTGTCAAGCCACATATCTTA  899

seq1  ATCATAAACACTGCTTATTCTGAGAGAAGAAAGTACAGATAGCCACAACT  950
      |||||||||||||||||||||||||| || |||||||||||||||| |||
seq2  ATCATAAACACTGCTTATTCTGAGAG-AGGAAGTACAGATAGCCAC-ACT  947

seq1  GAACTAAAAGCAACTATAAAATGTTAAAAACAAACTATATTTGCTTTAAA  1000
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  GAACTAAAAGCAACTATAAAATGT--AAAACAAACTATATTTGCTTTAAA  995

seq1  ATTTTAAAACCAGAATTAGGTGTTATAGATACTGGTTTCATAGCATGATA  1050
        ||||||||||||| |||||| |||||||||||| ||||||||||||||
seq2  --TTTAAAACCAGAA-TAGGTG-TATAGATACTGG-TTCATAGCATGATA  1040

seq1  TTAAACAAAGCTTAAACTAGGCTAAAGGTTGAAGAAAAGGCACTGTGCAT  1100
      ||||   |||||| ||||||||||     |||   |||||| |||||| |
seq2  TTAA--CAAGCTT-AACTAGGCTA----GTGA--GAAAGGC-CTGTGC-T  1079

seq1  ACCTTTAAAATGTGCTTGGTCTCCTTGGAAACAAACACATCTTTTAATAC  1150
      || || ||  |||||||||  ||||    ||||||||      || ||||
seq2  ACTTTAAATGTGTGCTTGG--TCCT---GAACAAACA------TTTATAC  1118

seq1  AATGCTCTGGTCAAAATGGCTGCG  1174
      |   ||   |||  ||||||||||
seq2  AGGCCT---GTC--AATGGCTGCG  1137