BAC Information

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BAC

Clone NameB6Ng01-139L19
Chromosome3 (Build37)15 (Build37)
Map Location 99,170,100 - 99,170,7249,609,911 - 9,611,042
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
Downstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2, LOC195514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139L19.bB6Ng01-139L19.g
ACCDH938648DH938649
length9801,119
definitionDH938648|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L19, 5' end.DH938649|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,170,100 - 99,170,724)(9,609,911 - 9,611,042)
sequence
gaattctttccagtcggggccagcccctccatcttctgcttgaacctggc
caagggcatcgagggtcccagaggactccccatgccgcaggactcctagc
acacccaggacctcatgatcactggagagcacgtgggcaacagaagcaac
agaacttcttgggcagggtccctttgggccttcatcctcagccaggaggt
ggagctgaaacccagacccctgggcaccttccttgccagaggagagtcag
cctacagggaaggctctgaccccaggactcaagaggtggatcagagctcc
agacttctggacacctgtcctgcaagaggagagcttgcctgcagagagtg
ctctgaccactgggactcaggtgagagttggactcccaggagtgctgacc
gatgctaacagaatcaaggaggatcaagctccagccagagacagcttgaa
cattaacaccagagattaccagatggcaaaaggcaaatgtaagaatctta
ctatcagaaaccaagaacactgggcatcatcaggacccagtatgcccacc
acagagagtactggatatcccaacacaactgaaaagcaagactcagattt
aaaatcatatgtcatgatggtggtagattttaagaagaatattaataact
cacttaaagaaatacagttagaagctcttaaagaattacaggaaaacact
gctaaacaggtagaagtccttaaagaggaaacacaaaattcccttaaaga
actacaggaaacaaccaaacaggagatggaattgaacaaaaccatccaag
atcaaaacatggaagtagaaacaatgaagaaaatccaaagggagacaact
cgagagatagaaacccaaggagagaaatcaggaaccatagaaagaaaacc
caaagtgaggcaatgctggagatagaaaccctaggaaagaaatctggaac
catagatgcgagcatcagcaacagaatgca
gaattctcttacctctcagtttgcttaagtcctgtgtttcgccagaaggg
ctaccttaatttaatatcagaatacccctttctctacagaaaatactgct
tttactctacttttcaattttcctgaacctgattatctttttccatgttt
ttcaatttatctgttagtatttatggccaattgcctgcccatgtttataa
gaatgtggacttgatcagagcagagaagtccaccagttgggctgttgaca
tgtctacataatgcggcgtgtaggaaaagcacgtgcttccaaactgatcc
gagtatagatgaggggctttcaccaaaccgcaaatgtggctgcataaaca
aagctaacctttctgctaattcatatttcaaatgaatagaataaaagttc
taaccctctacttactgcttttctcaactcacttctctctaaataactca
tccagcacgcacattgttggttgcgagtccaacatgtctttatatttagt
gagttttaaaagctgaatgaataacttgtttgggatgatgatattcattg
taaaataaatcaattataataaaaagtaaacgaagcacacatgattaatt
ctgtcattacttccctctatatttaaccagtactgtttgtgaaagtatta
gattgctttagaaataatatcaagtgaattaaaaaatcatattatacctt
tctaaactagtaaaatggcatagtgatttctactgttttagacggaaata
tattaagaacataaacaatatgatggaaacttttgtaatcactctcttat
caagcataactgagaatcaatagaagatcattgtttagtttgtaacatct
gaatacatattgaaaaatacaaattaggacacattttaatatatgcgtag
acaaaattagttatatacttactgataaaagctatcacttgatctgaact
gttcaaattcattaatcttgacatctggtaacaggaaagtagtagtcaga
gtcccagcactcacaactacatgtgattgctagcgctgcatgtcagtgtg
tgccttctctagcctggggaataaggatgaactcacgctgtctgataact
tagcaagaataatatacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99170100_99170724
seq2: B6Ng01-139L19.b_58_679

seq1  GGGGCCAGCCCCACCATCTTCTGCGTGAACCTGGCAGAGGGCATCGA-GG  49
      |||||||||||| ||||||||||| ||||||||||  |||||||||| ||
seq2  GGGGCCAGCCCCTCCATCTTCTGCTTGAACCTGGCCAAGGGCATCGAGGG  50

seq1  CCTCAGAGGACTCTCCATGACACAGGATCCCTAGCACACCCAGGACCTCG  99
       | |||||||||| ||||| | |||||  |||||||||||||||||||| 
seq2  TCCCAGAGGACTCCCCATGCCGCAGGACTCCTAGCACACCCAGGACCTCA  100

seq1  TGATCACTGGAGAGCCCGTGGGCAACAGAAGCAACAGAGCTTCTTGGACA  149
      ||||||||||||||| |||||||||||||||||||||| |||||||| ||
seq2  TGATCACTGGAGAGCACGTGGGCAACAGAAGCAACAGAACTTCTTGGGCA  150

seq1  GGGTCCCATCTGGCCTTCATCCTCAACCAGGAGGCAGAGCTGAGACCCAG  199
      ||||||| |  |||||||||||||| ||||||||  ||||||| ||||||
seq2  GGGTCCCTTTGGGCCTTCATCCTCAGCCAGGAGGTGGAGCTGAAACCCAG  200

seq1  ACCCCTGGGCACCTTCCTTGCCAGAGAAGAGTCGACCTACAGGGAGGGTT  249
      |||||||||||||||||||||||||| ||||||  |||||||||| || |
seq2  ACCCCTGGGCACCTTCCTTGCCAGAGGAGAGTCAGCCTACAGGGAAGGCT  250

seq1  CTGACCCCAGGATTCAGGAGGTGTATCAGAGCTCCAGACTTCTGGACACC  299
      |||||||||||| ||| |||||| ||||||||||||||||||||||||||
seq2  CTGACCCCAGGACTCAAGAGGTGGATCAGAGCTCCAGACTTCTGGACACC  300

seq1  TGCCCTGCAAGAGGAGAGCATGCCTGCAGGGAGTGCTCTGACCACTGGGA  349
      || |||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TGTCCTGCAAGAGGAGAGCTTGCCTGCAGAGAGTGCTCTGACCACTGGGA  350

seq1  CTTAGGTGAGATTTGGACTCCCAGGAGTGATGACAGAGGCTAACAGAATC  399
      || |||||||| ||||||||||||||||| |||| || ||||||||||||
seq2  CTCAGGTGAGAGTTGGACTCCCAGGAGTGCTGACCGATGCTAACAGAATC  400

seq1  ACAGGAGGATCAAGCTCCAGCCAGAGACAGCTAGAACATTAACACCAGAG  449
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  A-AGGAGGATCAAGCTCCAGCCAGAGACAGCTTGAACATTAACACCAGAG  449

seq1  ATTACCAGATGGTGAAAGGCAAATGTAAGAATCTTACTAACAGAAACCAA  499
      ||||||||||||  ||||||||||||||||||||||||| ||||||||||
seq2  ATTACCAGATGGCAAAAGGCAAATGTAAGAATCTTACTATCAGAAACCAA  499

seq1  GAACACTGGGCATCATCAGAATTCAGTACGCCCACCACGGCGAGACCTGG  549
      ||||||||||||||||||| |  ||||| ||||||||| | |||  ||||
seq2  GAACACTGGGCATCATCAGGACCCAGTATGCCCACCACAGAGAGTACTGG  549

seq1  ATAACCCAACACACCCGAAAAGCAAGATTCGGATTTAAAATCACATCTCA  599
      ||| ||||||||| | ||||||||||| || |||||||||||| || |||
seq2  ATATCCCAACACAACTGAAAAGCAAGACTCAGATTTAAAATCATATGTCA  599

seq1  TGATGGTGGTAGAAGATTTTAAGAAG  625
      ||||||||||   |||||||||||||
seq2  TGATGGTGGT---AGATTTTAAGAAG  622

seq1: chr15_9609911_9611042
seq2: B6Ng01-139L19.g_68_1186

seq1  GAATTCTCTTACCTCTCAGTTTGCTTAAGTCCTGTGTTTCGCCAGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACCTCTCAGTTTGCTTAAGTCCTGTGTTTCGCCAGAAGGG  50

seq1  CTACCTTAATTTAATATCAGAATACCCCTTTCTCTACAGAAAATACTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTAATTTAATATCAGAATACCCCTTTCTCTACAGAAAATACTGCT  100

seq1  TTTACTCTACTTTTCAATTTTCCTGAACCTGATTATCTTTTTCCATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTACTTTTCAATTTTCCTGAACCTGATTATCTTTTTCCATGTTT  150

seq1  TTCAATTTATCTGTTAGTATTTATGGCCAATTGCCTGCCCATGTTTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTATCTGTTAGTATTTATGGCCAATTGCCTGCCCATGTTTATAA  200

seq1  GAATGTGGACTTGATCAGAGCAGAGAAGTCCACCAGTTGGGCTGTTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGACTTGATCAGAGCAGAGAAGTCCACCAGTTGGGCTGTTGACA  250

seq1  TGTCTACATAATGCGGCGTGTAGGAAAAGCACGTGCTTCCAAACTGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACATAATGCGGCGTGTAGGAAAAGCACGTGCTTCCAAACTGATCC  300

seq1  GAGTATAGATGAGGGGCTTTCACCAAACCGCAAATGTGGCTGCATAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAGATGAGGGGCTTTCACCAAACCGCAAATGTGGCTGCATAAACA  350

seq1  AAGCTAACCTTTCTGCTAATTCATATTTCAAATGAATAGAATAAAAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACCTTTCTGCTAATTCATATTTCAAATGAATAGAATAAAAGTTC  400

seq1  TAACCCTCTACTTACTGCTTTTCTCAACTCACTTCTCTCTAAATAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTCTACTTACTGCTTTTCTCAACTCACTTCTCTCTAAATAACTCA  450

seq1  TCCAGCACGCACATTGTTGGTTGCGAGTCCAACATGTCTTTATATTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACGCACATTGTTGGTTGCGAGTCCAACATGTCTTTATATTTAGT  500

seq1  GAGTTTTAAAAGCTGAATGAATAACTTGTTTGGGATGATGATATTCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTAAAAGCTGAATGAATAACTTGTTTGGGATGATGATATTCATTG  550

seq1  TAAAATAAATCAATTATAATAAAAAGTAAACGAAGCACACATGATTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATCAATTATAATAAAAAGTAAACGAAGCACACATGATTAATT  600

seq1  CTGTCATTACTTCCCTCTATATTTAACCAGTACTGTTTGTGAAAGTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTACTTCCCTCTATATTTAACCAGTACTGTTTGTGAAAGTATTA  650

seq1  GATTGCTTTAGAAATAATATCAAGTGAATTAAAAAATCATATTATACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTTAGAAATAATATCAAGTGAATTAAAAAATCATATTATACCTT  700

seq1  TCTAAACTAGTAAAATGGCATAGTGATTTCTACTGTTTTAGACGGAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTAGTAAAATGGCATAGTGATTTCTACTGTTTTAGACGGAAATA  750

seq1  TATTAAGAACATAAACAATATGATGGAAACTTTTGTAATCACTCTCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAACATAAACAATATGATGGAAACTTTTGTAATCACTCTCTTAT  800

seq1  CAAGCATAACTGAGAATCAAATAGAAGATCATTGTTTAGTTTGTAACATC  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAGCATAACTGAGAATC-AATAGAAGATCATTGTTTAGTTTGTAACATC  849

seq1  TGAATACATATTGAAAAAATACAAATTAGGACACATTTTAATATATGCGT  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAATACATATTG-AAAAATACAAATTAGGACACATTTTAATATATGCGT  898

seq1  AGACAAAATTAGGTTATAATACTTACTGATAAAAAGCTATCACTTGATCT  950
      ||||||||||| ||||| |||||||||||| |||||||||||||||||||
seq2  AGACAAAATTA-GTTAT-ATACTTACTGAT-AAAAGCTATCACTTGATCT  945

seq1  GAACTGTTCAAATTCATTAATCTTGACACCTGGTAACAGGAAAGTAGTAA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  GAACTGTTCAAATTCATTAATCTTGACATCTGGTAACAGGAAAGTAGTA-  994

seq1  GGTCAGAGTCCCAGCACTCACAACTACATGTGAATTGCTAGCGCTGCATG  1050
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  -GTCAGAGTCCCAGCACTCACAACTACATGTG-ATTGCTAGCGCTGCATG  1042

seq1  TCAGTGTGTGGCCCTCTCTAG-CTGGGGAATAAGGGTATGACACTCAGCC  1099
      ||||||||| ||| ||||||| |||||||||||||  |||| ||||| | 
seq2  TCAGTGTGT-GCCTTCTCTAGCCTGGGGAATAAGG--ATGA-ACTCA-CG  1087

seq1  ATGTCTGATACACTTAGCAAGAATATAATACAA  1132
       ||||||||| ||||||||||||||  ||||||
seq2  CTGTCTGATA-ACTTAGCAAGAATAATATACAA  1119