BAC Information

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BAC

Clone NameB6Ng01-138C13
Chromosome3 (Build37)
Map Location 153,979,668 - 154,115,752
singlet/doubletdoublet
Overlap geneLhx8, LOC100040810
Upstream geneSt6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980
Downstream geneLOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138C13.bB6Ng01-138C13.g
ACCDH937494DH937495
length1,144672
definitionDH937494|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C13, 5' end.DH937495|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,114,577 - 154,115,752)(153,979,668 - 153,980,339)
sequence
gaattctttaccctggagccaagagaagaactccagacaggcccgtcact
gacacattcgtcaaaaacaagaatctgagcatttcgacatgtttctgtgt
gtgaaagttgcagaccaggccttgcctaagcaaaaatgataggtcggaag
tctatctgttatgatctcatgttgttccttatactctctgcccctttctt
ccctactctggagactccagttctctagtccaaaactgagtcatccatac
tccttcaaaacatcctgtatctcatttctcatctctgccttagaaaaaag
tcagagtgtacagtagaggtgagtgaccagctcagatactgtggcagaaa
acaggtagagccatctctcattcctctgttcactaacagacagggaaagc
atgctaggatctggctcgagtgtggacccaacgtttctgtatgcagattt
tacttattcttgtaatggatgactgagacagatgtgctattaatactatt
tacaaatgaagccatcacagttcaaatgaaaaggaatttctgttcgttca
cttgagtttaaagtgccatggctagaatttgaacctggagcctcagggtg
agtttaaagggactcgggttagtgcccatgctcaacagaaggcaagttaa
gtagacaagcttccaaaagtactgtaaatatactctaccccaggcatggc
attaaaagtactgtaaatatactctaccccaggcatggcagtattatttc
ttcatattatttgatttcaccaccatcctcctatcaggcatgtatatagt
agccccgtgttactagagagaagcagacttaaagggggtaagtctcttaa
gaccacaaagccagtatctgcaaactggtttaaaacacaaatgaagacca
gtgggggaaagagaagctggtggaggtcagcttggcacgatcagaagact
cagatactcactctaagcttcagagctagtgaagtttctgggcagtttgc
tcgttagtgactatctgcacaggatttgttgacttcagagctctgactaa
agaatgttcaaagaaacagcacaccaagtttactgcagaagcaacatctt
ttagactagaactttttcttaagactatctgctcctggcgcatt
gaattctctgcatctcttggtttacctacgggttctcacctgtatgacac
gtctgcttaagcctgtcctttctgccagtttctggagggtctgtgcatct
gggttgttgtcctgagcgaactgtgcttgcataacctgtggttgttttta
aagacagatgtcgggagcaaacagttaaaagcttgatcttttgcattctg
atggtagaacagattaaggcacacaaagaaaaacgtgttgtgtattttgg
tatttgaaaatgaatacagcgaacacaagtaaaagaaaggcgtgctttgt
aaatttacatgaactcttattctaagatctttaaaaattaaccgcctgga
aactctgcccctcagctctgccattagagacactaccctctctccaccca
gtctcagaactcccaaaacacacaggagctgactctcccacccttggctt
cccatttgtaaaatatccctgcactgggactcaacaaaagactcaagtcc
caccatagttatctctagcctctgtgggtctcaacagcctcaagggctct
tacattgttttttttttttttttttttttttgttgttgttgatctacaaa
cagtgctgcagagatggattacagcatagtgcaatgatgccactgctgtg
gggtggggaggggaaaggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_154114577_154115752
seq2: B6Ng01-138C13.b_43_1186 (reverse)

seq1  AATGCGGCCAGAGCAGATTAGTCCTTAAGAAAAAGTTCTTAGTCCTAAAA  50
      |||||| |  ||||||| |||| ||||||||||||||| |||| ||||||
seq2  AATGCGCCAGGAGCAGA-TAGT-CTTAAGAAAAAGTTC-TAGT-CTAAAA  46

seq1  GATTTGGTTTGCTTTCTGCAAGTTAACTTGGGTTGTGCCTGTTTCTATTT  100
      |||     |||| |||||| ||| |||||||  |||| |||||||  |||
seq2  GAT----GTTGC-TTCTGC-AGTAAACTTGG--TGTG-CTGTTTC--TTT  85

seq1  GACACTCCTTTAGTCCAGAGCTCTGAAGTCCAAACAAATTCCTGTGGCCA  150
      ||   | ||||||| |||||||||||||||  |||||| |||||||  ||
seq2  GAACATTCTTTAGT-CAGAGCTCTGAAGTC--AACAAA-TCCTGTG--CA  129

seq1  GATAGGTCACTAACGGGCAAAACTGCCCAGAAACCTTCACTAGCTTCTTG  200
      |||| |||||||||| || |||||||||||||| |||||||||||   ||
seq2  GATA-GTCACTAACGAGC-AAACTGCCCAGAAA-CTTCACTAGCT--CTG  174

seq1  AAGCTTAGAGTGGGTATCTGAGTCTTTCCTGATCGTGCCAAGGCTGACCT  250
      |||||||||||| |||||||||||||  ||||||||||||| ||||||||
seq2  AAGCTTAGAGTGAGTATCTGAGTCTT--CTGATCGTGCCAA-GCTGACCT  221

seq1  CCACCAGCTTCTCTTTCCCCCACTGGGTCTTCATTTGTGTTTTAAACCAG  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCACCAGCTTCTCTTTCCCCCACT-GGTCTTCATTTGTGTTTTAAACCAG  270

seq1  TTTTGCAGATTACTGGCTTTGTGGTCTTAAGAGACTTACCCCCTTTAAGT  350
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGCAGA-TACTGGCTTTGTGGTCTTAAGAGACTTACCCCCTTTAAGT  318

seq1  CTGCTTCTCTCTAGTAACACGGGGCTACTATATACATGCCTGATAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTCTCTAGTAACACGGGGCTACTATATACATGCCTGATAGGAGG  368

seq1  ATGGTGGTGAAATCAAATAATATGAAGAAATAATACTGCCATGCCTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTGAAATCAAATAATATGAAGAAATAATACTGCCATGCCTGGGG  418

seq1  TAGAGTATATTTACAGTACTTTTAATGCCATGCCTGGGGTAGAGTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATATTTACAGTACTTTTAATGCCATGCCTGGGGTAGAGTATATT  468

seq1  TACAGTACTTTTGGAAGCTTGTCTACTTAACTTGCCTTCTGTTGAGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTACTTTTGGAAGCTTGTCTACTTAACTTGCCTTCTGTTGAGCATG  518

seq1  GGCACTAACCCGAGTCCCTTTAAACTCACCCTGAGGCTCCAGGTTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAACCCGAGTCCCTTTAAACTCACCCTGAGGCTCCAGGTTCAAAT  568

seq1  TCTAGCCATGGCACTTTAAACTCAAGTGAACGAACAGAAATTCCTTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCATGGCACTTTAAACTCAAGTGAACGAACAGAAATTCCTTTTCA  618

seq1  TTTGAACTGTGATGGCTTCATTTGTAAATAGTATTAATAGCACATCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTGTGATGGCTTCATTTGTAAATAGTATTAATAGCACATCTGTC  668

seq1  TCAGTCATCCATTACAAGAATAAGTAAAATCTGCATACAGAAACGTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATCCATTACAAGAATAAGTAAAATCTGCATACAGAAACGTTGGG  718

seq1  TCCACACTCGAGCCAGATCCTAGCATGCTTTCCCTGTCTGTTAGTGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTCGAGCCAGATCCTAGCATGCTTTCCCTGTCTGTTAGTGAACA  768

seq1  GAGGAATGAGAGATGGCTCTACCTGTTTTCTGCCACAGTATCTGAGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGAGAGATGGCTCTACCTGTTTTCTGCCACAGTATCTGAGCTGG  818

seq1  TCACTCACCTCTACTGTACACTCTGACTTTTTTCTAAGGCAGAGATGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACCTCTACTGTACACTCTGACTTTTTTCTAAGGCAGAGATGAGA  868

seq1  AATGAGATACAGGATGTTTTGAAGGAGTATGGATGACTCAGTTTTGGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATACAGGATGTTTTGAAGGAGTATGGATGACTCAGTTTTGGACT  918

seq1  AGAGAACTGGAGTCTCCAGAGTAGGGAAGAAAGGGGCAGAGAGTATAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTGGAGTCTCCAGAGTAGGGAAGAAAGGGGCAGAGAGTATAAGG  968

seq1  AACAACATGAGATCATAACAGATAGACTTCCGACCTATCATTTTTGCTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACATGAGATCATAACAGATAGACTTCCGACCTATCATTTTTGCTTA  1018

seq1  GGCAAGGCCTGGTCTGCAACTTTCACACACAGAAACATGTCGAAATGCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGCCTGGTCTGCAACTTTCACACACAGAAACATGTCGAAATGCTC  1068

seq1  AGATTCTTGTTTTTGACGAATGTGTCAGTGACGGGCCTGTCTGGAGTTCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTGTTTTTGACGAATGTGTCAGTGACGGGCCTGTCTGGAGTTCT  1118

seq1  TCTCTTGGCTCCAGGGTAAAGAATTC  1176
      ||||||||||||||||||||||||||
seq2  TCTCTTGGCTCCAGGGTAAAGAATTC  1144

seq1: chr3_153979668_153980339
seq2: B6Ng01-138C13.g_66_737

seq1  GAATTCTCTGCATCTCTTGGTTTACCTACGGGTTCTCACCTGTATGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCATCTCTTGGTTTACCTACGGGTTCTCACCTGTATGACAC  50

seq1  GTCTGCTTAAGCCTGTCCTTTCTGCCAGTTTCTGGAGGGTCTGTGCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTAAGCCTGTCCTTTCTGCCAGTTTCTGGAGGGTCTGTGCATCT  100

seq1  GGGTTGTTGTCCTGAGCGAACTGTGCTTGCATAACCTGTGGTTGTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTTGTCCTGAGCGAACTGTGCTTGCATAACCTGTGGTTGTTTTTA  150

seq1  AAGACAGATGTCGGGAGCAAACAGTTAAAAGCTTGATCTTTTGCATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATGTCGGGAGCAAACAGTTAAAAGCTTGATCTTTTGCATTCTG  200

seq1  ATGGTAGAACAGATTAAGGCACACAAAGAAAAACGTGTTGTGTATTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGAACAGATTAAGGCACACAAAGAAAAACGTGTTGTGTATTTTGG  250

seq1  TATTTGAAAATGAATACAGCGAACACAAGTAAAAGAAAGGCGTGCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAAATGAATACAGCGAACACAAGTAAAAGAAAGGCGTGCTTTGT  300

seq1  AAATTTACATGAACTCTTATTCTAAGATCTTTAAAAATTAACCGCCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACATGAACTCTTATTCTAAGATCTTTAAAAATTAACCGCCTGGA  350

seq1  AACTCTGCCCCTCAGCTCTGCCATTAGAGACACTACCCTCTCTCCACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCCCCTCAGCTCTGCCATTAGAGACACTACCCTCTCTCCACCCA  400

seq1  GTCTCAGAACTCCCAAAACACACAGGAGCTGACTCTCCCACCCTTGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAACTCCCAAAACACACAGGAGCTGACTCTCCCACCCTTGGCTT  450

seq1  CCCATTTGTAAAATATCCCTGCACTGGGACTCAACAAAAGACTCAAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTGTAAAATATCCCTGCACTGGGACTCAACAAAAGACTCAAGTCC  500

seq1  CACCATAGTTATCTCTAGCCTCTGTGGGTCTCAACAGCCTCAAGGGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAGTTATCTCTAGCCTCTGTGGGTCTCAACAGCCTCAAGGGCTCT  550

seq1  TACATTGTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGTTGATCTACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGTTGATCTACAAA  600

seq1  CAGTGCTGCAGAGATGGATTACAGCATAGTGCAATGATGCCACTGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCAGAGATGGATTACAGCATAGTGCAATGATGCCACTGCTGTG  650

seq1  GGGTGGGGAGGGGAAAGGAAGG  672
      ||||||||||||||||||||||
seq2  GGGTGGGGAGGGGAAAGGAAGG  672