BAC Information

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BAC

Clone NameB6Ng01-139J07
Chromosome3 (Build37)
Map Location 87,074,172 - 87,226,697
singlet/doubletdoublet
Overlap geneCd5l, Fcrl1
Upstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2
Downstream geneFcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139J07.bB6Ng01-139J07.g
ACCDH938528DH938529
length8351,107
definitionDH938528|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J07, 5' end.DH938529|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,074,172 - 87,075,006)(87,225,574 - 87,226,697)
sequence
gaattctctttcttcttaaggctgaataatgttctgctgtgtgtaggtat
acacgtatgtgccatgttttatccattcatgacttgctaaatactttggt
tgcatcttcccccttaatgagaacaacaaataccaagaacaatggcgatg
acctataatgctgtgggtttatgaggccccagtggctaacagctgcaaag
gaggcaactcattcctggcacgtgactcttggtagggatagggtatccct
acatattctcctacggtggagttataaggtaactccatttaagctacttt
tgtatgtatatattttagaaagatactgagaacctatctcaaagacccta
gggaagaacttactattattttgctaagtggacataatattaaactgatt
tctaatgacttatcaccatgcccataggccagtctatctcttaaccctca
tctgagaagtttcttttagcagtagatgatcaacacagaaactcacaact
ggtcaatgtacagagagtaagagactgagaagtgtttagttctggtgtat
atcatctatctatatcacacccttccttctgagggttaggggacagaaag
aatataaaagccagaggtggcagatgactatggtgagatagggtttcctg
gacacagcagagcagttaacacctgtgaacttgtagtagctgtaacaaaa
tatgccagacttgtgcaagccaatcagacaaaaaatgagcatggataggg
caggtgcgcaaaaagtcccatccctagctgaggggcactgccaattgata
gcctctgtgagaggaagagttaattttatttaaag
gaattcagatttttctggttccatatgtcaactctttcttctgggagtga
taagctcttggaaaatgtccttgaaattttcccttggctaaactatagta
gtgctgtccaggctggcagcctttgcttcatgggctgtaaccaggtcatc
tccctcccctgagttaggcaaaggactgtggtagagctccggctggtgga
ctatatgaggaatgcatgtgtgccatgttcagtgctggccccacagcctc
ctgggtcacttgccatcctgtctctgcttttgcagagaatttgggaagct
gatggcaggattgtcagataggaggagactggtctccctttagcctggaa
accccaagatctctggggttatctgttagacctgttaaatgtcaataaac
atttgttgctttataaaatatgaatgggatattacaaatacttgagttta
tagagtagagttttcacctcctgacactctctgcctcacataagcctcat
atctcactgctgttgcttcagtgcctgccatatcttggcctctgaaagat
tcactggggacgtgtgagagaagctggcaggtaaaggcccctgtcctcgg
agagattaattttaggtaggacaatcaacataaaataatgtcagagggtg
agaagtgcccagagaaatatggaaacaggtgggggagcttggtagggcct
ggggcatgcctcgaatcaaatgggagcaggaaacctcttggggaagcagc
gtttgaatagagactggaagtagaaacgggcaaacaatctataggtgtca
ggggagagagttatagaatacagaaggacacacacacaatccagacacca
ctttgacacactcctgtctcccatttttcctagttatgccagaagtgtgt
gtgcagagacacacatgtattcacaaacacacaatttaaaatggatctgt
gtcaatactgaaagtgcctattttaaaataactcaacttcttttagagtg
actctgctcagtagccagtctctgcaaaaagccctctattccactaaaga
gagactcaggcagaggctggttatatgtttggcctctctgttcaggagct
ggatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87074172_87075006
seq2: B6Ng01-139J07.b_46_880

seq1  GAATTCTCTTTCTTCTTAAGGCTGAATAATGTTCTGCTGTGTGTAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTTCTTAAGGCTGAATAATGTTCTGCTGTGTGTAGGTAT  50

seq1  ACACGTATGTGCCATGTTTTATCCATTCATGACTTGCTAAATACTTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTATGTGCCATGTTTTATCCATTCATGACTTGCTAAATACTTTGGT  100

seq1  TGCATCTTCCCCCTTAATGAGAACAACAAATACCAAGAACAATGGCGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTCCCCCTTAATGAGAACAACAAATACCAAGAACAATGGCGATG  150

seq1  ACCTATAATGCTGTGGGTTTATGAGGCCCCAGTGGCTAACAGCTGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAATGCTGTGGGTTTATGAGGCCCCAGTGGCTAACAGCTGCAAAG  200

seq1  GAGGCAACTCATTCCTGGCACGTGACTCTTGGTAGGGATAGGGTATCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACTCATTCCTGGCACGTGACTCTTGGTAGGGATAGGGTATCCCT  250

seq1  ACATATTCTCCTACGGTGGAGTTATAAGGTAACTCCATTTAAGCTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCTCCTACGGTGGAGTTATAAGGTAACTCCATTTAAGCTACTTT  300

seq1  TGTATGTATATATTTTAGAAAGATACTGAGAACCTATCTCAAAGACCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATATATTTTAGAAAGATACTGAGAACCTATCTCAAAGACCCTA  350

seq1  GGGAAGAACTTACTATTATTTTGCTAAGTGGACATAATATTAAACTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAACTTACTATTATTTTGCTAAGTGGACATAATATTAAACTGATT  400

seq1  TCTAATGACTTATCACCATGCCCATAGGCCAGTCTATCTCTTAACCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGACTTATCACCATGCCCATAGGCCAGTCTATCTCTTAACCCTCA  450

seq1  TCTGAGAAGTTTCTTTTAGCAGTAGATGATCAACACAGAAACTCACAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAGTTTCTTTTAGCAGTAGATGATCAACACAGAAACTCACAACT  500

seq1  GGTCAATGTACAGAGAGTAAGAGACTGAGAAGTGTTTAGTTCTGGTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATGTACAGAGAGTAAGAGACTGAGAAGTGTTTAGTTCTGGTGTAT  550

seq1  ATCATCTATCTATATCACACCCTTCCTTCTGAGGGTTAGGGGACAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTATCTATATCACACCCTTCCTTCTGAGGGTTAGGGGACAGAAAG  600

seq1  AATATAAAAGCCAGAGGTGGCAGATGACTATGGTGAGATAGGGTTTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAGCCAGAGGTGGCAGATGACTATGGTGAGATAGGGTTTCCTG  650

seq1  GACACAGCAGAGCAGTTAACACCTGTGAACTTGTAGTAGCTGTAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCAGAGCAGTTAACACCTGTGAACTTGTAGTAGCTGTAACAAAA  700

seq1  TATGCCAGACTTGTGCAAGCCAATCAGACAAAAAATGAGCATGGATAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGACTTGTGCAAGCCAATCAGACAAAAAATGAGCATGGATAGGG  750

seq1  CAGGTGCGCAAAAAGTCCCATCCCTAGCTGAGGGGCACTGCCAATTGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCGCAAAAAGTCCCATCCCTAGCTGAGGGGCACTGCCAATTGATA  800

seq1  GCCTCTGTGAGAGGAAGAGTTAATTTTATTTAAAG  835
      |||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTGAGAGGAAGAGTTAATTTTATTTAAAG  835

seq1: chr3_87225574_87226697
seq2: B6Ng01-139J07.g_66_1172 (reverse)

seq1  GCCATCCAGCTTCCTGGAGACCCAGA-AGGCCACAACATATTACACCAAG  49
      |||||||||| ||||| |    |||| |||||| |||||||   | | ||
seq2  GCCATCCAGC-TCCTGAA----CAGAGAGGCCA-AACATAT---AACCAG  41

seq1  CCCTCGCCTGAGTCTCTCTTTAGTGGAATAGA-GGCTATGTGCAGAGACC  98
      ||   ||||||||||||||||||||||||||| |||| | ||||||||| 
seq2  CCTCTGCCTGAGTCTCTCTTTAGTGGAATAGAGGGCTTTTTGCAGAGAC-  90

seq1  TTGGCTTACTGAGCAAGAGGTCACTCTAAAAGGAAGTTGAGTTATTTTAA  148
       |||| |||||||| ||| |||||||||||| |||||||||||||||| |
seq2  -TGGC-TACTGAGC-AGA-GTCACTCTAAAA-GAAGTTGAGTTATTTT-A  134

seq1  AAATAGGCACTTTTCAGTATTTGACACAGAATCCATTTTAAATTGTGTGT  198
      |||||||||| |||||||| ||||||||| ||||||||||||||||||||
seq2  AAATAGGCAC-TTTCAGTA-TTGACACAG-ATCCATTTTAAATTGTGTGT  181

seq1  TTGTGAATACATGTGTGTCTCTGCACACACACTTCTGGCATAACTAGGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATACATGTGTGTCTCTGCACACACACTTCTGGCATAACTAGGAA  231

seq1  AAATGGGAGACAGGAGTGTGTCAAAGTGGTGTCTGGATTGTGTGTGTGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGAGACAGGAGTGTGTCAAAGTGGTGTCTGGATTGTGTGTGTGTC  281

seq1  CTTCTGTATTCTATAACTCTCTCCCCTGACACCTATAGATTGTTTGCCCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTATTCTATAACTCTCTCCCCTGACACCTATAGATTGTTTGCCCG  331

seq1  TTTCTACTTCCAGTCTCTATTCAAACGCTGCTTCCCCAAGAGGTTTCCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTTCCAGTCTCTATTCAAACGCTGCTTCCCCAAGAGGTTTCCTG  381

seq1  CTCCCATTTGATTCGAGGCATGCCCCAGGCCCTACCAAGCTCCCCCACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTTGATTCGAGGCATGCCCCAGGCCCTACCAAGCTCCCCCACCT  431

seq1  GTTTCCATATTTCTCTGGGCACTTCTCACCCTCTGACATTATTTTATGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATATTTCTCTGGGCACTTCTCACCCTCTGACATTATTTTATGTT  481

seq1  GATTGTCCTACCTAAAATTAATCTCTCCGAGGACAGGGGCCTTTACCTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCCTACCTAAAATTAATCTCTCCGAGGACAGGGGCCTTTACCTGC  531

seq1  CAGCTTCTCTCACACGTCCCCAGTGAATCTTTCAGAGGCCAAGATATGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTCTCACACGTCCCCAGTGAATCTTTCAGAGGCCAAGATATGGC  581

seq1  AGGCACTGAAGCAACAGCAGTGAGATATGAGGCTTATGTGAGGCAGAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGAAGCAACAGCAGTGAGATATGAGGCTTATGTGAGGCAGAGAG  631

seq1  TGTCAGGAGGTGAAAACTCTACTCTATAAACTCAAGTATTTGTAATATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAGGTGAAAACTCTACTCTATAAACTCAAGTATTTGTAATATCC  681

seq1  CATTCATATTTTATAAAGCAACAAATGTTTATTGACATTTAACAGGTCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATATTTTATAAAGCAACAAATGTTTATTGACATTTAACAGGTCTA  731

seq1  ACAGATAACCCCAGAGATCTTGGGGTTTCCAGGCTAAAGGGAGACCAGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAACCCCAGAGATCTTGGGGTTTCCAGGCTAAAGGGAGACCAGTC  781

seq1  TCCTCCTATCTGACAATCCTGCCATCAGCTTCCCAAATTCTCTGCAAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTATCTGACAATCCTGCCATCAGCTTCCCAAATTCTCTGCAAAAG  831

seq1  CAGAGACAGGATGGCAAGTGACCCAGGAGGCTGTGGGGCCAGCACTGAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGGATGGCAAGTGACCCAGGAGGCTGTGGGGCCAGCACTGAAC  881

seq1  ATGGCACACATGCATTCCTCATATAGTCCACCAGCCGGAGCTCTACCACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACACATGCATTCCTCATATAGTCCACCAGCCGGAGCTCTACCACA  931

seq1  GTCCTTTGCCTAACTCAGGGGAGGGAGATGACCTGGTTACAGCCCATGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGCCTAACTCAGGGGAGGGAGATGACCTGGTTACAGCCCATGAA  981

seq1  GCAAAGGCTGCCAGCCTGGACAGCACTACTATAGTTTAGCCAAGGGAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCTGCCAGCCTGGACAGCACTACTATAGTTTAGCCAAGGGAAAA  1031

seq1  TTTCAAGGACATTTTCCAAGAGCTTATCACTCCCAGAAGAAAGAGTTGAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGACATTTTCCAAGAGCTTATCACTCCCAGAAGAAAGAGTTGAC  1081

seq1  ATATGGAACCAGAAAAATCTGAATTC  1124
      ||||||||||||||||||||||||||
seq2  ATATGGAACCAGAAAAATCTGAATTC  1107