BAC Information

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BAC

Clone NameB6Ng01-139D16
Chromosome3 (Build37)
Map Location 80,567,462 - 80,710,427
singlet/doubletdoublet
Overlap geneGria2, Glrb
Upstream geneTmem144, 1110032E23Rik, EG626797
Downstream geneEG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139D16.bB6Ng01-139D16.g
ACCDH938268DH938269
length1,138248
definitionDH938268|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D16, 5' end.DH938269|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,567,462 - 80,568,622)(80,710,180 - 80,710,427)
sequence
gaattctagatgtcctatcaccaaggtctaatatctcacaatttaaaaag
ccaatttaaaatttttgggcatgtgttttgggaaccaaaccaagggccat
gtgtcgggaaggaaagtgctctaccaaggagctacatccgagctttagtt
ttctagagtgaaggtatgacaatataaacttggctgacttttcacctcca
gcctttctgactgagcctcctgagtatactaccatgtcacattcaatttc
taaaaatttatataaaatattttcagtattgtttccctggcatatatctg
aggttgcaatagaggttactttagattcatgtaatgcatatgcaaattaa
taatactggtgacctagtttgcctcattttcattttgtgaaatgagtgta
gtttcatgagagtcgtagctcaggcatgttttctggacctgggccactga
tagtgcttggtgagtgttgctagaaatagcttaaatggtgctcctacaca
ggcatatggggggagggaaagactaataggtatgtttggataccagtaag
ttttcaacaccatattctttgctgttaaaatagaggctaccaaactaaaa
tcctagcagagaatgaagccatgtcttgtcatcttctcggatgcaaatgc
catgttgtagcccgctgttcttttcctagtctgtagcagctctttatcaa
gcatctaccaagtcttacttgtcccttgtaaatccacattgccattctct
gatacttcaattctcatttcccaatccttcttactcctcaccactgcact
ccttacttgccttgcttaatcctgagtacttttctgtgtagaattttaat
ttaatgtttctactctttacaacttaagacaaaagtaggtactgattaac
cttagtgtctgggcaagtggttacaaatccaggttccacctggtgcgcac
attccttttatgtggactctgctttaccaagtgactgagatctaagtatt
gggtaatgagcttcacaccaccacatggacaagagatgggaaattatcat
ggcaactgtcagaagagttgaagagtgataaatagttaaagaaacacgag
acataaacctgctatgacctaaagatgagcacatgcta
tctatttagttatataccctaagttttgattggataatttgggtttttgg
tggttagcttcttgagttctttataaattttggatattagtcctgtatcg
aatgtgagattagtaaagattttttttcccaatctgtatgtaggttctca
aactgaccataatgacatcaaaatcaacctaaatataaaactatgacctc
tattgagaaacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80567462_80568622
seq2: B6Ng01-139D16.b_41_1178

seq1  GAATTCTAGATGTCCTATCACCAAGGTCTAATATCTCACAATTTAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATGTCCTATCACCAAGGTCTAATATCTCACAATTTAAAAAG  50

seq1  CCAATTTAAAATTTTTGGGCATGTGTTTTGGGAACCAAACCAAGGGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTAAAATTTTTGGGCATGTGTTTTGGGAACCAAACCAAGGGCCAT  100

seq1  GTGTCGGGAAGGAAAGTGCTCTACCAAGGAGCTACATCCGAGCTTTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGGGAAGGAAAGTGCTCTACCAAGGAGCTACATCCGAGCTTTAGTT  150

seq1  TTCTAGAGTGAAGGTATGACAATATAAACTTGGCTGACTTTTCACCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGTGAAGGTATGACAATATAAACTTGGCTGACTTTTCACCTCCA  200

seq1  GCCTTTCTGACTGAGCCTCCTGAGTATACTACCATGTCACATTCAATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTGACTGAGCCTCCTGAGTATACTACCATGTCACATTCAATTTC  250

seq1  TAAAAATTTATATAAAATATTTTCAGTATTGTTTCCCTGGCATATATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTATATAAAATATTTTCAGTATTGTTTCCCTGGCATATATCTG  300

seq1  AGGTTGCAATAGAGGTTACTTTAGATTCATGTAATGCATATGCAAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCAATAGAGGTTACTTTAGATTCATGTAATGCATATGCAAATTAA  350

seq1  TAATACTGGTGACCTAGTTTGCCTCATTTTCATTTTGTGAAATGAGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGGTGACCTAGTTTGCCTCATTTTCATTTTGTGAAATGAGTGTA  400

seq1  GTTTCATGAGAGTCGTAGCTCAGGCATGTTTTCTGGACCTGGGCCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGAGAGTCGTAGCTCAGGCATGTTTTCTGGACCTGGGCCACTGA  450

seq1  TAGTGCTTGGTGAGTGTTGCTAGAAATAGCTTAAATGGTGCTCCTACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTGGTGAGTGTTGCTAGAAATAGCTTAAATGGTGCTCCTACACA  500

seq1  GGCATATGGGGGGAGGGAAAGACTAATAGGTATGTTTGGATACCAGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGGGGGGAGGGAAAGACTAATAGGTATGTTTGGATACCAGTAAG  550

seq1  TTTTCAACACCATATTCTTTGCTGTTAAAATAGAGGCTACCAAACTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACACCATATTCTTTGCTGTTAAAATAGAGGCTACCAAACTAAAA  600

seq1  TCCTAGCAGAGAATGAAGCCATGTCTTGTCATCTTCTCGGATGCAAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAGAGAATGAAGCCATGTCTTGTCATCTTCTCGGATGCAAATGC  650

seq1  CATGTTGTAGCCCGCTGTTCTTTTCCTAGTCTGTAGCAGCTCTTTATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTAGCCCGCTGTTCTTTTCCTAGTCTGTAGCAGCTCTTTATCAA  700

seq1  GCATCTACCAAGTCTTACTTGTCCCTTGTAAATCCACATTGCCATTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTACCAAGTCTTACTTGTCCCTTGTAAATCCACATTGCCATTCTCT  750

seq1  GATACTTCAATTCTCATTTCCCAATCCTTCTTACTCCTCACCACTGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTCAATTCTCATTTCCCAATCCTTCTTACTCCTCACCACTGCACT  800

seq1  CCTTACTTGCCTTGCTTAATCCTGAGTACTTTTCTGTGTAGAATTTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTGCCTTGCTTAATCCTGAGTACTTTTCTGTGTAGAATTTTAAT  850

seq1  TTAATGTTTCTACTCTTTACAACTTAAGACAAAAGTAGGTACTGATTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTTCTACTCTTTACAACTTAAGACAAAAGTAGGTACTGATTAAC  900

seq1  CTTAGTGTCTGGGCAAGTGGTTACAAATCCAGGTTCCACCTGGTGCGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGTCTGGGCAAGTGGTTACAAATCCAGGTTCCACCTGGTGCGCAC  950

seq1  ATTCCTTTTATGTGGACTCTGCTTTACCAAGTGACTGAAGATCCTAAGTA  1000
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  ATTCCTTTTATGTGGACTCTGCTTTACCAAGTGACTG-AGAT-CTAAGTA  998

seq1  TTGGGTAATGAGCCTCCAACACCACCAACAATGGACAAGAGATGGGAAAT  1050
      ||||||||||||| ||  |||||||||   ||||||||||||||||||||
seq2  TTGGGTAATGAGCTTC--ACACCACCA--CATGGACAAGAGATGGGAAAT  1044

seq1  TATCATGGCAACTGTCAAGAAGAGTTGAAGAGTGATAAATAGTTAAAGGA  1100
      |||||||||||||||| |||||||||||||||||||||||||||||||  
seq2  TATCATGGCAACTGTC-AGAAGAGTTGAAGAGTGATAAATAGTTAAAG--  1091

seq1  AAACAGGAAGACATTAGACACCTGCTATTGGCCCCTAAAAAGATGGAAAG  1150
      ||||| | ||||||   | |||||||||  | ||    |||||||   ||
seq2  AAACACG-AGACAT---AAACCTGCTAT--GACC---TAAAGATG---AG  1129

seq1  CAAACATGCTA  1161
      |  ||||||||
seq2  C--ACATGCTA  1138

seq1: chr3_80710180_80710427
seq2: B6Ng01-139D16.g_71_318 (reverse)

seq1  CACTCACACACACACACACACACACACACACACACGTGTTTCTCAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACACACACACACACACACACACACACACGTGTTTCTCAATAGA  50

seq1  GGTCATAGTTTTATATTTAGGTTGATTTTGATGTCATTATGGTCAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAGTTTTATATTTAGGTTGATTTTGATGTCATTATGGTCAGTTTG  100

seq1  AGAACCTACATACAGATTGGGAAAAAAAATCTTTACTAATCTCACATTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTACATACAGATTGGGAAAAAAAATCTTTACTAATCTCACATTCG  150

seq1  ATACAGGACTAATATCCAAAATTTATAAAGAACTCAAGAAGCTAACCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGACTAATATCCAAAATTTATAAAGAACTCAAGAAGCTAACCACC  200

seq1  AAAAACCCAAATTATCCAATCAAAACTTAGGGTATATAACTAAATAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAAATTATCCAATCAAAACTTAGGGTATATAACTAAATAGA  248