BAC Information

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BAC

Clone NameB6Ng01-139K01
Chromosome3 (Build37)
Map Location 83,745,845 - 83,778,108
singlet/doubletdoublet
Overlap geneD930015E06Rik
Upstream geneFgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
Downstream geneMnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139K01.bB6Ng01-139K01.g
ACCDH938564DH938565
length1,2011,058
definitionDH938564|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K01, 5' end.DH938565|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,745,845 - 83,747,072)(83,777,046 - 83,778,108)
sequence
gaattctcctccaagttgtcaaacatccagaaacaaccagctattggcta
ctaagaatacgaaagaaacagcatgatctggtcaactgagcttctgcaac
tcagtaactctggagcaagactcggacttcaaacccttcgtgaacattta
ttttaggcagtcaagtccattccatctgtgcaaaatgccaagaaaaatga
ttcccaaggagactcagagagctgtggttacttagcctccctgaagtggt
gcaggcagggcagctgcagactgagaagcagtgcctgctgcaatcgaccc
caagcagaggctgccttgagtctctgaaagaaccaaataatgactcaggg
aaacctggccatgctgcaagaaagtttgtagcttcagttttatggatgag
gcaggacccagtgcacactcgactgagctagtcccacaacagaaactgta
aagccccacctcacctgaggtgtcagactcatcagtagctacatagacaa
tagagaggtgatctagcagggcttgagtgttctcttcaggttgcttggag
gagttttccactgctacaatgatgttcatctccaagtgtagcgcatcatc
agatcccagagagcaactctgaaatgggaggcgtggggaaaggagaaaaa
ctcaaaaacaaaacaaaacagaacaaaacaaaaatcatctgagctctaag
actgcatattgctggagaaaagaaaacagtcgaggcaagagcctattgag
gatgagaatacactgcagttttcattttgatttttaagaggcaggaaaga
aaactgagatctgctaaatattgttataccttcaattgctgacacacttt
attatgtaaactgcattccagttgcaccgcagcaggctggtattagtggt
ctctgcctaaaagatagaaggaaggaaacttaggtggaggccccaagcat
catccagtcctagagcgagtcattcatacagtgagttccaaacagctact
gactgctgcatgctatgctgtactgaaatatattctgtgtcagtagcgta
cacctctcagaagaatgaaagtctagtaggcagaagcagagtatgtaata
tccaagtaaactgtccttggtggtttagtattgttaaaccagacctcacc
ttaattaaggggtaacgtatgatagctatggacattttttgcttttttta
a
gaattctctttgggagttacaggtgtgagcatattcattagcaagtttgg
agacactttagggaaggacacttgtcatggccttaggaaggcctggccat
caatacattggagcagcctccaaacccaagcttttttattttcctttttt
aaaatcactgagtgtgtatccacagacccaattttcattctcagagccct
ttattcttagacgttctgtctcagtgtatttatgctttgaccataaaacc
tggagcgttctacagtaaaagaaactaagaaaccatgttctgccaagaga
cctttatctccactgtgagcttttactgttatttcaagccctgtagtcag
tgctgtgtcgtttctggatagcaggatctagccgtgagcattatgagcat
tatttcctcgtgggatggtgtgctccccctgggtgcggagcctttgtgaa
atgaggatggagcatttctcttgcccatcccccacttcattggccgaagt
cattgtcttgactttttttttttaatttgtgctatctaggtgttggcaaa
gtttactaaaaagcagcagcttggtagagctttgatggaaacagactatt
gaggaatatggaggacagtcaggtgccatcctgccttgctcagctgacaa
gccacataaacagccagacagctggttatagctaactcatttccatgtca
gagtttccaggctgttgtttttgaagggtgtgtgtgacgtctgcacctgg
gctgactttttctaggagtaaggaatccaggtatccacacagttctgaga
atatcagctgcatccagcacattctacagaataggggactgagccctgct
ccctgagcttcctgctacagcttgtatctgactcaggctggctcatttct
aatcaaaggtcttttcttttgactagccacctttccaaactttttttaaa
tttaatttgttttatttggctttatttatatgtatagagaaaatattgac
tgtttaggaaaagaagaaagaccggatttgaatcatgtagacattaggac
tttaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83745845_83747072
seq2: B6Ng01-139K01.b_44_1244

seq1  GAATTCTCCTCCAAGTTGTCAAACATCCAGAAACAACCAGCTATTGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCAAGTTGTCAAACATCCAGAAACAACCAGCTATTGGCTA  50

seq1  CTAAGAATACGAAAGAAACAGCATGATCTGGTCAACTGAGCTTCTGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATACGAAAGAAACAGCATGATCTGGTCAACTGAGCTTCTGCAAC  100

seq1  TCAGTAACTCTGGAGCAAGACTCGGACTTCAAACCCTTCGTGAACATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACTCTGGAGCAAGACTCGGACTTCAAACCCTTCGTGAACATTTA  150

seq1  TTTTAGGCAGTCAAGTCCATTCCATCTGTGCAAAATGCCAAGAAAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCAGTCAAGTCCATTCCATCTGTGCAAAATGCCAAGAAAAATGA  200

seq1  TTCCCAAGGAGACTCAGAGAGCTGTGGTTACTTAGCCTCCCTGAAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGGAGACTCAGAGAGCTGTGGTTACTTAGCCTCCCTGAAGTGGT  250

seq1  GCAGGCAGGGCAGCTGCAGACTGAGAAGCAGTGCCTGCTGCAATCGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGGGCAGCTGCAGACTGAGAAGCAGTGCCTGCTGCAATCGACCC  300

seq1  CAAGCAGAGGCTGCCTTGAGTCTCTGAAAGAACCAAATAATGACTCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAGGCTGCCTTGAGTCTCTGAAAGAACCAAATAATGACTCAGGG  350

seq1  AAACCTGGCCATGCTGCAAGAAAGTTTGTAGCTTCAGTTTTATGGATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGCCATGCTGCAAGAAAGTTTGTAGCTTCAGTTTTATGGATGAG  400

seq1  GCAGGACCCAGTGCACACTCGACTGAGCTAGTCCCACAACAGAAACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCCAGTGCACACTCGACTGAGCTAGTCCCACAACAGAAACTGTA  450

seq1  AAGCCCCACCTCACCTGAGGTGTCAGACTCATCAGTAGCTACATAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCACCTCACCTGAGGTGTCAGACTCATCAGTAGCTACATAGACAA  500

seq1  TAGAGAGGTGATCTAGCAGGGCTTGAGTGTTCTCTTCAGGTTGCTTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGTGATCTAGCAGGGCTTGAGTGTTCTCTTCAGGTTGCTTGGAG  550

seq1  GAGTTTTCCACTGCTACAATGATGTTCATCTCCAAGTGTAGCGCATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCCACTGCTACAATGATGTTCATCTCCAAGTGTAGCGCATCATC  600

seq1  AGATCCCAGAGAGCAACTCTGAAATGGGAGGCGTGGGGAAAGGAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCAGAGAGCAACTCTGAAATGGGAGGCGTGGGGAAAGGAGAAAAA  650

seq1  CTCAAAAACAAAACAAAACAGAACAAAACAAAAATCATCTGAGCTCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAACAAAACAAAACAGAACAAAACAAAAATCATCTGAGCTCTAAG  700

seq1  ACTGCATATTGCTGGAGAAAAGAAAACAGTCGAGGCAAGAGCCTATTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATATTGCTGGAGAAAAGAAAACAGTCGAGGCAAGAGCCTATTGAG  750

seq1  GATGAGAATACACTGCAGTTTTCATTTTGATTTTTAAGAGGCAGGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAATACACTGCAGTTTTCATTTTGATTTTTAAGAGGCAGGAAAGA  800

seq1  AAACTGAGATCTGCTAAATATTGTTATACCTTCAATTGCTGACACACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGATCTGCTAAATATTGTTATACCTTCAATTGCTGACACACTTT  850

seq1  ATTATGTAAACTGCATTCCAGTTGCACCCGCAGCAGGCTGGTATTAGTGG  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTATGTAAACTGCATTCCAGTTGCA-CCGCAGCAGGCTGGTATTAGTGG  899

seq1  TCTCTGCCTAAAAGATAGAAGGAAGGAAACTTAGGTGGAGGCCCCAAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTAAAAGATAGAAGGAAGGAAACTTAGGTGGAGGCCCCAAGCA  949

seq1  TCATCCAGTCCTAAGAGCGAGTCATTCATACAGTGAGTTCCAAACAGCTA  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGTCCT-AGAGCGAGTCATTCATACAGTGAGTTCCAAACAGCTA  998

seq1  CTGACTGCTGCATGCTATGCTGTACTGGAAATATATTCTGTTGTCAGTAG  1050
      |||||||||||||||||||||||||| ||||||||||||| |||||||| 
seq2  CTGACTGCTGCATGCTATGCTGTACT-GAAATATATTCTG-TGTCAGTA-  1045

seq1  GCGTACA-CTCTCAAGGAAGGAATGAAAGTTCCTAGTAAGGCAGGAAGCA  1099
      ||||||| ||||||  ||| ||||||||||  ||||| ||||| ||||| 
seq2  GCGTACACCTCTCA--GAA-GAATGAAAGT--CTAGT-AGGCA-GAAGC-  1087

seq1  AGAGTATGT-ATATCCCATGTATACTGTCTTGGGTGTGTTTAGTATTTGG  1148
      ||||||||| |||| ||| ||| |||||| | |||| ||||||||||  |
seq2  AGAGTATGTAATAT-CCAAGTAAACTGTCCTTGGTG-GTTTAGTATT--G  1133

seq1  TTAAAAACAAAGAACTACACTTTTATTTTAAAGTGGGGTTACCCATTAAT  1198
      |||||     ||| || ||| || |||   ||  ||||| ||  || |  
seq2  TTAAA---CCAGACCT-CACCTTAATT---AA--GGGGTAACGTATGA--  1172

seq1  AACCTATTGACTATTTTTTGCTTTTTTTAA  1228
       | |||| ||| ||||||||||||||||||
seq2  TAGCTATGGAC-ATTTTTTGCTTTTTTTAA  1201

seq1: chr3_83777046_83778108
seq2: B6Ng01-139K01.g_68_1125 (reverse)

seq1  TTTTTAAAGTCCTATATGTCTACAATGATCCAAATTCGTGTCTTTCTCTT  50
      |||||||||||||| |||||||| ||||| ||||| || ||||||||  |
seq2  TTTTTAAAGTCCTA-ATGTCTAC-ATGATTCAAATCCG-GTCTTTCTTCT  47

seq1  TTTCCTAAACAGTCATATTTTTCTCTATACATATAAAATAAAGCCAAATA  100
      |||||||||||||||   |||||||||||||||| |||||||||||||||
seq2  TTTCCTAAACAGTCAATATTTTCTCTATACATAT-AAATAAAGCCAAATA  96

seq1  AAACAAAATTAAATTTAAAAAAAAGTTTGGAAAGGTGGCTAGTCCAAAAG  150
      |||| ||||||||||| |||||||||||||||||||||||||| ||||||
seq2  AAAC-AAATTAAATTT-AAAAAAAGTTTGGAAAGGTGGCTAGT-CAAAAG  143

seq1  AAAAGACCTTTGATTAGAAATGAGCCAGCCTGAGTCAGATAC-AGCTGTA  199
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAGACCTTTGATTAGAAATGAGCCAGCCTGAGTCAGATACAAGCTGTA  193

seq1  GCAGG-AGCTCAGGGAGCAGGGCTCAGTCCCCTATTCTGTAGAATGTGCT  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGCTCAGGGAGCAGGGCTCAGTCCCCTATTCTGTAGAATGTGCT  243

seq1  GGATGCAGCTGATATTCTCAGAACTGTGTGGATACCTGGATTCCTTACTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGCTGATATTCTCAGAACTGTGTGGATACCTGGATTCCTTACTC  293

seq1  CTAGAAAAAGTCAGCCCAGGTGCAGACGTCACACACACCCTTCAAAAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAAGTCAGCCCAGGTGCAGACGTCACACACACCCTTCAAAAACA  343

seq1  ACAGCCTGGAAACTCTGACATGGAAATGAGTTAGCTATAACCAGCTGTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGAAACTCTGACATGGAAATGAGTTAGCTATAACCAGCTGTCT  393

seq1  GGCTGTTTATGTGGCTTGTCAGCTGAGCAAGGCAGGATGGCACCTGACTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTATGTGGCTTGTCAGCTGAGCAAGGCAGGATGGCACCTGACTG  443

seq1  TCCTCCATATTCCTCAATAGTCTGTTTCCATCAAAGCTCTACCAAGCTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATATTCCTCAATAGTCTGTTTCCATCAAAGCTCTACCAAGCTGC  493

seq1  TGCTTTTTAGTAAACTTTGCCAACACCTAGATAGCACAAATTAAAAAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTAGTAAACTTTGCCAACACCTAGATAGCACAAATTAAAAAAAA  543

seq1  AAAGTCAAGACAATGACTTCGGCCAATGAAGTGGGGGATGGGCAAGAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGACAATGACTTCGGCCAATGAAGTGGGGGATGGGCAAGAGAA  593

seq1  ATGCTCCATCCTCATTTCACAAAGGCTCCGCACCCAGGGGGAGCACACCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCATCCTCATTTCACAAAGGCTCCGCACCCAGGGGGAGCACACCA  643

seq1  TCCCACGAGGAAATAATGCTCATAATGCTCACGGCTAGATCCTGCTATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACGAGGAAATAATGCTCATAATGCTCACGGCTAGATCCTGCTATCC  693

seq1  AGAAACGACACAGCACTGACTACAGGGCTTGAAATAACAGTAAAAGCTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACGACACAGCACTGACTACAGGGCTTGAAATAACAGTAAAAGCTCA  743

seq1  CAGTGGAGATAAAGGTCTCTTGGCAGAACATGGTTTCTTAGTTTCTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGATAAAGGTCTCTTGGCAGAACATGGTTTCTTAGTTTCTTTTA  793

seq1  CTGTAGAACGCTCCAGGTTTTATGGTCAAAGCATAAATACACTGAGACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAACGCTCCAGGTTTTATGGTCAAAGCATAAATACACTGAGACAG  843

seq1  AACGTCTAAGAATAAAGGGCTCTGAGAATGAAAATTGGGTCTGTGGATAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTAAGAATAAAGGGCTCTGAGAATGAAAATTGGGTCTGTGGATAC  893

seq1  ACACTCAGTGATTTTAAAAAAGGAAAATAAAAAAGCTTGGGTTTGGAGGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGTGATTTTAAAAAAGGAAAATAAAAAAGCTTGGGTTTGGAGGC  943

seq1  TGCTCCAATGTATTGATGGCCAGGCCTTCCTAAGGCCATGACAAGTGTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAATGTATTGATGGCCAGGCCTTCCTAAGGCCATGACAAGTGTCC  993

seq1  TTCCCTAAAGTGTCTCCAAACTTGCTAATGAATATGCTCACACCTGTAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAAGTGTCTCCAAACTTGCTAATGAATATGCTCACACCTGTAAC  1043

seq1  TCCCAAAGAGAATTC  1063
      |||||||||||||||
seq2  TCCCAAAGAGAATTC  1058