BAC Information

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BAC

Clone NameB6Ng01-137P23
Chromosome3 (Build37)
Map Location 78,616,348 - 78,802,578
singlet/doubletdoublet
Overlap geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137P23.bB6Ng01-137P23.g
ACCDH937370DH937371
length1,1931,098
definitionDH937370|Mus musculus domesticus DNA, BAC clone: B6Ng01-137P23, 5' end.DH937371|Mus musculus domesticus DNA, BAC clone: B6Ng01-137P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,616,348 - 78,617,583)(78,801,473 - 78,802,578)
sequence
gaattccttggggattctagcatgtattgaagatatccagggtcatttaa
ctgagggctgaaggaaatacgatcccttatttctttaaagactactggat
gttcatttgctacagtgtttgacatgacctgcttcccctataagagccag
gctgttcaatggcaagcaacagctacactgactaatggccatctggatgt
ggctagtcaggatataaatgtgtgatcactgcaaattatacaccagggtt
taaagacagagtgtaaaagtaaactgcaaattatctcactgtgactttga
atagtgtgtgagatgacagagttttatgcctaccggggttaaacgtactg
ttagcattagctttatctctttttatgtttgtaatatggctacaggaaga
ttataaactacatactcggcttcattgttgctctgctggacagccctcat
gcaacattcaatgccgtaatctcataggaatatttcagtctatcttcttt
acttctctatcctcaagccccacatgggttctaaatacccttggttcctt
tcgtaagtactcaataaatactgattaaatattaaataaaagagcaaata
aaagtgaacaaacaactcacaggctacccaaaatgtttctccaaccaaat
caaaactgtttctaactatgaagaaataactcgtattttgaggcttaaag
aaatgcaagtactgaaagagatcaatttgtaaagtatagaaattatattt
aatattgaaaatgtcccatgtatcctatcagaccaccatggcctaagact
gatcttcaataacaacataaataatggaaagccaacattcacgtggaaac
tgaataacactcttctcaatgataccttggtcaaggaaggaataaagaaa
gaaattaaagactttttagagtttaatgaaaatgaagccacaacgtaccc
aaacctatgggacacaatgaaagcatttctagaggaaactcatagctctg
agtgcctcatgaagaacggagacagcacatactagcagcttgacaacaca
tctaaagccctagaaaaaagagcaatcactcaagagggtagaacgcaaga
aatatcactcaggtgaattcacaagtgcacagaagaactattcagataca
aacgaggatgtttggaatccaagatagtaaccttagctgactc
gaattccatagtcaaagacaggtggacaagacataaggaagcaggctcat
taatgtatgcaggtcatagctggaagaagagacatctttaatggaatagg
aacataccaagaaaaactaacttttaggaaagtgaccagatgaaggaaaa
gggtcctagaaggactctgagacggggagtttacaggaagggatcctgct
tgcagattttctgtggccattttctcagagtcaataagcagtaccatgaa
gaattaatacttggtcttcaggtgggaaaagaataatggtgggtacctct
tcctcttcctcctacttttcgtcctcttcctcctcctcctccttctcttt
cttttttttattatatttctcacctgctttcaggtaaacagaaagaaggc
acagggctctgcactggattgtctccaggtcaataatcttttatatgagg
gagaagttgttttgtttccttccctagcttataataggtcattattccac
cctgagcaaagcaccaaagttctacacttacctgagatgtggccctggtg
gcaatagacaagtaccttctattgtgtaaatctgggtctgcagagaatac
aagagttacttccacagagcaaacccagccaggcagggaagtttctttat
tgacagaatagttgtacagtgttcttcccagcaggattagaggtcccttt
gcatgaacgatctgttttctacctttaccttttctgaaaggaagtctcac
ctcaccctgtgtatcttgtttctgctctgtcattgcacagggtgcgttgt
gaagtaaagcagagcatctgggcagttttaaatagtgtttagtttattaa
ggacccgattacaaatgtccccaaagaacattatttataacttcttgagc
attgcatttagtcattcggtggagtttcagcttcttctttgaaggaggtt
gcattttctttagggatagaaaatgcaccatggatgtgactgtcagagag
ggagctcttggtagagacaccagttattcgataagtttctgctagctatt
ttaccagatagtactgtggagttctgactcttctataagatcatgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78616348_78617583
seq2: B6Ng01-137P23.b_50_1242

seq1  GAATTCCTTGGGGATTCTAGCATGTATTGAAGATATCCAGGGTCATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGGGATTCTAGCATGTATTGAAGATATCCAGGGTCATTTAA  50

seq1  CTGAGGGCTGAAGGAAATACGATCCCTTATTTCTTTAAAGACTACTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCTGAAGGAAATACGATCCCTTATTTCTTTAAAGACTACTGGAT  100

seq1  GTTCATTTGCTACAGTGTTTGACATGACCTGCTTCCCCTATAAGAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTGCTACAGTGTTTGACATGACCTGCTTCCCCTATAAGAGCCAG  150

seq1  GCTGTTCAATGGCAAGCAACAGCTACACTGACTAATGGCCATCTGGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCAATGGCAAGCAACAGCTACACTGACTAATGGCCATCTGGATGT  200

seq1  GGCTAGTCAGGATATAAATGTGTGATCACTGCAAATTATACACCAGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTCAGGATATAAATGTGTGATCACTGCAAATTATACACCAGGGTT  250

seq1  TAAAGACAGAGTGTAAAAGTAAACTGCAAATTATCTCACTGTGACTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGAGTGTAAAAGTAAACTGCAAATTATCTCACTGTGACTTTGA  300

seq1  ATAGTGTGTGAGATGACAGAGTTTTATGCCTACCGGGGTTAAACGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGTGAGATGACAGAGTTTTATGCCTACCGGGGTTAAACGTACTG  350

seq1  TTAGCATTAGCTTTATCTCTTTTTATGTTTGTAATATGGCTACAGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTAGCTTTATCTCTTTTTATGTTTGTAATATGGCTACAGGAAGA  400

seq1  TTATAAACTACATACTCGGCTTCATTGTTGCTCTGCTGGACAGCCCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACTACATACTCGGCTTCATTGTTGCTCTGCTGGACAGCCCTCAT  450

seq1  GCAACATTCAATGCCGTAATCTCATAGGAATATTTCAGTCTATCTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATTCAATGCCGTAATCTCATAGGAATATTTCAGTCTATCTTCTTT  500

seq1  ACTTCTCTATCCTCAAGCCCCACATGGGTTCTAAATACCCTTGGTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTATCCTCAAGCCCCACATGGGTTCTAAATACCCTTGGTTCCTT  550

seq1  TCGTAAGTACTCAATAAATACTGATTAAATATTAAATAAAAGAGCAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAAGTACTCAATAAATACTGATTAAATATTAAATAAAAGAGCAAATA  600

seq1  AAAGTGAACAAACAACTCACAGGCTACCCAAAATGTTTCTCCAACCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAACAAACAACTCACAGGCTACCCAAAATGTTTCTCCAACCAAAT  650

seq1  CAAAACTGTTTCTAACTATGAAGAAATAACTCGTATTTTGAGGCTTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGTTTCTAACTATGAAGAAATAACTCGTATTTTGAGGCTTAAAG  700

seq1  AAATGCAAGTACTGAAAGAGATCAATTTGTAAAGTATAGAAATTATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAGTACTGAAAGAGATCAATTTGTAAAGTATAGAAATTATATTT  750

seq1  AATATTGAAAATGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAAAATGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACT  800

seq1  GATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAAC  850

seq1  TGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAA  900

seq1  GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCC  950

seq1  AAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTC  1000
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  AAACCTATGGGACACAATGAAAGCATTTCT-AGA-GGAAACTCATAGCTC  998

seq1  TGAGTGCCTCCATGAAGAAACGGGAGACAGCACATACTAGCAGCTTGACA  1050
      ||||||||| |||||||||   ||||||||||||||||||||||||||||
seq2  TGAGTGCCT-CATGAAGAA--CGGAGACAGCACATACTAGCAGCTTGACA  1045

seq1  ACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAG  1100
      |||||||| ||||||||||||||||    |||||  |||| ||||||| |
seq2  ACACATCT-AAAGCCCTAGAAAAAA---GAGCAA--TCACTCAAGAGG-G  1088

seq1  TAGACGGCAAGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA  1150
      ||||  ||||||||| |||  |||||  |||||| |||  |||||| |  
seq2  TAGAACGCAAGAAAT-ATC--ACTCA--GGTGAATTCA--CAAGTGCA--  1129

seq1  CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAG  1200
        |||||||||||||| | |      ||||||||||      | ||||  
seq2  -CAGAAGAACTATTCAGATA------CAAACGAGGA------TGTTTG--  1164

seq1  AAAATCAACAAGATAGATAAACCCTTAGCTAGACTC  1236
        ||||  |||||||| |||  |||||||| |||||
seq2  -GAATC--CAAGATAG-TAA--CCTTAGCT-GACTC  1193

seq1: chr3_78801473_78802578
seq2: B6Ng01-137P23.g_71_1168 (reverse)

seq1  GAACATGATCTTATAGGAGAGTCAGGACTCCACAGTACTTTATTCTGGTT  50
      |||||||||||||||| |||||||| |||||||||||||    |||||| 
seq2  GAACATGATCTTATAGAAGAGTCAGAACTCCACAGTACT---ATCTGGTA  47

seq1  AAATAGCTAGCAGAAACTTATCGAATAACTGGTGGTCTCTACC-AGAGCT  99
      ||||||||||||||||||||||||||||||||| ||||||||| ||||| 
seq2  AAATAGCTAGCAGAAACTTATCGAATAACTGGT-GTCTCTACCAAGAGC-  95

seq1  TCCCTCTCTTGACAGTTCCACATCCAT-GTGCATTTTCTATCCCTAAAGG  148
      |||||||| |||||||  ||||||||| ||||||||||||||||||||| 
seq2  TCCCTCTC-TGACAGT--CACATCCATGGTGCATTTTCTATCCCTAAAGA  142

seq1  AAATGCAACCTCCCTTCAAAGAAGAAGCTGAAACTTCCACCGAATGACTA  198
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  AAATGCAACCT-CCTTCAAAGAAGAAGCTGAAAC-TCCACCGAATGACTA  190

seq1  AATGCAATGCTC-AGAAGTTATAAATAATGTTCTTTGGGGACATTTGTAA  247
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATGCAATGCTCAAGAAGTTATAAATAATGTTCTTTGGGGACATTTGTAA  240

seq1  TCCGGGTCCTTAATAAACTAAACACTATTTAAAACTGCCCAGATGCTCTG  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CGGGTCCTTAATAAACTAAACACTATTTAAAACTGCCCAGATGCTCTG  289

seq1  CTTTACTTCACAACGCACCCTGTGCAATGACAGAGCAGAAACAAGATACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTCACAACGCACCCTGTGCAATGACAGAGCAGAAACAAGATACA  339

seq1  CAGGGTGAGGTGAGACTTCCTTTCAGAAAAGGTAAAGGTAGAAAACAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGAGGTGAGACTTCCTTTCAGAAAAGGTAAAGGTAGAAAACAGAT  389

seq1  CGTTCATGCAAAGGGACCTCTAATCCTGCTGGGAAGAACACTGTACAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCATGCAAAGGGACCTCTAATCCTGCTGGGAAGAACACTGTACAACT  439

seq1  ATTCTGTCAATAAAGAAACTTCCCTGCCTGGCTGGGTTTGCTCTGTGGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCAATAAAGAAACTTCCCTGCCTGGCTGGGTTTGCTCTGTGGAA  489

seq1  GTAACTCTTGTATTCTCTGCAGACCCAGATTTACACAATAGAAGGTACTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCTTGTATTCTCTGCAGACCCAGATTTACACAATAGAAGGTACTT  539

seq1  GTCTATTGCCACCAGGGCCACATCTCAGGTAAGTGTAGAACTTTGGTGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTGCCACCAGGGCCACATCTCAGGTAAGTGTAGAACTTTGGTGCT  589

seq1  TTGCTCAGGGTGGAATAATGACCTATTATAAGCTAGGGAAGGAAACAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGGGTGGAATAATGACCTATTATAAGCTAGGGAAGGAAACAAAA  639

seq1  CAACTTCTCCCTCATATAAAAGATTATTGACCTGGAGACAATCCAGTGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTCCCTCATATAAAAGATTATTGACCTGGAGACAATCCAGTGCA  689

seq1  GAGCCCTGTGCCTTCTTTCTGTTTACCTGAAAGCAGGTGAGAAATATAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGTGCCTTCTTTCTGTTTACCTGAAAGCAGGTGAGAAATATAAT  739

seq1  AAAAAAAAGAAAGAGAAGGAGGAGGAGGAGGAAGAGGACGAAAAGTAGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAGAGAAGGAGGAGGAGGAGGAAGAGGACGAAAAGTAGGA  789

seq1  GGAAGAGGAAGAGGTACCCACCATTATTCTTTTCCCACCTGAAGACCAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAAGAGGTACCCACCATTATTCTTTTCCCACCTGAAGACCAAG  839

seq1  TATTAATTCTTCATGGTACTGCTTATTGACTCTGAGAAAATGGCCACAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTCTTCATGGTACTGCTTATTGACTCTGAGAAAATGGCCACAGA  889

seq1  AAATCTGCAAGCAGGATCCCTTCCTGTAAACTCCCCGTCTCAGAGTCCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCAAGCAGGATCCCTTCCTGTAAACTCCCCGTCTCAGAGTCCTT  939

seq1  CTAGGACCCTTTTCCTTCATCTGGTCACTTTCCTAAAAGTTAGTTTTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACCCTTTTCCTTCATCTGGTCACTTTCCTAAAAGTTAGTTTTTCT  989

seq1  TGGTATGTTCCTATTCCATTAAAGATGTCTCTTCTTCCAGCTATGACCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTTCCTATTCCATTAAAGATGTCTCTTCTTCCAGCTATGACCTG  1039

seq1  CATACATTAATGAGCCTGCTTCCTTATGTCTTGTCCACCTGTCTTTGACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTAATGAGCCTGCTTCCTTATGTCTTGTCCACCTGTCTTTGACT  1089

seq1  ATGGAATTC  1106
      |||||||||
seq2  ATGGAATTC  1098