BAC Information

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BAC

Clone NameB6Ng01-138D07
Chromosome3 (Build37)
Map Location 46,752,001 - 46,805,922
singlet/doubletdoublet
Overlap genenone
Upstream geneEG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138D07.bB6Ng01-138D07.g
ACCDH937530DH937531
length1,1451,226
definitionDH937530|Mus musculus domesticus DNA, BAC clone: B6Ng01-138D07, 5' end.DH937531|Mus musculus domesticus DNA, BAC clone: B6Ng01-138D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,752,001 - 46,753,029)(46,804,677 - 46,805,922)
sequence
gaattctcactagaattaataaaaatgactaaaaaatacttttaaaaata
tccattatccttagaaaagagagaactacaaatcaaaattgttagatttt
tatgtcacttgagtcatggtgaccacaatcaataaaaccattgttcacac
aaggttatggattaagaggaaaccccattccctattagtcagaattgaaa
ctggtgtagccaatctggaaactaataagaagaaatctcaaataaaatcg
gaaacataattcattatgtgactcaattatgttcttcacaaaggacttga
caagctactataaatattcttgctcagtgatatacatagacaccctactc
ccaatatctaggaaatgaaaataacctgtaggttctaaaagttatctgca
aatagagattatatttcatatgcacagttgaatattattcacgtataaac
caatatgaaatagtaaaatttaaatataaataattaaagctagaaaaaag
attatattgagtgaggtaaccttaaataaaaaagaagaattctgtccatc
ctctctcacctttgttttctagctccaaatcttcaggcatactataccac
atggaatgaacgcagaacccagtgatgtataaagagactaaggaaggtgg
attttatgagaacatattggaataggtatattataaattaggactgtaag
taagagtgtgcacctctaactagaggacagtgaggccaacatagaagaac
aaaagaaaaaatgaaaaaaaaaatacccaccaccaacaacaaagtttctt
tatcccaatcaagtaatcatgattttataattatctaaaatatacataat
gcatccttgagtgaaattgctgtatgaaattattaacaccgtttataaaa
taaaatttggggaaaatgggcagaagttcagtagcgcttttgagaagacc
tgagtaccatgcagagcttacacatggtggctgcctagcatctgtaagtc
caggttagggatgagactatattgttactttgaagtctgacgaaatataa
aatacatacattatgcaaagaccctcatgaaaagaataatgtaaattata
ttatttcatattcaaacttatgttgcttctttaatggcatttatt
gaattcatactggaccttctgagttttcagcacaaacacgtatgtctcaa
ccatactcctagaattaacaagtactcctttaatttatggaaaacagaac
atgtgggcataaatatgaacattaaatgtgctgaaagtgtcttcacaaag
atagacacctgtgatcatgaatggaataaattagtttaagatattctaaa
taatatatatgtagagattcttgatatcaatgaagcaattttttcttact
ttaaaaatcttccttgcagtataaggtaccaggacagctgctaagcaagt
tggataagagccagcgtgactattactaatagggggtgtaacactgacat
taatagggtgcctaacaaaatcactatatccctttgtcacatttttctat
aattcaaacaaataaccaaaggttctttgtgactagactatttgaaagtt
ttctcgaaacctttgaataataagctaaaaacattgcctctcaaagcttc
tatgtagatgggaagctaatgtaaccattctcctccaacacagtgcagtt
caggctgcctaagctacacaggcagatgcttggcaggaaaccattctttc
tatattaaaagagcacctggcaatgcatatcatcatgccagaggcagcga
ttgagccctaaaagagttcgcggtctttgcagatgtaggcagaggaatta
taattgcaaccatatctcaggccatttgtggctttctccttctttttgtg
ctggaatgaataaagggagaaaggaatgaccatgccattatctcctagtg
aatatgtcatgacaatctgcactagtgcttcatttaaaggtgccccctct
gtataaggaggaacaaattgagaagctactgaagcctggaagattctatg
gaaagataatgaccttttctggtttgctaccatcttatcatagctttctc
cctatgcaaaccagggatgacagatcaaatgtacatttagtgtgatgtga
taaattgcaatacttgcaccttcatagggactactacttgaggggaagat
gagggtcaggtataatttcagtgtataagatggaacgtgggggtcaagat
ctgttaagaggctgaatcggagaaagattacttgaagcaatcagcttcag
tcttgtctgacaatagactattgtagtctttgcagcacatgcctcgctaa
tacaattagactcacgtaaccctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46752001_46753029
seq2: B6Ng01-138D07.b_190_1191

seq1  TTCACACAAGGTTATGGATTAAGAGGAAACCCCATTCCCTATTAGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAAGGTTATGGATTAAGAGGAAACCCCATTCCCTATTAGTCAGA  50

seq1  ATTGAAACTGGTGTAGCCAATCTGGAAACTAATAAGAAGAAATCTCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACTGGTGTAGCCAATCTGGAAACTAATAAGAAGAAATCTCAAAT  100

seq1  AAAATCGGAAACATAATTCATTATGTGACTCAATTATGTTCTTCACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCGGAAACATAATTCATTATGTGACTCAATTATGTTCTTCACAAAG  150

seq1  GACTTGACAAGCTACTATAAATATTCTTGCTCAGTGATATACATAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGACAAGCTACTATAAATATTCTTGCTCAGTGATATACATAGACAC  200

seq1  CCTACTCCCAATATCTAGGAAATGAAAATAACCTGTAGGTTCTAAAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCCAATATCTAGGAAATGAAAATAACCTGTAGGTTCTAAAAGTT  250

seq1  ATCTGCAAATAGAGATTATATTTCATATGCACAGTTGAATATTATTCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAATAGAGATTATATTTCATATGCACAGTTGAATATTATTCACG  300

seq1  TATAAACCAATATGAAATAGTAAAATTTAAATATAAATAATTAAAGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACCAATATGAAATAGTAAAATTTAAATATAAATAATTAAAGCTAG  350

seq1  AAAAAAGATTATATTGAGTGAGGTAACCTTAAATAAAAAAGAAGAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGATTATATTGAGTGAGGTAACCTTAAATAAAAAAGAAGAATTCT  400

seq1  GTCCATCCTCTCTCACCTTTGTTTTCTAGCTCCAAATCTTCAGGCATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCCTCTCTCACCTTTGTTTTCTAGCTCCAAATCTTCAGGCATACT  450

seq1  ATACCACATGGAATGAACGCAGAACCCAGTGATGTATAAAGAGACTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACATGGAATGAACGCAGAACCCAGTGATGTATAAAGAGACTAAGG  500

seq1  AAGGTGGATTTTATGAGAACATATTGGAATAGGTATATTATAAATTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGATTTTATGAGAACATATTGGAATAGGTATATTATAAATTAGGA  550

seq1  CTGTAAGTAAGAGTGTGCACCTCTAACTAGAGGACAGTGAGGCCAACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTAAGAGTGTGCACCTCTAACTAGAGGACAGTGAGGCCAACATA  600

seq1  GAAGAACAAAAGAAAAAATGAAAAAAAAAATACCCACCACCAACAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACAAAAGAAAAAATGAAAAAAAAAATACCCACCACCAACAACAAA  650

seq1  GTTTCTTTATCCCAATCAAGTAATCATGATTTTATAATTATCTAAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTATCCCAATCAAGTAATCATGATTTTATAATTATCTAAAATAT  700

seq1  ACATAATGCATCCTTGAGTGAAATTGCTGTATGAAATTATTAACACCGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGCATCCTTGAGTGAAATTGCTGTATGAAATTATTAACACCGTT  750

seq1  TATAAAATAAAATTTGGGGAAAATGGGCAGAAGGTTCAGTAGGCGCTTTT  800
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TATAAAATAAAATTTGGGGAAAATGGGCAGAA-GTTCAGTA-GCGCTTTT  798

seq1  GAAGAAGACCTGAGTACCATGCAGAGCTTACACATGGTGGCTGCCTAGCA  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AGAAGACCTGAGTACCATGCAGAGCTTACACATGGTGGCTGCCTAGCA  847

seq1  TCTGTAAGTCCAGGTTAGGGATGAGACTATATTGTTTAACTTTTGAAGGT  900
      ||||||||||||||||||||||||||||||||||||  || |||||||  
seq2  TCTGTAAGTCCAGGTTAGGGATGAGACTATATTGTT--AC-TTTGAAG--  892

seq1  TCTGAACGGATATATTAAATATACATACATTTATGCAAAAGACACTCATG  950
      |||||   || ||||  || ||||||||| |||||| |||||| ||||||
seq2  TCTGA--CGAAATAT--AAAATACATACA-TTATGC-AAAGACCCTCATG  936

seq1  AAACAGAAATAAATGTTAAAATATATATTATTTCATATTTCAAAACCTTA  1000
      ||| ||||   |||||  |||| |||||||||||||| ||||||  ||||
seq2  AAA-AGAA--TAATGT--AAAT-TATATTATTTCATA-TTCAAA--CTTA  977

seq1  TGTTTGCTTCTTTTAATTGAGCATTTATT  1029
      || ||||||| ||||||   |||||||||
seq2  TG-TTGCTTC-TTTAAT--GGCATTTATT  1002

seq1: chr3_46804677_46805922
seq2: B6Ng01-138D07.g_67_1292 (reverse)

seq1  CCCAGGGTTACGCTGAGGTGCTAATGTGGTATTAGCGAGGCATGATGCTT  50
      |||||||||||| ||||   ||||  | |||||||||||||||| |||| 
seq2  CCCAGGGTTACG-TGAG--TCTAA--TTGTATTAGCGAGGCATG-TGCT-  43

seq1  GCCAACGACTACAATAGTCTAATTGTCAGCACAAGCACCTGCAGCTGATT  100
        ||| |||||||||||||| |||||||| |||||   ||| ||||||||
seq2  -GCAAAGACTACAATAGTCT-ATTGTCAG-ACAAG--ACTGAAGCTGATT  88

seq1  GCTTCAAGTAATACTTTCTTTCGATTCAGCCTCTT-ACAGATTCTTGA-C  148
      |||||||||||| ||||| | |||||||||||||| ||||| |||||| |
seq2  GCTTCAAGTAAT-CTTTC-TCCGATTCAGCCTCTTAACAGA-TCTTGACC  135

seq1  CACACGTTCCATCTTATACACTGAAAATTATACCTGACCCTCATCTTTCC  198
      | ||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  CCCACGTTCCATCTTATACACTG-AAATTATACCTGACCCTCATC-TTCC  183

seq1  CCTCAAGTAGGTAGTTCCTATGAAGGTGCAAGTATTGCCAATTTAATCCA  248
      ||||||||| ||||| ||||||||||||||||||||| |||||||   ||
seq2  CCTCAAGTA-GTAGTCCCTATGAAGGTGCAAGTATTG-CAATTTA--TCA  229

seq1  CATCACACTAAATGTACATTTGATCTGTCATCCCTGGTTTGCATAGGGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACTAAATGTACATTTGATCTGTCATCCCTGGTTTGCATAGGGAG  279

seq1  AAAGCTATGATAAGATGGTAGCAAAACCAGAAAAGGTCATTATCTTTCCA  348
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGCTATGATAAGATGGTAGC-AAACCAGAAAAGGTCATTATCTTTCCA  328

seq1  TAGAATCTTCCAGGCTTCAGTAGCTTCTCAATTTGTTCCTCCTTATACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTTCCAGGCTTCAGTAGCTTCTCAATTTGTTCCTCCTTATACAG  378

seq1  AGGGGGCACCTTTAAATGAAGCACTAGTGCAGATTGTCATGACATATTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCACCTTTAAATGAAGCACTAGTGCAGATTGTCATGACATATTCA  428

seq1  CTAGGAGATAATGGCATGGTCATTCCTTTCTCCCTTTATTCATTCCAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGATAATGGCATGGTCATTCCTTTCTCCCTTTATTCATTCCAGCA  478

seq1  CAAAAAGAAGGAGAAAGCCACAAATGGCCTGAGATATGGTTGCAATTATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAGGAGAAAGCCACAAATGGCCTGAGATATGGTTGCAATTATA  528

seq1  ATTCCTCTGCCTACATCTGCAAAGACCGCGAACTCTTTTAGGGCTCAATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCTGCCTACATCTGCAAAGACCGCGAACTCTTTTAGGGCTCAATC  578

seq1  GCTGCCTCTGGCATGATGATATGCATTGCCAGGTGCTCTTTTAATATAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCTGGCATGATGATATGCATTGCCAGGTGCTCTTTTAATATAGA  628

seq1  AAGAATGGTTTCCTGCCAAGCATCTGCCTGTGTAGCTTAGGCAGCCTGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGTTTCCTGCCAAGCATCTGCCTGTGTAGCTTAGGCAGCCTGAA  678

seq1  CTGCACTGTGTTGGAGGAGAATGGTTACATTAGCTTCCCATCTACATAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGTGTTGGAGGAGAATGGTTACATTAGCTTCCCATCTACATAGA  728

seq1  AGCTTTGAGAGGCAATGTTTTTAGCTTATTATTCAAAGGTTTCGAGAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGAGAGGCAATGTTTTTAGCTTATTATTCAAAGGTTTCGAGAAAA  778

seq1  CTTTCAAATAGTCTAGTCACAAAGAACCTTTGGTTATTTGTTTGAATTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATAGTCTAGTCACAAAGAACCTTTGGTTATTTGTTTGAATTAT  828

seq1  AGAAAAATGTGACAAAGGGATATAGTGATTTTGTTAGGCACCCTATTAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGTGACAAAGGGATATAGTGATTTTGTTAGGCACCCTATTAAT  878

seq1  GTCAGTGTTACACCCCCTATTAGTAATAGTCACGCTGGCTCTTATCCAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTTACACCCCCTATTAGTAATAGTCACGCTGGCTCTTATCCAAC  928

seq1  TTGCTTAGCAGCTGTCCTGGTACCTTATACTGCAAGGAAGATTTTTAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGCAGCTGTCCTGGTACCTTATACTGCAAGGAAGATTTTTAAAG  978

seq1  TAAGAAAAAATTGCTTCATTGATATCAAGAATCTCTACATATATATTATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAAATTGCTTCATTGATATCAAGAATCTCTACATATATATTATT  1028

seq1  TAGAATATCTTAAACTAATTTATTCCATTCATGATCACAGGTGTCTATCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATCTTAAACTAATTTATTCCATTCATGATCACAGGTGTCTATCT  1078

seq1  TTGTGAAGACACTTTCAGCACATTTAATGTTCATATTTATGCCCACATGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAGACACTTTCAGCACATTTAATGTTCATATTTATGCCCACATGT  1128

seq1  TCTGTTTTCCATAAATTAAAGGAGTACTTGTTAATTCTAGGAGTATGGTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCCATAAATTAAAGGAGTACTTGTTAATTCTAGGAGTATGGTT  1178

seq1  GAGACATACGTGTTTGTGCTGAAAACTCAGAAGGTCCAGTATGAATTC  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATACGTGTTTGTGCTGAAAACTCAGAAGGTCCAGTATGAATTC  1226