BAC Information

Click to search

BAC

Clone NameB6Ng01-139B12
Chromosome3 (Build37)
Map Location 65,680,464 - 65,792,609
singlet/doubletdoublet
Overlap geneCcnl1
Upstream geneLOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneLOC625048, Veph1, Tpi-rs2, Ptx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139B12.bB6Ng01-139B12.g
ACCDH938168DH938169
length8391,104
definitionDH938168|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B12, 5' end.DH938169|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,680,464 - 65,681,301)(65,791,493 - 65,792,609)
sequence
gaattccatcagactttcaattctctttgttccacagaacagaaagcaaa
aggacattaccaaattcatcctacaaagtcagtactattctaataccaaa
accagatgaagagtcacacacacaaaagaaaactccaaaccaagctcttt
gatgaacttagatacaatacttctccactaaatacttgcaaactacactc
agcaacacattaagaggattatcgacagcttccacattgttgaagcaaag
aactcttattatttctaccttgcagtatactccagctagatggccaacaa
ccttcttgggaatgctccaacctattaggagttgcttcctattaggagta
ctgggacttcagacgtgtaccgctgttgtggattggttctaatgctactt
gtgttaattcagattccaaaattacacaggaacctgaatgtctgcatgga
agacattgagggttcctgtccccagttgactttgtttggtgaataaagtt
gctggtggccaatggctgggcagagaggcagaggcgggatgctaggattc
taagacaagaatgtgggaggaggaagaaggcgccatgccagggaagaaga
aggtctgggcctgagaaatggcaggacagagagacagagaagacagccta
tgtgtaagaggtcaggatcgtggcccaggagggcagcaggtctggattca
gggcagccaggatggaatataggttttagtaagtaataattcaagaattc
gggaatgtcaaaggggagagtgtgctagcaatgtggagggttgagcagtt
taagtctaagtcatattgaaatataagggctgtgtgtgt
gaattcccttaatcttttacgaacctcagttcaagtaaaaccagatcctt
ggtttcagaagaaaaagtaatttcaggataagccagtaagaagcagagct
gggcttcatttaaaaaaaaaaaaaaaaaagcctactgggaagtggtgtac
aaacttctaatcccagcacttgagatccagtggaaggcagatctctgagt
tcgaggccagcctggtctacagagtgagttccagggcagtcagggctgca
cagggaaacccttccaaaagaaagagggaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagagagaaagagag
gagagagagagagagaagtcattgcaggaaaaaataaaacatacccaaaa
gcacgcttgtggggttctcaagaaagatttgtagtttattaaagaccttt
aaattctttataacatcttcatttatgtgctttgttcatatgggtgaaca
tactaaccatggtttgcacctacagctctctccttccaacatgtgggtcc
cagatatcaaattcaggtcagcatacttgccagtaggtgactttacaatt
gaggaacttttccagtccatttttaaaaacaggttctcaggatatagccc
ttgctggcctaaaactcaatatgcacaaaaggttggctccaatttacaga
tctgcccatccctgcctcctaggtattaaaaggagagaagcttgggggaa
gactaaggtatatacccaagtatgggtctggttagcaaggacggtcacag
ttaagtatcttagccttctcatacatagtgggagctttcaaagggttgct
aggaacttgattttccttgttttgtttttcagataaatgatattataggg
tagctctggtagtgactttagataggattatttatatttgatacgaaaat
caagagtcactgggggttcataaggtaaagaatatgtactataaattatc
tgatgaggttcaggacgttgaccctttcagctgggtaggaaaacgcctga
gcaggcgttgtatattctgtcggattcttgattctcagctgtggagagcc
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65680464_65681301
seq2: B6Ng01-139B12.b_48_886

seq1  GAATTCCATCAGACTTTCAATTCTCTTTGTTCCACAGAACAGAAAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGACTTTCAATTCTCTTTGTTCCACAGAACAGAAAGCAAA  50

seq1  AGGACATTACCAAATTCATCCTACAAAGTCAGTACTATTCTAATACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTACCAAATTCATCCTACAAAGTCAGTACTATTCTAATACCAAA  100

seq1  ACCAGATGAAGAGTCACACACACAAAAGAAAACTCCAAACCAAGCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGAAGAGTCACACACACAAAAGAAAACTCCAAACCAAGCTCTTT  150

seq1  GATGAACTTAGATACAATACTTCTCCACTAAATACTTGCAAACTACACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTTAGATACAATACTTCTCCACTAAATACTTGCAAACTACACTC  200

seq1  AGCAACACATTAAGAGGATTATCGACAGCTTCCACATTGTTGAAGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACACATTAAGAGGATTATCGACAGCTTCCACATTGTTGAAGCAAAG  250

seq1  AACTCTTATTATTTCTACCTTGCAGTATACTCCAGCTAGATGGCCAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTATTATTTCTACCTTGCAGTATACTCCAGCTAGATGGCCAACAA  300

seq1  CCTTCTTGGGAATGCTCCAACCTATTAGGAGTTGCTTCCTATTAGGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGGGAATGCTCCAACCTATTAGGAGTTGCTTCCTATTAGGAGTA  350

seq1  CTGGGACTTCAGACGTGTACCGCTGTTGTGGATTGGTTCTAATGCTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTTCAGACGTGTACCGCTGTTGTGGATTGGTTCTAATGCTACTT  400

seq1  GTGTTAATTCAGATTCCAAAATTACACAGGAACCTGAATGTCTGCATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATTCAGATTCCAAAATTACACAGGAACCTGAATGTCTGCATGGA  450

seq1  AGACATTGAGGGTTCCTGTCCCCAGTTGACTTTGTTTGGTGAATAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGAGGGTTCCTGTCCCCAGTTGACTTTGTTTGGTGAATAAAGTT  500

seq1  GCTGGTGGCCAATGGCTGGGCAGAGAGGCAGAGGCGGGATGCTAGGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGCCAATGGCTGGGCAGAGAGGCAGAGGCGGGATGCTAGGATTC  550

seq1  TAAGACAAGAATGTGGGAGGAGGAAGAAGGCGCCATGCCAGGGAAGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAGAATGTGGGAGGAGGAAGAAGGCGCCATGCCAGGGAAGAAGA  600

seq1  AGGTCTGGGCCTGAGAAATGGCAGGACAGAGAGACAGAGAAGACAGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGGGCCTGAGAAATGGCAGGACAGAGAGACAGAGAAGACAGCCTA  650

seq1  TGTGTAAGAGGTCAGGATCGTGGCCCAGGAGGGCAGCAGGTCTGGATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGAGGTCAGGATCGTGGCCCAGGAGGGCAGCAGGTCTGGATTCA  700

seq1  GGGCAGCCAGGATGGAATATAGGTTTTAGTAAGTAATAATTCAAGAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCAGGATGGAATATAGGTTTTAGTAAGTAATAATTCAAGAATTC  750

seq1  GGGAATGTCAAAGGGGAGAGTGTGCTAGCAATGTGGAGGGTTGAGCAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTCAAAGGGGAGAGTGTGCTAGCAATGTGGAGGGTTGAGCAGTT  800

seq1  TAAGTCTAAGTCATATTGAAATATAA-GGCTGTGTGTGT  838
      |||||||||||||||||||||||||| ||||||||||||
seq2  TAAGTCTAAGTCATATTGAAATATAAGGGCTGTGTGTGT  839

seq1: chr3_65791493_65792609
seq2: B6Ng01-139B12.g_71_1174 (reverse)

seq1  CAGAGGCTTCTCACAAGCTGAGAATCAAGAATCCCGACAGAATTAACAAC  50
      ||||||| ||||   ||||||||||||||||| ||||||||||  |||||
seq2  CAGAGGC-TCTCCACAGCTGAGAATCAAGAAT-CCGACAGAATATACAAC  48

seq1  GCTTGCTACAGCCTTTCTCCTTTCCCAGCTGGAAGTGGTCAACGTTCTTG  100
      || |||| ||| | || ||| | |||||||| ||| ||||||||| ||  
seq2  GCCTGCT-CAGGCGTTTTCC-TACCCAGCTGAAAG-GGTCAACGTCCT--  93

seq1  GAACCTCATCAGATTATTTATAGTACATATTCTTTTACTTTATGAAACCC  150
      |||||||||||||| ||||||||||||||||| ||||| ||||||| |||
seq2  GAACCTCATCAGATAATTTATAGTACATATTC-TTTACCTTATGAACCCC  142

seq1  CAGTGACTCCTGATTTTCTGTTATCAAATTATAATAATCCTATCT-AAGT  199
      ||||||||| ||||||||   ||||||||   ||||||||||||| ||||
seq2  CAGTGACTCTTGATTTTC--GTATCAAATATAAATAATCCTATCTAAAGT  190

seq1  CACTACCAGAGCTACCCTATAATATCATTTATCTGAAAGACAAAACAAGG  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACTACCAGAGCTACCCTATAATATCATTTATCTGAAAAACAAAACAAGG  240

seq1  AAAATCAAGTTTCCTAGCAACCCTTTGAAAGCTACCACTATGTATGAG-A  298
      ||||||||| ||||||||||||||||||||||| |||||||||||||| |
seq2  AAAATCAAG-TTCCTAGCAACCCTTTGAAAGCTCCCACTATGTATGAGAA  289

seq1  GGCTAAGATACTTAACTGTGACCGTCCTTGCTAACCAGACCCATACTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGATACTTAACTGTGACCGTCCTTGCTAACCAGACCCATACTTGG  339

seq1  GTATATACCTTAGTCTTCCCCCAAGCTTCTCTCCTTTTAATACCTAGGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACCTTAGTCTTCCCCCAAGCTTCTCTCCTTTTAATACCTAGGAG  389

seq1  GCAGGGATGGGCAGATCTGTAAATTGGAGCCAACCTTTTGTGCATATTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATGGGCAGATCTGTAAATTGGAGCCAACCTTTTGTGCATATTGA  439

seq1  GTTTTAGGCCAGCAAGGGCTATATCCTGAGAACCTGTTTTTAAAAATGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGGCCAGCAAGGGCTATATCCTGAGAACCTGTTTTTAAAAATGGA  489

seq1  CTGGAAAAGTTCCTCAATTGTAAAGTCACCTACTGGCAAGTATGCTGACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAGTTCCTCAATTGTAAAGTCACCTACTGGCAAGTATGCTGACC  539

seq1  TGAATTTGATATCTGGGACCCACATGTTGGAAGGAGAGAGCTGTAGGTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGATATCTGGGACCCACATGTTGGAAGGAGAGAGCTGTAGGTGC  589

seq1  AAACCATGGTTAGTATGTTCACCCATATGAACAAAGCACATAAATGAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGGTTAGTATGTTCACCCATATGAACAAAGCACATAAATGAAGA  639

seq1  TGTTATAAAGAATTTAAAGGTCTTTAATAAACTACAAATCTTTCTTGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAAGAATTTAAAGGTCTTTAATAAACTACAAATCTTTCTTGAGA  689

seq1  ACCCCACAAGCGTGCTTTTGGGTATGTTTTATTTTTTCCTGCAATGACTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACAAGCGTGCTTTTGGGTATGTTTTATTTTTTCCTGCAATGACTT  739

seq1  CTCTCTCTCTCTCTCCTCTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTT  798
      ||||||||||||||||||||||||||    ||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCCTCTCTTTCTC----TCTTTCTTTCTTTCTTTCTT  785

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCCTCTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCCTCTTTC  835

seq1  TTTTGGAAGGGTTTCCCTGTGCAGCCCTGACTGCCCTGGAACTCACTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAGGGTTTCCCTGTGCAGCCCTGACTGCCCTGGAACTCACTCTG  885

seq1  TAGACCAGGCTGGCCTCGAACTCAGAGATCTGCCTTCCACTGGATCTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAGATCTGCCTTCCACTGGATCTCAA  935

seq1  GTGCTGGGATTAGAAGTTTGTACACCACTTCCCAGTAGGCTTTTTTTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAGAAGTTTGTACACCACTTCCCAGTAGGCTTTTTTTTTT  985

seq1  TTTTTTTTAAATGAAGCCCAGCTCTGCTTCTTACTGGCTTATCCTGAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAATGAAGCCCAGCTCTGCTTCTTACTGGCTTATCCTGAAAT  1035

seq1  TACTTTTTCTTCTGAAACCAAGGATCTGGTTTTACTTGAACTGAGGTTCG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCTTCTGAAACCAAGGATCTGGTTTTACTTGAACTGAGGTTCG  1085

seq1  TAAAAGATTAAGGGAATTC  1117
      |||||||||||||||||||
seq2  TAAAAGATTAAGGGAATTC  1104