BAC Information

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BAC

Clone NameB6Ng01-139K08
Chromosome3 (Build37)
Map Location 75,410,830 - 75,554,223
singlet/doubletdoublet
Overlap geneSerpini1
Upstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49, Pdcd10
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139K08.bB6Ng01-139K08.g
ACCDH938578DH938579
length1,1661,134
definitionDH938578|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K08, 5' end.DH938579|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,410,830 - 75,411,993)(75,553,062 - 75,554,223)
sequence
gaattcttccacctttcctaccagatgttctataacatctatctactgtt
actccagtactgtagcccttgtagcttttgcatcagagcatttgattctc
tctgttgtaaataataaatctccaaaccaagtaaggttccacgtgagagc
tactggcttgagatgttggttgttaatactagtggccctgatcttttgta
gagtaatgttatcacagtagcatttgggcggcccctatgtgatttctcaa
ggagctacccttgttctgactgcttccagtggccagctgtcacattatac
cagtgttggtgacactaccactttatcagactggaaaggtggcttcacat
tcaatgtggaaacactttatcaaaaagaataaaaaatgaaaatgagctac
tatcctttggctcagattgaattaatgcttagcgtttagaaaccccagct
tccctggctgtttcttgtgctatagcactgcataccttcatgtattatac
catactaattcagtaaaccttgatttgtcacttccttcgtgtaaggcatt
taatgctgcttctcatcaggctagtgaacacaaagaagagtgctctccac
tgatgctctcaaaaccctaaacaggatgctgcatgtatggaatctatgca
cgcagagaaggaaattgctgaaattctaactgaaaaaccaagaagccatg
catgagggtgtagcttcaggtcagaggctgagtcatggttagaattgcag
cctgggggactctactaaggtagttccagaaagggctgcccaagccagaa
aaaagggaggtacttctgggatttggatttcaaagggagtctggcaaatc
agcaaggagcatgaaggagattattgtgtacaaatttatatatgcaaggt
cacagtgcacagattacatacaagactaactacttgggggtgttgcccta
caggcctgagaagggcttctgaggttttgtaaaagcagaaaataatttga
tgagacagcttgtttgcagactgccacccggttagattgaatagaggtag
taatagagaattcgtgtactcattgctttagtcctgggccatgatcaaaa
gagacagtaactgtccggttgcctttgagcaagccatgcaggaggatgca
tggatatcaatatgga
gaattcttaatctgatatttaagaatggttaatttctcaagtgacaaatg
aaatgtaccaggtttaaattcagaatttattactactctcaaataattct
ccattaaattcttagcactaaatccataaattgagcatataatactttat
taaccaactcttctagaaaactgacttttagagacattctaaattctttc
cattaacccaaagcctaggatcacaacaggcaagcctgagattgtttata
ttgttatgagataatatttacacatgatcttagccaaaaggctgagaagc
gatgatgagagaatatttcattgtgaaaaactgtacaactatatttgttt
atatcctatgctttagtctgagttaaatttcatcctgtttatttttgcta
catatattagcagctgagctggattttaattttatgagaacaattttttt
attgttataaattttacatgctcccattgccacatctctatgcctagctt
aataaacatcagtgcctcccaaatctatatgcaataaaaacaagaaaaca
aagaagaaccttctctatgaagaaaaagcttttaaattgcagaagtcacc
agtacattcactgatagttattaaagcaaaaggtgtgctcaagtacttag
gtcaagggagatagaaatacttctatatcctctctaaaaatcatatttag
aaactggtgacctttgttgtcctaggacacagagtcctgcttgggttttc
accctgtccttcctatagatagttacaattttggaaatgtaaccaggttc
cagagaagagtaatactgatagacatatgataggtatcagtcctctgata
aaagataaaaaaactgtgtaaccccaaatgaaggggactcctttgggaaa
gaattatgggataacagttgtgcagacatgtgactggaaaaatagcaaat
gctagaaaacgattgtgttcttcttcacttcctccatttcagatatcctc
catctgtctttctcatcttgcccctcattcttgatccctttcctgcctcc
ttttcacatccttctctttgtctcaattcagtatgaagataattgtatct
cggggtccttttttccattgtctttaatattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75410830_75411993
seq2: B6Ng01-139K08.b_45_1210

seq1  GAATTCTTCCACCTTTCCTACCAGATGTTCTATAACATCTATCTACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCACCTTTCCTACCAGATGTTCTATAACATCTATCTACTGTT  50

seq1  ACTCCAGTACTGTAGCCCTTGTAGCTTTTGCATCAGAGCATTTGATTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTACTGTAGCCCTTGTAGCTTTTGCATCAGAGCATTTGATTCTC  100

seq1  TCTGTTGTAAATAATAAATCTCCAAACCAAGTAAGGTTCCACGTGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTAAATAATAAATCTCCAAACCAAGTAAGGTTCCACGTGAGAGC  150

seq1  TACTGGCTTGAGATGTTGGTTGTTAATACTAGTGGCCCTGATCTTTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTTGAGATGTTGGTTGTTAATACTAGTGGCCCTGATCTTTTGTA  200

seq1  GAGTAATGTTATCACAGTAGCATTTGGGCGGCCCCTATGTGATTTCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATGTTATCACAGTAGCATTTGGGCGGCCCCTATGTGATTTCTCAA  250

seq1  GGAGCTACCCTTGTTCTGACTGCTTCCAGTGGCCAGCTGTCACATTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTACCCTTGTTCTGACTGCTTCCAGTGGCCAGCTGTCACATTATAC  300

seq1  CAGTGTTGGTGACACTACCACTTTATCAGACTGGAAAGGTGGCTTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGGTGACACTACCACTTTATCAGACTGGAAAGGTGGCTTCACAT  350

seq1  TCAATGTGGAAACACTTTATCAAAAAGAATAAAAAATGAAAATGAGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGGAAACACTTTATCAAAAAGAATAAAAAATGAAAATGAGCTAC  400

seq1  TATCCTTTGGCTCAGATTGAATTAATGCTTAGCGTTTAGAAACCCCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTTGGCTCAGATTGAATTAATGCTTAGCGTTTAGAAACCCCAGCT  450

seq1  TCCCTGGCTGTTTCTTGTGCTATAGCACTGCATACCTTCATGTATTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCTGTTTCTTGTGCTATAGCACTGCATACCTTCATGTATTATAC  500

seq1  CATACTAATTCAGTAAACCTTGATTTGTCACTTCCTTCGTGTAAGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAATTCAGTAAACCTTGATTTGTCACTTCCTTCGTGTAAGGCATT  550

seq1  TAATGCTGCTTCTCATCAGGCTAGTGAACACAAAGAAGAGTGCTCTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGCTTCTCATCAGGCTAGTGAACACAAAGAAGAGTGCTCTCCAC  600

seq1  TGATGCTCTCAAAACCCTAAACAGGATGCTGCATGTATGGAATCTATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCTCAAAACCCTAAACAGGATGCTGCATGTATGGAATCTATGCA  650

seq1  CGCAGAGAAGGAAATTGCTGAAATTCTAACTGAAAAACCAAGAAGCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAGAAGGAAATTGCTGAAATTCTAACTGAAAAACCAAGAAGCCATG  700

seq1  CATGAGGGTGTAGCTTCAGGTCAGAGGCTGAGTCATGGTTAGAATTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGGTGTAGCTTCAGGTCAGAGGCTGAGTCATGGTTAGAATTGCAG  750

seq1  CCTGGGGGACTCTACTAAGGTAGTTCCAGAAAGGGCTGCCCAAGCCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGACTCTACTAAGGTAGTTCCAGAAAGGGCTGCCCAAGCCAGAA  800

seq1  AAAAGGGAGGTACTTCTGGGATTTGGATTTCCAAAGGGAGTCTGGCAAAT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAAGGGAGGTACTTCTGGGATTTGGATTT-CAAAGGGAGTCTGGCAAAT  849

seq1  CAGCAGGGAGCATGAAGGAGATTATTGTGTACAAATTTATATATGCAAGG  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGAGCATGAAGGAGATTATTGTGTACAAATTTATATATGCAAGG  899

seq1  TCACAGTGCAACAGATTACATACAAGACTAACTACTT-GGGGTGTTGCCC  949
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  TCACAGTGC-ACAGATTACATACAAGACTAACTACTTGGGGGTGTTGCCC  948

seq1  TACAGGCCTGAG-AGGGCTTCTGAGGTTTTGTAAAAGCAAGAAAATAATT  998
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TACAGGCCTGAGAAGGGCTTCTGAGGTTTTGTAAAAGC-AGAAAATAATT  997

seq1  TGATGAGACAGC-TGTTTGCAGACTGCCACCCGGTTAGATTGAATAGA-G  1046
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  TGATGAGACAGCTTGTTTGCAGACTGCCACCCGGTTAGATTGAATAGAGG  1047

seq1  TAGTAAATAGAGAA-TCGTGTACTCATTGCTTTAGTTCTGGGGCATGGAT  1095
      |||| ||||||||| ||||||||||||||||||||| ||||| ||| |||
seq2  TAGT-AATAGAGAATTCGTGTACTCATTGCTTTAGTCCTGGGCCAT-GAT  1095

seq1  CAAA--AGACAGTAACTGCACGTGTGGCCTTTGAGCAAGCATAGCAAGA-  1142
      ||||  ||||||||||||  || || ||||||||||||||   ||| || 
seq2  CAAAAGAGACAGTAACTGTCCG-GTTGCCTTTGAGCAAGCCATGCAGGAG  1144

seq1  GATGCATGGGATA-CAATATGGA  1164
      ||||||| ||||| |||||||||
seq2  GATGCAT-GGATATCAATATGGA  1166

seq1: chr3_75553062_75554223
seq2: B6Ng01-139K08.g_68_1201 (reverse)

seq1  AACAATATTTAAAGACAATGTAAAAAAAAGTGACACCGAGATACAATTTA  50
      ||||||| |||||||||||| ||||||    ||| ||||||||||| |||
seq2  AACAATA-TTAAAGACAATGGAAAAAA---GGACCCCGAGATACAA-TTA  45

seq1  TCTTCCATTACTGAATATTTGAAGGACAAAAGGAGGAAGAGATGTGAAAA  100
      |||||   |||||||   ||||  ||||||  || |||| ||||||||||
seq2  TCTTC--ATACTGAA---TTGA--GACAAA--GA-GAAG-GATGTGAAAA  84

seq1  GGGAGGCAGGGAAAGGGATCCAAAGGAATGGAGGGGGCAAGATGAGAAAA  150
       ||||||| |||||||||||   | |||||   |||||||||||||||| 
seq2  -GGAGGCA-GGAAAGGGATC---AAGAATG--AGGGGCAAGATGAGAAA-  126

seq1  GGACAGATGGAGGATATCTGAAAATGGGAGGGAAGTGAAGAAGGAACACA  200
       ||||||||||||||||||| ||||||   |||||||||||| |||||||
seq2  -GACAGATGGAGGATATCTG-AAATGG--AGGAAGTGAAGAA-GAACACA  171

seq1  TTCGGTTTTCTTAGC-TTTGCTATTTTTCCAGTCACCTTGTCTGCAC-AC  248
       || |||||| |||| ||||||||||||||||||| | ||||||||| ||
seq2  ATC-GTTTTC-TAGCATTTGCTATTTTTCCAGTCA-CATGTCTGCACAAC  218

seq1  TGTTAT-CCATAATTCTTTCCCAAAGGAGTCCCCTTCATTTGGGGTTACA  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCCCATAATTCTTTCCCAAAGGAGTCCCCTTCATTTGGGGTTACA  268

seq1  CAG-TTTTTTATCTTTTATCAGAGGACTGATACCTATCATATGTCTATCA  346
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTTTATCTTTTATCAGAGGACTGATACCTATCATATGTCTATCA  318

seq1  GTATTACTCTTCTCTGGAACCTGGTTACATTTCCAAAATTGTAACTATCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTCTTCTCTGGAACCTGGTTACATTTCCAAAATTGTAACTATCT  368

seq1  ATAGGAAGGACAGGGTGAAAACCCAAGCAGGACTCTGTGTCCTAGGACAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGGACAGGGTGAAAACCCAAGCAGGACTCTGTGTCCTAGGACAA  418

seq1  CAAAGGTCACCAGTTTCTAAATATGATTTTTAGAGAGGATATAGAAGTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTCACCAGTTTCTAAATATGATTTTTAGAGAGGATATAGAAGTAT  468

seq1  TTCTATCTCCCTTGACCTAAGTACTTGAGCACACCTTTTGCTTTAATAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTCCCTTGACCTAAGTACTTGAGCACACCTTTTGCTTTAATAAC  518

seq1  TATCAGTGAATGTACTGGTGACTTCTGCAATTTAAAAGCTTTTTCTTCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGAATGTACTGGTGACTTCTGCAATTTAAAAGCTTTTTCTTCAT  568

seq1  AGAGAAGGTTCTTCTTTGTTTTCTTGTTTTTATTGCATATAGATTTGGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGTTCTTCTTTGTTTTCTTGTTTTTATTGCATATAGATTTGGGA  618

seq1  GGCACTGATGTTTATTAAGCTAGGCATAGAGATGTGGCAATGGGAGCATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGATGTTTATTAAGCTAGGCATAGAGATGTGGCAATGGGAGCATG  668

seq1  TAAAATTTATAACAATAAAAAAATTGTTCTCATAAAATTAAAATCCAGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTATAACAATAAAAAAATTGTTCTCATAAAATTAAAATCCAGCT  718

seq1  CAGCTGCTAATATATGTAGCAAAAATAAACAGGATGAAATTTAACTCAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTAATATATGTAGCAAAAATAAACAGGATGAAATTTAACTCAGA  768

seq1  CTAAAGCATAGGATATAAACAAATATAGTTGTACAGTTTTTCACAATGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCATAGGATATAAACAAATATAGTTGTACAGTTTTTCACAATGAA  818

seq1  ATATTCTCTCATCATCGCTTCTCAGCCTTTTGGCTAAGATCATGTGTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCTCATCATCGCTTCTCAGCCTTTTGGCTAAGATCATGTGTAAA  868

seq1  TATTATCTCATAACAATATAAACAATCTCAGGCTTGCCTGTTGTGATCCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTCATAACAATATAAACAATCTCAGGCTTGCCTGTTGTGATCCT  918

seq1  AGGCTTTGGGTTAATGGAAAGAATTTAGAATGTCTCTAAAAGTCAGTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGGGTTAATGGAAAGAATTTAGAATGTCTCTAAAAGTCAGTTTT  968

seq1  CTAGAAGAGTTGGTTAATAAAGTATTATATGCTCAATTTATGGATTTAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGAGTTGGTTAATAAAGTATTATATGCTCAATTTATGGATTTAGT  1018

seq1  GCTAAGAATTTAATGGAGAATTATTTGAGAGTAGTAATAAATTCTGAATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAATTTAATGGAGAATTATTTGAGAGTAGTAATAAATTCTGAATT  1068

seq1  TAAACCTGGTACATTTCATTTGTCACTTGAGAAATTAACCATTCTTAAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGGTACATTTCATTTGTCACTTGAGAAATTAACCATTCTTAAAT  1118

seq1  ATCAGATTAAGAATTC  1162
      ||||||||||||||||
seq2  ATCAGATTAAGAATTC  1134