BAC Information

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BAC

Clone NameB6Ng01-138E05
Chromosome3 (Build37)
Map Location 81,028,788 - 81,029,911
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138E05.bB6Ng01-138E05.g
ACCDH937573DH937574
length1,118892
definitionDH937573|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E05, 5' end.DH937574|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttacactcttttcttgatgttcaatggattccagaaaacctg
tttctctcacaggtctaaaccattctcatgctagtagaactcaaaatctg
tttcgtatagtcatttggttgctccaataacatacttcccgggacagcat
ctagcgacatggtgaaaaatcatgcagcatgcaggttacatgtggcattc
tatagtgcgagcatatgcaggtgaaccactcctcagcaagtattagcatt
gttgccttggaaaacatgacaaatgtcaccaaacatcagatacctcagct
ctaggagatagggacaaaagcaaaacctactgtattacatgaaaaaggac
caaaagaatatgtttttaaaaaatcaactcaacatctagaacatgctgtt
tgaattttttcaaaacggagttcaggatagtttaaaattcattatctccc
atagatccgaagttggcctcgaattcaggactatctcagaaccacagact
cttcactggcattacaggtgagattacaggtacaatccagtatgccaggc
tctagaacaaacatgttaatcaattagatggattcaaatttgtatcttca
ttcagagacctaagcagaggctgtttgttcttatgcacagcattatgtgg
ttggtaaaatgactagaccttcatttgagaatacttttgaagcttttagg
gtagctatgataaatagccaattatgtttgaaatatcacatatcttattg
gtggtgctggtaggcaatatgacataggagcaaccttatggcagaagtaa
acattgatatctcataaggtgtgagaacatggctatttgtgaataagaga
ctataaaggaagaagtagaccctgaaaaacactgaacaattgttttcaag
aatcctgtctagcagagagatttgcctacgggactcaagctgtgaacagg
aaatgtgtagaggcttgcaaacacattgctagatcaggcaggagtggttg
gctttcttctgagcttcatacttttcaaacccactggaaaacattgcttt
atatcatttactatttactttagtaaccataaaagtctatgaaagagggt
atataaatcgaaatataa
gaattccaatcaaggattcatactagaacctgagattagatagcccacgg
acctagggtaaaaccaaataactactgttctattgtagtatgagattgac
tcctaatgacattccactacactcatagatgatgccttgctcagccatct
tcagagaagctgccttctgcagcacatggggacaaatacaaaggccatat
ggccaggcacaatgtggagtgttgtagaccttggaacagtcaaccttaaa
tgggatgtctccttcaaatccctcccctctgggtccagaaaacactgtgg
aagaggaggtagaaaggctgtggaggataaaaagaatagaaagcctctaa
acagagtaggacttacacacatagaaacacacacacacacacacactcac
acacatacaatggaggtagcaaccagaagtacttaactggtctatacaga
gagggtcctagagctgaaaagacaagtggacaacatgcacccatcctgaa
cccagaagctatctccaattgataaccacttgcaaaggaaaagttcgttc
ctacaaggcagtctcactgtggaaacaaattactcttaagggtaggccat
tagctcagttgtaggtggccaacagaaaactcaatggctccatgtttgtt
tgtttgtttgtttgcttgcttgtttttatcatacaggtcttttgtgttta
tattatggcctcccatctacttctgtgtcttttgtactttttttttagtt
ctttattgtttattttgccatcttctgataagttttgttttatatcatta
tattatattttattaaaatcccttagaagtctgcttgtttttctaatgag
agacagaaatgggatatggaatgggatgggaaggtggggaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81028788_81029911
seq2: B6Ng01-138E05.b_46_1160

seq1  GAATTCATTTACACTCTTTTCTTGATGTTCAATGGATTCCAGAAAACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACACTCTTTTCTTGATGTTCAATGGATTCCAGAAAACCTG  50

seq1  TTTCTCTCACAGGTCTAAACCATTCTCATGCTAGTAGAACTCAAAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCACAGGTCTAAACCATTCTCATGCTAGTAGAACTCAAAATCTG  100

seq1  TTTCGTATAGTCATTTGGTTGCTCCAATAACATACTTCCCGGGACAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTATAGTCATTTGGTTGCTCCAATAACATACTTCCCGGGACAGCAT  150

seq1  CTAGCGACATGGTGAAAAATCATGCAGCATGCAGGTTACATGTGGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGACATGGTGAAAAATCATGCAGCATGCAGGTTACATGTGGCATTC  200

seq1  TATAGTGCGAGCATATGCAGGTGAACCACTCCTCAGCAAGTATTAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGCGAGCATATGCAGGTGAACCACTCCTCAGCAAGTATTAGCATT  250

seq1  GTTGCCTTGGAAAACATGACAAATGTCACCAAACATCAGATACCTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTGGAAAACATGACAAATGTCACCAAACATCAGATACCTCAGCT  300

seq1  CTAGGAGATAGGGACAAAAGCAAAACCTACTGTATTACATGAAAAAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGATAGGGACAAAAGCAAAACCTACTGTATTACATGAAAAAGGAC  350

seq1  CAAAAGAATATGTTTTTAAAAAATCAACTCAACATCTAGAACATGCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAATATGTTTTTAAAAAATCAACTCAACATCTAGAACATGCTGTT  400

seq1  TGAATTTTTTCAAAACGGAGTTCAGGATAGTTTAAAATTCATTATCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTTCAAAACGGAGTTCAGGATAGTTTAAAATTCATTATCTCCC  450

seq1  ATAGATCCGAAGTTGGCCTCGAATTCAGGACTATCTCAGAACCACAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCCGAAGTTGGCCTCGAATTCAGGACTATCTCAGAACCACAGACT  500

seq1  CTTCACTGGCATTACAGGTGAGATTACAGGTACAATCCAGTATGCCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTGGCATTACAGGTGAGATTACAGGTACAATCCAGTATGCCAGGC  550

seq1  TCTAGAACAAACATGTTAATCAATTAGATGGATTCAAATTTGTATCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACAAACATGTTAATCAATTAGATGGATTCAAATTTGTATCTTCA  600

seq1  TTCAGAGACCTAAGCAGAGGCTGTTTGTTCTTATGCACAGCATTATGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGACCTAAGCAGAGGCTGTTTGTTCTTATGCACAGCATTATGTGG  650

seq1  TTGGTAAAATGACTAGACCTTCATTTGAGAATACTTTTGAAGCTTTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAATGACTAGACCTTCATTTGAGAATACTTTTGAAGCTTTTAGG  700

seq1  GTAGCTATGATAAATAGCCAATTATGTTTGAAATATCACATATCTTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTATGATAAATAGCCAATTATGTTTGAAATATCACATATCTTATTG  750

seq1  GTGGTGCTGGTAGGCAATATGACATAGGAGCAACCTTATGGCAGAAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTGGTAGGCAATATGACATAGGAGCAACCTTATGGCAGAAGTAA  800

seq1  ACATTGATATCTCATAAGGTGTGAGAACATGGCTATTTGTGAATAAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGATATCTCATAAGGTGTGAGAACATGGCTATTTGTGAATAAGAGA  850

seq1  CTATAAAGGAAGAAGTAAGACCCTGAAAAACACTGAACAATTGTTTTCAA  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTATAAAGGAAGAAGT-AGACCCTGAAAAACACTGAACAATTGTTTTCAA  899

seq1  GAATCCTGTCTAGCAGAGAGATCTGCCTAC-GGACTCAAGGCTGTGAACA  949
      |||||||||||||||||||||| ||||||| |||||||| ||||||||||
seq2  GAATCCTGTCTAGCAGAGAGATTTGCCTACGGGACTCAA-GCTGTGAACA  948

seq1  GGAAATGTGTAGAGGCTGCAAAACACAATTGCTAGATCAGGCAAGAAGTG  999
      |||||||||||||||||   |||||| ||||||||||||||| || ||||
seq2  GGAAATGTGTAGAGGCTTGCAAACAC-ATTGCTAGATCAGGC-AGGAGTG  996

seq1  GTTGGCTTTCCTCTGAGCCTTCATACTTTTCAAACCCACTGGAAAAACAT  1049
      |||||||||| |||||| |||||||||||||||||||||||| |||||||
seq2  GTTGGCTTTCTTCTGAG-CTTCATACTTTTCAAACCCACTGG-AAAACAT  1044

seq1  TGCTTTAATATCAATTTAACTATTTTACTTATAGTAAACATAAAAAGTCT  1099
      |||||| ||||||  || |||| ||||||| |||||| ||| ||||||||
seq2  TGCTTT-ATATCA--TTTACTA-TTTACTT-TAGTAACCAT-AAAAGTCT  1088

seq1  ATGAAAGAGGGTAATATAAA---AAATA  1124
      |||||||||||| |||||||   |||||
seq2  ATGAAAGAGGGT-ATATAAATCGAAATA  1115