BAC Information

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BAC

Clone NameB6Ng01-139F10
Chromosome3 (Build37)
Map Location 152,269,866 - 152,372,202
singlet/doubletdoublet
Overlap geneAk5, LOC100040705
Upstream geneIfi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3
Downstream genePigk, Rpl29-ps1, St6galnac5, LOC100040750, St6galnac3, EG545578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139F10.bB6Ng01-139F10.g
ACCDH938350DH938351
length1,067915
definitionDH938350|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F10, 5' end.DH938351|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,371,118 - 152,372,202)(152,269,866 - 152,270,779)
sequence
gaattcagatcatagggcatccttaaagatgaggcaatgggctacggaag
agatgcaaagacagaagcagtggccagagtgaaggccaagagccaagggt
tgggagagagtcctggaagaaggacgtggattctcccaaagcctccagaa
gtagggcagccaccctatcgaattcagacttttaaccgcagagctataag
ccaggacatttgcttcagaccaccgggccatcgcaccctggctacttggt
gatttttttttcatggcatggttaatgggtgttaataggcctagctatct
tctgtttttgttttgtttttgttttcctagagatgatagccagtaactgt
aagaatcataaatgtgactaaagaggtgacttggtgggtaaaagtgtttg
tcaagcaaacctgatgatgccactccatagaactcacagtgaaaggagag
aactgagtcatgaaagctgtcatcaaacttgcgcgtgcacatcatgtcag
gtgtgcaccagaacacacatacacacacacacacacacacacacactcat
gccagttctatcaccaccaccaccatcatcgtcaacaataataatattaa
caaatgtaaatttaaaaaaacaaaccattgctgcacatttaatatggagg
tggtttctcttctatcctcaccgaaggtgcagtcccagtgaggtttgcac
actctcacacctgtcacatcctacaggtatttctgttataatgcctatga
tagtaagactgaaggcctcgacgccaagggcatcaacatcttcttcacct
tgaattctcaatgcccacaaaatgccgcatgcaagcatgtgttggataac
tcagtgatgaatgtgtttcaaagagatcaaagactgatctcctgaaaatg
ataccaggggagtgcaagggaaagcacttagagcccttactctgtagcat
cttccggcaacagctgctttgacatgaaatttgagaaattcattactgat
caattgtgcagatttcaaacagttctcgtcttgtctctgtgtccttattt
gacttaaaaaacagaac
gaattctggcactagctggctttttccttttccccttcattctgtccagg
accccagcccataggataatgacatcacatgctgggtgggtctcccctct
gtagttaaacttctctggaaactctcacagatgtgcccagagctatatct
cctcagtgattctaaccccagtcatgttcagaacgaaggggacccaccac
agtggccccctgttaacctacagttctacatctctctcagggtacttcca
tgatctacttgagtcaccttagaaactcagctgggacacccttctcagtt
actaagatcacaaacagaaacaaggagtgcttttgtttcccgacaatgga
tagttaaacaagagaaaataagccagggtactgaaaagaaacaccagctc
actggcttacgcgttacaaacccatcatctccttactgtcgcttgtagtg
ctgtttgtttggatttatttatttacttatttttgtttgtttgtttttcg
agacggggtttctctatatagccctggctgtcctggaactcactctgtag
acccggctggccttgaactcaaaaaatccacctgcctctgcctctcaagt
gctgggattaaaggtgtgtgccaccaccacccagctgatttctttcttta
taagcattttgcttttcgtttcagttactctataccgtgatgccagtgga
gatggtgctaggtaccagaggttgaacactgacagtttgggggtaagagt
ctcagttacttttctgctgtgatagagcacctcacaaaaatcagttgagg
ggagagaggtacattttggcttacagtcccagaggggttacatccattat
tgacaggtaaggatggatggatgagcatgggctgctttgccagtcatgaa
ggaaagaggggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_152371118_152372202
seq2: B6Ng01-139F10.b_48_1114 (reverse)

seq1  GTTCTGTTTTTATAGGTTCAAAATTAAGGACCACAAGAAGAACAAAGGAC  50
      |||||||||||  ||  |||||  |||||| ||| |||   ||||  |||
seq2  GTTCTGTTTTTTAAG--TCAAA--TAAGGA-CAC-AGA--GACAA--GAC  40

seq1  GAGAACTGTTTTGAAATCTGCACAAATGGATCAGTAATGGAATTTTCCTC  100
      |||||||| |||||||||||||| ||| |||||||||| ||||||  |||
seq2  GAGAACTG-TTTGAAATCTGCAC-AATTGATCAGTAAT-GAATTT--CTC  85

seq1  AAATTTCATGTACAAAGCAGCTGTTGCCGGAAGGATGCTACAGAGTAAGG  150
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  AAATTTCATGT-CAAAGCAGCTGTTGCCGGAA-GATGCTACAGAGTAAGG  133

seq1  GCTCTAAGTGCCTTCCCTTGCACTCCCCTGGTATCATTCTCAGGAGATCA  200
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  GCTCTAAGTGCTTTCCCTTGCACTCCCCTGGTATCATTTTCAGGAGATCA  183

seq1  GTCTTTGATCTCTTTGAAACACATTCATCACTGAGTTATCCAACACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGATCTCTTTGAAACACATTCATCACTGAGTTATCCAACACATGC  233

seq1  TTGCATGCGGCATTTTTGTGGGCATTGAGAATTCAAGGTGAAGAAGATGT  300
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TTGCATGCGGCA-TTTTGTGGGCATTGAGAATTCAAGGTGAAGAAGATG-  281

seq1  TTGATGCCCTTGGCGTCGAGGCCTTCAGTCTTACTATCATAGGCATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCCCTTGGCGTCGAGGCCTTCAGTCTTACTATCATAGGCATTATA  331

seq1  ACAGAAATACCTGTAGGATGTGACAGGTGTGAGAGTGTGC-AACCTCACT  399
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGAAATACCTGTAGGATGTGACAGGTGTGAGAGTGTGCAAACCTCACT  381

seq1  GGGACTGCACCTTCGGTGAGGATAGAAGAGAAACCACCTCCATATTAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGCACCTTCGGTGAGGATAGAAGAGAAACCACCTCCATATTAAAT  431

seq1  GTGCAGCAATGGTTTGTTTTTTTAAATTTACATTTGTTAATATTATTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCAATGGTTTGTTTTTTTAAATTTACATTTGTTAATATTATTATT  481

seq1  GTTGACGATGATGGTGGTGGTGGTGATAGAACTGGCATGAGTGTGTGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACGATGATGGTGGTGGTGGTGATAGAACTGGCATGAGTGTGTGTGT  531

seq1  GTGTGTGTGTGTGTGTATGTGTGTTCTGGTGCACACCTGACATGATGTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTATGTGTGTTCTGGTGCACACCTGACATGATGTGC  581

seq1  ACGCGCAAGTTTGATGACAGCTTTCATGACTCAGTTCTCTCCTTTCACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCAAGTTTGATGACAGCTTTCATGACTCAGTTCTCTCCTTTCACTG  631

seq1  TGAGTTCTATGGAGTGGCATCATCAGGTTTGCTTGACAAACACTTTTACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTATGGAGTGGCATCATCAGGTTTGCTTGACAAACACTTTTACC  681

seq1  CACCAAGTCACCTCTTTAGTCACATTTATGATTCTTACAGTTACTGGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTCACCTCTTTAGTCACATTTATGATTCTTACAGTTACTGGCTA  731

seq1  TCATCTCTAGGAAAACAAAAACAAAACAAAAACAGAAGATAGCTAGGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTAGGAAAACAAAAACAAAACAAAAACAGAAGATAGCTAGGCCT  781

seq1  ATTAACACCCATTAACCATGCCATGAAAAAAAAATCACCAAGTAGCCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACCCATTAACCATGCCATGAAAAAAAAATCACCAAGTAGCCAGG  831

seq1  GTGCGATGGCCCGGTGGTCTGAAGCAAATGTCCTGGCTTATAGCTCTGCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGATGGCCCGGTGGTCTGAAGCAAATGTCCTGGCTTATAGCTCTGCG  881

seq1  GTTAAAAGTCTGAATTCGATAGGGTGGCTGCCCTACTTCTGGAGGCTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGTCTGAATTCGATAGGGTGGCTGCCCTACTTCTGGAGGCTTTG  931

seq1  GGAGAATCCACGTCCTTCTTCCAGGACTCTCTCCCAACCCTTGGCTCTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCCACGTCCTTCTTCCAGGACTCTCTCCCAACCCTTGGCTCTTG  981

seq1  GCCTTCACTCTGGCCACTGCTTCTGTCTTTGCATCTCTTCCGTAGCCCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCACTCTGGCCACTGCTTCTGTCTTTGCATCTCTTCCGTAGCCCAT  1031

seq1  TGCCTCATCTTTAAGGATGCCCTATGATCTGAATTC  1085
      ||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATCTTTAAGGATGCCCTATGATCTGAATTC  1067

seq1: chr3_152269866_152270779
seq2: B6Ng01-139F10.g_65_979

seq1  GAATTCTGGCACTAGCTGGCTTTTTCCTTTTCCCCTTCATTCTGTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCACTAGCTGGCTTTTTCCTTTTCCCCTTCATTCTGTCCAGG  50

seq1  ACCCCAGCCCATAGGATAATGACATCACATGCTGGGTGGGTCTCCCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCCCATAGGATAATGACATCACATGCTGGGTGGGTCTCCCCTCT  100

seq1  GTAGTTAAACTTCTCTGGAAACTCTCACAGATGTGCCCAGAGCTATATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAAACTTCTCTGGAAACTCTCACAGATGTGCCCAGAGCTATATCT  150

seq1  CCTCAGTGATTCTAACCCCAGTCATGTTCAGAACGAAGGGGACCCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGATTCTAACCCCAGTCATGTTCAGAACGAAGGGGACCCACCAC  200

seq1  AGTGGCCCCCTGTTAACCTACAGTTCTACATCTCTCTCAGGGTACTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCCCTGTTAACCTACAGTTCTACATCTCTCTCAGGGTACTTCCA  250

seq1  TGATCTACTTGAGTCACCTTAGAAACTCAGCTGGGACACCCTTCTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTACTTGAGTCACCTTAGAAACTCAGCTGGGACACCCTTCTCAGTT  300

seq1  ACTAAGATCACAAACAGAAACAAGGAGTGCTTTTGTTTCCCGACAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATCACAAACAGAAACAAGGAGTGCTTTTGTTTCCCGACAATGGA  350

seq1  TAGTTAAACAAGAGAAAATAAGCCAGGGTACTGAAAAGAAACACCAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAACAAGAGAAAATAAGCCAGGGTACTGAAAAGAAACACCAGCTC  400

seq1  ACTGGCTTACGCGTTACAAACCCATCATCTCCTTACTGTCGCTTGTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTACGCGTTACAAACCCATCATCTCCTTACTGTCGCTTGTAGTG  450

seq1  CTGTTTGTTTGGATTTATTTATTTACTTATTTTTGTTTGTTTGTTTTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTTTGGATTTATTTATTTACTTATTTTTGTTTGTTTGTTTTTCG  500

seq1  AGACGGGGTTTCTCTATATAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGGGTTTCTCTATATAGCCCTGGCTGTCCTGGAACTCACTCTGTAG  550

seq1  ACCCGGCTGGCCTTGAACTCAAAAAATCCACCTGCCTCTGCCTCTCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGCTGGCCTTGAACTCAAAAAATCCACCTGCCTCTGCCTCTCAAGT  600

seq1  GCTGGGATTAAAGGTGTGTGCCACCACCACCCAGCTGATTTCTTTCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGTGTGTGCCACCACCACCCAGCTGATTTCTTTCTTTA  650

seq1  TAAGCATTTTGCTTTTCGTTTCAGTTACTCTATACCGTGATGCCAGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTTTGCTTTTCGTTTCAGTTACTCTATACCGTGATGCCAGTGGA  700

seq1  GATGGTGCTAGGTACCAGAGGTTGAACACTGACAGTTTGGGGGTAAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGCTAGGTACCAGAGGTTGAACACTGACAGTTTGGGGGTAAGAGT  750

seq1  CTCAGTTACTTTTCTGCTGTGATAGAGCACCTCACAAAAATCAGTTGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTACTTTTCTGCTGTGATAGAGCACCTCACAAAAATCAGTTGAGG  800

seq1  GGAGAGAGGTACATTTTGGCTTACAGTCCCAGAGGGGTTACAATCCATTA  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAGAGAGGTACATTTTGGCTTACAGTCCCAGAGGGGTTAC-ATCCATTA  849

seq1  -TGACAGGTAAGGATGGATGGATGAGCATGGGCTGC-TTGCCAGTCATGA  898
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGACAGGTAAGGATGGATGGATGAGCATGGGCTGCTTTGCCAGTCATGA  899

seq1  AGGAGAGAGGGGGGAG  914
      |||| |||||||||||
seq2  AGGAAAGAGGGGGGAG  915