BAC Information

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BAC

Clone NameB6Ng01-138A09
Chromosome3 (Build37)
Map Location 53,892,952 - 54,041,109
singlet/doubletdoublet
Overlap geneLOC100039937, Trpc4
Upstream geneLhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444
Downstream genePostn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138A09.bB6Ng01-138A09.g
ACCDH937390DH937391
length1,1461,091
definitionDH937390|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A09, 5' end.DH937391|Mus musculus domesticus DNA, BAC clone: B6Ng01-138A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,892,952 - 53,894,111)(54,039,995 - 54,041,109)
sequence
gaattcaacaagtcaagtctagtgtgctccaaagttgttgtgatcctagg
agctcaaatcccatatccatctgtttggaatgggtattaaacattttctc
ctgggcatctgggaaggcagatgtcacaaatgtgactggatatgaattgt
taaggaagaaagggtgtcagtgactacatactgttatttaacaaactaga
aaccagaggactaaaacacttaattgaattatcctgtgtcatgaagcaaa
ttgttcccattcaagaatcaactattcagaaattgttcctcttggtctca
ttgcctggtgtgtgtttttcctgtaaacaaacataaaatattattttcta
aaatataagcttaggaactgacattgtaaggcatatgggaacatttagat
aataaaaggctactaaagccctcattagtatgacctttttatacaagagc
aatggcgattgggagaaaaatcctttccactgtactgtgttcataacctt
gctagaacattgctcatattgcatatggcagaaccaaacacatctaataa
aaccttaatggaatgccagtgtggtgcatgaatgattgagaccatacctg
agaatgaatgggaagttaaagaaagaaaattacatgtgcaaatagggtca
tattatgagaagtggtaagtcagggcttaggtaagcttgctaggcgagca
gggaatagtgacataggcttacatgtgatatagggtcttacatgatctat
acattccataactcagtagttaaatttgacatgactttacttttactact
gcaaaaaccttgcccatgttcattctccatgtttcccaaataagtatcag
aaggccaaccaggtgctttccttcttctgtatgacaagaacagaggccat
caacaagccaacgccgtgaaggatttcaaagagaaggaagggcaatgtga
tctgaggtatgggtggctgtgggggagaatcaaagccatagtgaacgtgg
agtgacatggaaatgacaggagagccgcatggaggtggcagccactgaca
gcttcaccttatactcgaggtgacaggtctctggttcaaccttcaattgt
ttccaaagcaacgacatgtatgacacttctgtcgtgagctttgata
gaattctggtcacttgcttggattgattcaacaaatatgtatgctagaca
ctgtagatgttgtaatgaacaaaacaggaaaaaatatctcagtgtagttg
gccttgtaatggagtgaactgggaggcaaaacaaaaccagcaggtaacat
gttggtgtgttatatatgtaatggggaatgagagctatggaggcactagg
aaggctatggctatcctcagagtgaaactgtgagtcactataaacaatgg
cagggacctcagtgcatgacagaccccagagatgaaacgaagataaacac
agcagatgcagtcagcagctattaagaataaagcagatatttccaaggtg
atgcccatatttgtggtgttggtattttctctcaaggagaaattaccatt
gcaactgattctgtagatggggtagtttaggacggtgggaacatatttat
cttacatattaatgtgaattcattagtaacaaggctcagcatatacagtg
aacagtatccctggagactcaactagaagcagaggaaagtcccattctgt
ccaagatctttgtttgtagtgatatcctgaagaacctccttgtgggtcct
cctggtttcaggagtgtgagttctaaattcctgaaccttgaattagtcag
acgggggcctctatagaagcaagattgtgaaaagaagcattgtaatatta
gagctaagacaggtccctcaggggaggaacctcctatcagccaagaagag
tgagcatctcagggggaataaaagacagataagaaacaaaatatgcctac
actgtgatctgggactttttaattctcttcaaaaaataattattattctt
taaacactctctatgcaccatgttgtggaaccctagaactagaatatgaa
gaccacactttgctcctgaaagtgagtactgaaactctatacaaacaaac
agaaacaaataacaccactatcagccgacaaaaaaaatcccaaccccacc
ttgtaaattataaaatcagttagaaaatgactagaacaatggtttccctc
taatatctgtctatgataatgatatgaaatggctctcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53892952_53894111
seq2: B6Ng01-138A09.b_42_1187

seq1  GAATTCAACAAGTCAAGTCTAGTGTGCTCCAAAGTTGTTGTGATCCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAGTCAAGTCTAGTGTGCTCCAAAGTTGTTGTGATCCTAGG  50

seq1  AGCTCAAATCCCATATCCATCTGTTTGGAATGGGTATTAAACATTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAATCCCATATCCATCTGTTTGGAATGGGTATTAAACATTTTCTC  100

seq1  CTGGGCATCTGGGAAGGCAGATGTCACAAATGTGACTGGATATGAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATCTGGGAAGGCAGATGTCACAAATGTGACTGGATATGAATTGT  150

seq1  TAAGGAAGAAAGGGTGTCAGTGACTACATACTGTTATTTAACAAACTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGAAAGGGTGTCAGTGACTACATACTGTTATTTAACAAACTAGA  200

seq1  AACCAGAGGACTAAAACACTTAATTGAATTATCCTGTGTCATGAAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGGACTAAAACACTTAATTGAATTATCCTGTGTCATGAAGCAAA  250

seq1  TTGTTCCCATTCAAGAATCAACTATTCAGAAATTGTTCCTCTTGGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCATTCAAGAATCAACTATTCAGAAATTGTTCCTCTTGGTCTCA  300

seq1  TTGCCTGGTGTGTGTTTTTCCTGTAAACAAACATAAAATATTATTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGTGTGTGTTTTTCCTGTAAACAAACATAAAATATTATTTTCTA  350

seq1  AAATATAAGCTTAGGAACTGACATTGTAAGGCATATGGGAACATTTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGCTTAGGAACTGACATTGTAAGGCATATGGGAACATTTAGAT  400

seq1  AATAAAAGGCTACTAAAGCCCTCATTAGTATGACCTTTTTATACAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGCTACTAAAGCCCTCATTAGTATGACCTTTTTATACAAGAGC  450

seq1  AATGGCGATTGGGAGAAAAATCCTTTCCACTGTACTGTGTTCATAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGATTGGGAGAAAAATCCTTTCCACTGTACTGTGTTCATAACCTT  500

seq1  GCTAGAACATTGCTCATATTGCATATGGCAGAACCAAACACATCTAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACATTGCTCATATTGCATATGGCAGAACCAAACACATCTAATAA  550

seq1  AACCTTAATGGAATGCCAGTGTGGTGCATGAATGATTGAGACCATACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAATGGAATGCCAGTGTGGTGCATGAATGATTGAGACCATACCTG  600

seq1  AGAATGAATGGGAAGTTAAAGAAAGAAAATTACATGTGCAAATAGGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAATGGGAAGTTAAAGAAAGAAAATTACATGTGCAAATAGGGTCA  650

seq1  TATTATGAGAAGTGGTAAGTCAGGGCTTAGGTAAGCTTGCTAGGCGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGAGAAGTGGTAAGTCAGGGCTTAGGTAAGCTTGCTAGGCGAGCA  700

seq1  GGGAATAGTGACATAGGCTTACATGTGATATAGGGTCTTACATGATCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAGTGACATAGGCTTACATGTGATATAGGGTCTTACATGATCTAT  750

seq1  ACATTCCATAACTCAGTAGTTAAATTTGACATGACTTTACTTTTACTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCATAACTCAGTAGTTAAATTTGACATGACTTTACTTTTACTACT  800

seq1  GCAAAAACCTTGCCCATGTTCATTCTCCATGTTTCCCAAATAAGTATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACCTTGCCCATGTTCATTCTCCATGTTTCCCAAATAAGTATCAG  850

seq1  AAGGCCAACCAGGTGCTTTCCTTCTTCTGTATGAACAAGAACAGAGGCCA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGGCCAACCAGGTGCTTTCCTTCTTCTGTATG-ACAAGAACAGAGGCCA  899

seq1  TCAACAAGCCAACGCCGTGAAGGATTTCAAAGAGAAGGAAGGGCAATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGCCAACGCCGTGAAGGATTTCAAAGAGAAGGAAGGGCAATGTG  949

seq1  ATCTGAGGTATGGGTGGCTGTGGGGGAGAATCAAAGCCATAGTGAACGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGTATGGGTGGCTGTGGGGGAGAATCAAAGCCATAGTGAACGTG  999

seq1  GAGGTGACATGGAAATGACAGGAAGAGCCGCATGGAGGTGGCAGGCACAC  1050
      || ||||||||||||||||||| ||||||||||||||||||||| |||  
seq2  GA-GTGACATGGAAATGACAGG-AGAGCCGCATGGAGGTGGCAGCCAC--  1045

seq1  TTGACAGCTTCACCTTATACTCAGAGGTGACAAGGTCTCTGTTACAACCT  1100
       ||||||||||||||||||||| |||||||| ||||||||| | ||||||
seq2  -TGACAGCTTCACCTTATACTC-GAGGTGAC-AGGTCTCTGGTTCAACCT  1092

seq1  TCAAATGTTTCCCAAAGCAGCAAACATGTTATGACACCTCGTGTCTGTGA  1150
      |||| ||||| |||||||| |  ||||| |||||||| || |||| ||||
seq2  TCAATTGTTT-CCAAAGCAAC-GACATG-TATGACACTTC-TGTC-GTGA  1137

seq1  GCTTTTGATA  1160
      || |||||||
seq2  GC-TTTGATA  1146

seq1: chr3_54039995_54041109
seq2: B6Ng01-138A09.g_70_1160 (reverse)

seq1  GGCTGAGAGCCATTTCAAATATCATTATCAATGACAGAATTAATTAAAGA  50
      ||||||||||||||||  ||||||||||||  ||||||    |||| || 
seq2  GGCTGAGAGCCATTTC--ATATCATTATCATAGACAGA---TATTAGAG-  44

seq1  AAGGAAACACATTGTTCTAGTCATTTTACTAACTGATTTTTATTAATTTA  100
        |||||| |||||||||||||||||| ||||||||||||   |||||||
seq2  --GGAAAC-CATTGTTCTAGTCATTTT-CTAACTGATTTT--ATAATTTA  88

seq1  CAGGGTTGTGGTTGGGTTTTTTTTTTTGTCGGCTTGTTTGTTGTTGTTAT  150
      || || || |||||||   |||||||||||||| || | | || ||||||
seq2  CAAGG-TGGGGTTGGG--ATTTTTTTTGTCGGC-TGATAG-TGGTGTTAT  133

seq1  TTTGTTTTTCTGTTTTGTTTTGTATAGAGTTTCAGTCCTCACTTTTCAGG  200
      |   | |||||||||   |||||||||||||||||| ||||| |||||||
seq2  T---TGTTTCTGTTT--GTTTGTATAGAGTTTCAGTACTCAC-TTTCAGG  177

seq1  AGCAAAGTGTGGTC-TCATATTCTAGTTCTAGGGTTTCCACAACATGGTG  249
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  AGCAAAGTGTGGTCTTCATATTCTAGTTCTAGGG-TTCCACAACATGGTG  226

seq1  CATAGAGAGTGTTTTAAAGAATAATAATTATTTTTTGAAGAGAATTAAAA  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAGTG-TTTAAAGAATAATAATTATTTTTTGAAGAGAATTAAAA  275

seq1  AGTCCCAGATCACAGTGTAGGCATATTTTGTTTCTTATCTGTCTTTTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGATCACAGTGTAGGCATATTTTGTTTCTTATCTGTCTTTTATT  325

seq1  CCCCCTGAGATGCTCACTCTTCTTGGCTGATAGGAGGTTCCTCCCCTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGAGATGCTCACTCTTCTTGGCTGATAGGAGGTTCCTCCCCTGAG  375

seq1  GGACCTGTCTTAGCTCTAATATTACAATGCTTCTTTTCACAATCTTGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGTCTTAGCTCTAATATTACAATGCTTCTTTTCACAATCTTGCTT  425

seq1  CTATAGAGGCCCCCGTCTGACTAATTCAAGGTTCAGGAATTTAGAACTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGGCCCCCGTCTGACTAATTCAAGGTTCAGGAATTTAGAACTCA  475

seq1  CACTCCTGAAACCAGGAGGACCCACAAGGAGGTTCTTCAGGATATCACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGAAACCAGGAGGACCCACAAGGAGGTTCTTCAGGATATCACTA  525

seq1  CAAACAAAGATCTTGGACAGAATGGGACTTTCCTCTGCTTCTAGTTGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAGATCTTGGACAGAATGGGACTTTCCTCTGCTTCTAGTTGAGT  575

seq1  CTCCAGGGATACTGTTCACTGTATATGCTGAGCCTTGTTACTAATGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGATACTGTTCACTGTATATGCTGAGCCTTGTTACTAATGAATT  625

seq1  CACATTAATATGTAAGATAAATATGTTCCCACCGTCCTAAACTACCCCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAATATGTAAGATAAATATGTTCCCACCGTCCTAAACTACCCCAT  675

seq1  CTACAGAATCAGTTGCAATGGTAATTTCTCCTTGAGAGAAAATACCAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAATCAGTTGCAATGGTAATTTCTCCTTGAGAGAAAATACCAACA  725

seq1  CCACAAATATGGGCATCACCTTGGAAATATCTGCTTTATTCTTAATAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATATGGGCATCACCTTGGAAATATCTGCTTTATTCTTAATAGCT  775

seq1  GCTGACTGCATCTGCTGTGTTTATCTTCGTTTCATCTCTGGGGTCTGTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGCATCTGCTGTGTTTATCTTCGTTTCATCTCTGGGGTCTGTCA  825

seq1  TGCACTGAGGTCCCTGCCATTGTTTATAGTGACTCACAGTTTCACTCTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAGGTCCCTGCCATTGTTTATAGTGACTCACAGTTTCACTCTGA  875

seq1  GGATAGCCATAGCCTTCCTAGTGCCTCCATAGCTCTCATTCCCCATTACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCATAGCCTTCCTAGTGCCTCCATAGCTCTCATTCCCCATTACA  925

seq1  TATATAACACACCAACATGTTACCTGCTGGTTTTGTTTTGCCTCCCAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACACACCAACATGTTACCTGCTGGTTTTGTTTTGCCTCCCAGTT  975

seq1  CACTCCATTACAAGGCCAACTACACTGAGATATTTTTTCCTGTTTTGTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATTACAAGGCCAACTACACTGAGATATTTTTTCCTGTTTTGTTC  1025

seq1  ATTACAACATCTACAGTGTCTAGCATACATATTTGTTGAATCAATCCAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAACATCTACAGTGTCTAGCATACATATTTGTTGAATCAATCCAAG  1075

seq1  CAAGTGACCAGAATTC  1115
      ||||||||||||||||
seq2  CAAGTGACCAGAATTC  1091