BAC Information

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BAC

Clone NameB6Ng01-139F05
Chromosome3 (Build37)
Map Location 57,399,128 - 57,400,262
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1
Downstream geneCommd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139F05.bB6Ng01-139F05.g
ACCDH938340DH938341
length8171,123
definitionDH938340|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F05, 5' end.DH938341|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacttaggaatctattatcggctgaaaagtacttagagaaat
gttcaacatccatagtctttagagaaatgcaaatcaaaacaactctgaga
ttccacagtatagccatcagaatggctaagatcaaaatctcaaacaacag
ttcatgctagtgaggctgtggagcctagggaacactcctccattggtagt
ggggttgtaaacttctacaagtactttggaaatcattttggtgatttctc
agaaaattaggagtggatctacttcaagacccagctatatcactcctggt
ggatatgtaagactatgacagaaactcctctgacaactgacagaagccaa
ggcttgagaaatggaactatgtaactcctgggcatatacctaaagtatgc
tccatcataccacaagaacacttgctcaactatgttcatagcagctttgt
gcataatagcaaaaaaattggaaacaacctaaatgtccctcaaccaaaga
atgactaatgaatgaaatgtggtaagtttacacaatggagtttaactcag
ctattaaaatcaatgacatcatgaaatttgcaggcaaatgggtggaatta
taaaagatcaccctgagtgagataacccagaaccaaaaagataaacatgg
tatgtactcacttataactgggtattagccataaaataataataaccacg
atataatccacagacccaaagaagctaagtataaaggaaggctcaaggga
acagtagatctcactgagaaggggaaatagaatagacattgtagatgggg
tgtggtagaggtgggca
gaattccatactcttgatgtattcactgcccccagaaccttcccctcctg
caacaggactcttcctataagaaaatccactgggcactgtcaaccaagga
tgaaagtacacccaccgcacctcttaggcaggtaggactctgaagaaaag
ggggagtggtgtggaatgcctacaatactggtacttggagagcagaggca
ggaagatcagaagtttgaggtcaccttcgcttataaagttggagccacag
gagagagctacatgagaccttgtccgacaaaccaacaagcaaggtaagga
aaggaggaaagtgaataatatctcccaagtcccctttgccagcttagtat
agcactaatgatatcaatgaagaggccactcaagagactagggtcacaaa
tttcctgagaattaaacacaaaggtctgtcctggtgatatttctcccttg
gataatgcctttctctaaccaacaataatacacaggattctgtactttca
gccaaatagtgcaaagtacctagcaaatgttcaactcatgaatcatcaga
acaagcaagaaaggacagacaacttttggaaggacaaaagcaaatagtac
ttatgatcataggtctattctaaagtctaaagaaatgatgtagatctagc
taatgcacatcactgacaggatattgaacagaggacatttctgggttgaa
tgctgtctaagatactcgggacaggaatgttcagaagagcagacaagggc
cttgatcactccttccagctctgggttttttaaagatgttaaatattttg
agactgttgttttggtttgtttaggagacagagtttcattatgtagccct
gtagaagctctgtaaaacatcctgcttctgtccccccttctgagtgctgg
aaataaagacctataccaatcaaacccatcaacatttcctccaaatctgc
ttcaaaggtttgaatatgtactagaggaaatttatccctaagaatcccca
aaaatagtttttggaaacagtattgacataaaagattagttgacttcaat
acgttaatgtcatgactgcaagttgcaacttcagtctttgtgcctaaaaa
atttaaataacatgtggttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57399128_57400262
seq2: B6Ng01-139F05.g_69_1191

seq1  GAATTCCATACTCTTGATGTATTCACTGCCCCCAGAACCTTCCCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTCTTGATGTATTCACTGCCCCCAGAACCTTCCCCTCCTG  50

seq1  CAACAGGACTCTTCCTATAAGAAAATCCACTGGGCACTGTCAACCAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGACTCTTCCTATAAGAAAATCCACTGGGCACTGTCAACCAAGGA  100

seq1  TGAAAGTACACCCACCGCACCTCTTAGGCAGGTAGGACTCTGAAGAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTACACCCACCGCACCTCTTAGGCAGGTAGGACTCTGAAGAAAAG  150

seq1  GGGGAGTGGTGTGGAATGCCTACAATACTGGTACTTGGAGAGCAGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGGTGTGGAATGCCTACAATACTGGTACTTGGAGAGCAGAGGCA  200

seq1  GGAAGATCAGAAGTTTGAGGTCACCTTCGCTTATAAAGTTGGAGCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATCAGAAGTTTGAGGTCACCTTCGCTTATAAAGTTGGAGCCACAG  250

seq1  GAGAGAGCTACATGAGACCTTGTCCGACAAACCAACAAGCAAGGTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCTACATGAGACCTTGTCCGACAAACCAACAAGCAAGGTAAGGA  300

seq1  AAGGAGGAAAGTGAATAATATCTCCCAAGTCCCCTTTGCCAGCTTAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAAGTGAATAATATCTCCCAAGTCCCCTTTGCCAGCTTAGTAT  350

seq1  AGCACTAATGATATCAATGAAGAGGCCACTCAAGAGACTAGGGTCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAATGATATCAATGAAGAGGCCACTCAAGAGACTAGGGTCACAAA  400

seq1  TTTCCTGAGAATTAAACACAAAGGTCTGTCCTGGTGATATTTCTCCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAGAATTAAACACAAAGGTCTGTCCTGGTGATATTTCTCCCTTG  450

seq1  GATAATGCCTTTCTCTAACCAACAATAATACACAGGATTCTGTACTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGCCTTTCTCTAACCAACAATAATACACAGGATTCTGTACTTTCA  500

seq1  GCCAAATAGTGCAAAGTACCTAGCAAATGTTCAACTCATGAATCATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATAGTGCAAAGTACCTAGCAAATGTTCAACTCATGAATCATCAGA  550

seq1  ACAAGCAAGAAAGGACAGACAACTTTTGGAAGGACAAAAGCAAATAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGAAAGGACAGACAACTTTTGGAAGGACAAAAGCAAATAGTAC  600

seq1  TTATGATCATAGGTCTATTCTAAAGTCTAAAGAAATGATGTAGATCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATCATAGGTCTATTCTAAAGTCTAAAGAAATGATGTAGATCTAGC  650

seq1  TAATGCACATCACTGACAGGATATTGAACAGAGGACATTTCTGGGTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCACATCACTGACAGGATATTGAACAGAGGACATTTCTGGGTTGAA  700

seq1  TGCTGTCTAAGATACTCGGGACAGGAATGTTCAGAAGAGCAGACAAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTAAGATACTCGGGACAGGAATGTTCAGAAGAGCAGACAAGGGC  750

seq1  CTTGATCACTCCTTCCAGCTCTGGGTTTTTTAAAGATGTTAAATATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCACTCCTTCCAGCTCTGGGTTTTTTAAAGATGTTAAATATTTTG  800

seq1  AGACTGTTG-TTTGGTTTGTTTAGGAGACAGAGTTTCATTATGTAGCCCT  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTGTTTTGGTTTGTTTAGGAGACAGAGTTTCATTATGTAGCCCT  850

seq1  GTAG-AGCTCTGTAAAACA-CCTGCTTCTGTCCCCCCCTTCTGAGTGCTG  897
      |||| |||||||||||||| ||||||||||| ||||||||||||||||||
seq2  GTAGAAGCTCTGTAAAACATCCTGCTTCTGT-CCCCCCTTCTGAGTGCTG  899

seq1  GAAATAAAGACCTATACC-ATCAAACCCAATCAACATTTCCTCCAAATCT  946
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  GAAATAAAGACCTATACCAATCAAACCC-ATCAACATTTCCTCCAAATCT  948

seq1  GCTTCAAAGGTTTGAATATGTACTAGAGAAAATTTTATACCCTAAGATAC  996
      |||||||||||||||||||||||||||| ||| ||||| ||||||||  |
seq2  GCTTCAAAGGTTTGAATATGTACTAGAGGAAA-TTTAT-CCCTAAGAATC  996

seq1  CCCAAAAATAGTTTTTTGAAAACAGGTATTGACAAAAAAAGATTTAGTTG  1046
      ||||||||||| |||||| ||||| |||||||| | |||||| |||||||
seq2  CCCAAAAATAG-TTTTTGGAAACA-GTATTGAC-ATAAAAGA-TTAGTTG  1042

seq1  ACATCCAAAACGTTTAATGTTCAATGACTGCAAAAGTTGCAACTTCCAGT  1096
      || | ||| ||| |||||||   ||||||||  |||||||||||| ||| 
seq2  AC-TTCAATACG-TTAATGT--CATGACTGC--AAGTTGCAACTT-CAG-  1084

seq1  TCTTTGTGCTATAAAATTTTAAATATCATTTTGTTCTCT  1135
      |||||||||   |||| |||||||| ||| | |||||||
seq2  TCTTTGTGCCTAAAAAATTTAAATAACATGTGGTTCTCT  1123