BAC Information

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BAC

Clone NameB6Ng01-139L21
Chromosome3 (Build37)
Map Location 60,823,779 - 60,943,188
singlet/doubletdoublet
Overlap genenone
Upstream geneAadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneRap2b, LOC666891, LOC669910, LOC676965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139L21.bB6Ng01-139L21.g
ACCDH938652DH938653
length1,1121,092
definitionDH938652|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L21, 5' end.DH938653|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,942,068 - 60,943,188)(60,823,779 - 60,824,891)
sequence
gaattctgtcacctggagggtggatgatttgttacattttttcagatttt
caaagaactggtcttgaacccataacctgtactacctgactgtaaagatg
catggtggcttccaggttcagatttgctttgaatgtgttttatgaatggc
aagtttgggaacgactgagtttttatttatttattttctttattccaggt
tttacagaaaagtttgccaacacatcaactcttctttgaaactatctaac
tagaaatattgacagaaccatagattgaggtctcactctcagagagtgtg
aactccatgttttaaattttgtttggtttatagctgttgttattttgttt
tttgttttttttttttattctctcaagtattataccctgatggcagtttc
ccctccctcctctcctcccagttcctcttacccacctcctctccgcctcc
atttcccttcagaaaagcactggctccagggatatcgaacacacatggca
ttccagtttgcaataacacaagatacctctcctctcatattcaggccgag
tgaggcaacccagtaggaggacaagggtcccaaaagcaaggaaaagagtc
agcaacagcctatgcttgcctttttaggagtcccacaagaatatcaagcc
acataatcataatatacatgcagaggacacatgtcagaccatgacagagc
tttattttctagttttacttgtgggattggaaactgttttctattgtcta
catgaaaactcaagtccttctttctcttagttcatctgtgtttatcttga
cacattaaaaaaattggccttttcagaaatattgcttggttatgttttta
cattgtacataaaatgttatgagctctagctcttatgtcagcattgctcc
aggagaggatactgcctttatcttcaccacggataatctatctaatatta
atcttcaaggagagtgttcttactgacttccctggcttcaaatacagttt
gtcaagatcctgtgcccaatgtagccactgctctatgtcagtgactgctt
gtcagttttatacctcatacaatcagaggcaaatgagaaaaagcctcctc
ccaatgcctgtg
gaattctagagagcttcctaaagttaagcattgagatcccctgacaaatg
caactctggtccattggcaatcaaagcccaaagcaataagcttctcactt
aagaaacaacaactctcaggcttttttatccttaaacctctagttcttag
ggcctagcaacaaaagcctctatgccttcaaacccaatggcacccatggt
ttcaggctgccaaaagacaggtttgttatatattcaagagttttagctgt
ggagagcaaaaggtttcaccaactaaacattaataatactctctaaagtc
cattataaaatattccccatctggatcagttattcttgatagcaggtagc
ctgtatagacactgacaggtttgtaaactatctgtcaccttattactggg
caataagatggcactctcagcgttggacaccaaatgcctagaatgactaa
agaaaggttagttaggctttgctgtccttctcaacactggattccccttg
actcttgtttctgaactgacgaggaaaaaaagtaatgggatgacagtgca
aaacctccggtataaaagaagccattcaccatatgggcagtacaaaatag
gaacataacctatgaattaagctgaaacaggaaaccatattacaaaggca
gaatatgccttatcatacaaatatttaacatttggtggggacaactgctt
atagtgtttaaaactcaaatcagtagacatgaaatataaacccaaatttt
agccaagagaaattgtgtattaccatgtcctctatggcgtggttcagaat
cctgactgactatgcatagcaaaggaattaaaaaagaagagacagatatt
gaaaagttgtatcagtgtacattctgatggagtggtacgtactgaccctg
catttctaacctcacagtgtttaggagtaaagcatagagggagcgattat
cctagagaggtatcttgtagttagcagttctgagatcatcagaggagagt
gattttatatataaatatattgattatatgatatatatatatatatatat
tatactacggtcactttgaaccccaaaaagctttgggtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60942068_60943188
seq2: B6Ng01-139L21.b_49_1160 (reverse)

seq1  CACAGGCCAATTTGGGAGAGGCTTCTTCTCATGTGCCTCTGATTTGTATG  50
      |||||||  ||| ||  ||||||| ||||||| ||||||||| |||||||
seq2  CACAGGC--ATTGGGAGGAGGCTTTTTCTCATTTGCCTCTGA-TTGTATG  47

seq1  AAGTTATAAAAACTGACCAGCAGTCACTGACATAGAGCAAGTGGCTACAT  100
       || ||| ||||||||| |||||||||||||||||||| |||||||||||
seq2  -AGGTAT-AAAACTGACAAGCAGTCACTGACATAGAGC-AGTGGCTACAT  94

seq1  GGGGCACAAGGATCTTGACAAACTGTATATGAAGCCAGGGGAGTCAGTAA  150
       |||||| |||||||||||||||||||| ||||||||||| |||||||||
seq2  TGGGCAC-AGGATCTTGACAAACTGTATTTGAAGCCAGGGAAGTCAGTAA  143

seq1  GAACACTCTCCTTGAAGATTAATAATTAGATAGATTATCCGTGGTGAAGA  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAACACTCTCCTTGAAGATTAAT-ATTAGATAGATTATCCGTGGTGAAGA  192

seq1  TAAAGGCAGTATCCTCTCCTGGAGCAATGCTGAACATAAGAGCTAGAGCT  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAAGGCAGTATCCTCTCCTGGAGCAATGCTG-ACATAAGAGCTAGAGCT  241

seq1  CATAACATTTTATGTACAATGTAAAAACATAACCAAGCAATATTTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATTTTATGTACAATGTAAAAACATAACCAAGCAATATTTCTGAA  291

seq1  AAGGCCAATTTTTTTAATGTGTCAAGATAAACACAGATGAACTAAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAATTTTTTTAATGTGTCAAGATAAACACAGATGAACTAAGAGAA  341

seq1  AGAAGGACTTGAGTTTTCATGTAGACAATAGAAAACAGTTTCCAATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACTTGAGTTTTCATGTAGACAATAGAAAACAGTTTCCAATCCCA  391

seq1  CAAGTAAAACTAGAAAATAAAGCTCTGTCATGGTCTGACATGTGTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAACTAGAAAATAAAGCTCTGTCATGGTCTGACATGTGTCCTCT  441

seq1  GCATGTATATTATGATTATGTGGCTTGATATTCTTGTGGGACTCCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATATTATGATTATGTGGCTTGATATTCTTGTGGGACTCCTAAAA  491

seq1  AGGCAAGCATAGGCTGTTGCTGACTCTTTTCCTTGCTTTTGGGACCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCATAGGCTGTTGCTGACTCTTTTCCTTGCTTTTGGGACCCTTG  541

seq1  TCCTCCTACTGGGTTGCCTCACTCGGCCTGAATATGAGAGGAGAGGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTACTGGGTTGCCTCACTCGGCCTGAATATGAGAGGAGAGGTATC  591

seq1  TTGTGTTATTGCAAACTGGAATGCCATGTGTGTTCGATATCCCTGGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTATTGCAAACTGGAATGCCATGTGTGTTCGATATCCCTGGAGCC  641

seq1  AGTGCTTTTCTGAAGGGAAATGGAGGCGGAGAGGAGGTGGGTAAGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTCTGAAGGGAAATGGAGGCGGAGAGGAGGTGGGTAAGAGGAA  691

seq1  CTGGGAGGAGAGGAGGGAGGGGAAACTGCCATCAGGGTATAATACTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGAGAGGAGGGAGGGGAAACTGCCATCAGGGTATAATACTTGAG  741

seq1  AGAATAAAAAAAAAAAACAAAAAACAAAATAACAACAGCTATAAACCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAAAAAAAAACAAAAAACAAAATAACAACAGCTATAAACCAAA  791

seq1  CAAAATTTAAAACATGGAGTTCACACTCTCTGAGAGTGAGACCTCAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTAAAACATGGAGTTCACACTCTCTGAGAGTGAGACCTCAATCT  841

seq1  ATGGTTCTGTCAATATTTCTAGTTAGATAGTTTCAAAGAAGAGTTGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTGTCAATATTTCTAGTTAGATAGTTTCAAAGAAGAGTTGATGT  891

seq1  GTTGGCAAACTTTTCTGTAAAACCTGGAATAAAGAAAATAAATAAATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAAACTTTTCTGTAAAACCTGGAATAAAGAAAATAAATAAATAAA  941

seq1  AACTCAGTCGTTCCCAAACTTGCCATTCATAAAACACATTCAAAGCAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTCGTTCCCAAACTTGCCATTCATAAAACACATTCAAAGCAAAT  991

seq1  CTGAACCTGGAAGCCACCATGCATCTTTACAGTCAGGTAGTACAGGTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTGGAAGCCACCATGCATCTTTACAGTCAGGTAGTACAGGTTAT  1041

seq1  GGGTTCAAGACCAGTTCTTTGAAAATCTGAAAAAATGTAACAAATCATCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAAGACCAGTTCTTTGAAAATCTGAAAAAATGTAACAAATCATCC  1091

seq1  ACCCTCCAGGTGACAGAATTC  1121
      |||||||||||||||||||||
seq2  ACCCTCCAGGTGACAGAATTC  1112

seq1: chr3_60823779_60824891
seq2: B6Ng01-139L21.g_70_1161

seq1  GAATTCTAGAGAGCTTCCTAAAGTTAAGCATTGAGATCCCCTGACAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGAGCTTCCTAAAGTTAAGCATTGAGATCCCCTGACAAATG  50

seq1  CAACTCTGGTCCATTGGCAATCAAAGCCCAAAGCAATAAGCTTCTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGGTCCATTGGCAATCAAAGCCCAAAGCAATAAGCTTCTCACTT  100

seq1  AAGAAACAACAACTCTCAGGCTTTTTTATCCTTAAACCTCTAGTTCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAACAACTCTCAGGCTTTTTTATCCTTAAACCTCTAGTTCTTAG  150

seq1  GGCCTAGCAACAAAAGCCTCTATGCCTTCAAACCCAATGGCACCCATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGCAACAAAAGCCTCTATGCCTTCAAACCCAATGGCACCCATGGT  200

seq1  TTCAGGCTGCCAAAAGACAGGTTTGTTATATATTCAAGAGTTTTAGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTGCCAAAAGACAGGTTTGTTATATATTCAAGAGTTTTAGCTGT  250

seq1  GGAGAGCAAAAGGTTTCACCAACTAAACATTAATAATACTCTCTAAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCAAAAGGTTTCACCAACTAAACATTAATAATACTCTCTAAAGTC  300

seq1  CATTATAAAATATTCCCCATCTGGATCAGTTATTCTTGATAGCAGGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAAAATATTCCCCATCTGGATCAGTTATTCTTGATAGCAGGTAGC  350

seq1  CTGTATAGACACTGACAGGTTTGTAAACTATCTGTCACCTTATTACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGACACTGACAGGTTTGTAAACTATCTGTCACCTTATTACTGGG  400

seq1  CAATAAGATGGCACTCTCAGCGTTGGACACCAAATGCCTAGAATGACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGATGGCACTCTCAGCGTTGGACACCAAATGCCTAGAATGACTAA  450

seq1  AGAAAGGTTAGTTAGGCTTTGCTGTCCTTCTCAACACTGGATTCCCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTTAGTTAGGCTTTGCTGTCCTTCTCAACACTGGATTCCCCTTG  500

seq1  ACTCTTGTTTCTGAACTGACGAGGAAAAAAAGTAATGGGATGACAGTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTTTCTGAACTGACGAGGAAAAAAAGTAATGGGATGACAGTGCA  550

seq1  AAACCTCCGGTATAAAAGAAGCCATTCACCATATGGGCAGTACAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCGGTATAAAAGAAGCCATTCACCATATGGGCAGTACAAAATAG  600

seq1  GAACATAACCTATGAATTAAGCTGAAACAGGAAACCATATTACAAAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAACCTATGAATTAAGCTGAAACAGGAAACCATATTACAAAGGCA  650

seq1  GAATATGCCTTATCATACAAATATTTAACATTTGGTGGGGACAACTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGCCTTATCATACAAATATTTAACATTTGGTGGGGACAACTGCTT  700

seq1  ATAGTGTTTAAAACTCAAATCAGTAGACATGAAATATAAACCCAAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTTAAAACTCAAATCAGTAGACATGAAATATAAACCCAAATTTT  750

seq1  AGCCAAGAGAAATTGTGTATTACCATGTCCTCTATGGCGTGGTTCAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAGAAATTGTGTATTACCATGTCCTCTATGGCGTGGTTCAGAAT  800

seq1  CCTGACTGACTATGCATAGCAAAGGAATTAAAAAAGAAGAGACAGATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGACTATGCATAGCAAAGGAATTAAAAAAGAAGAGACAGATATT  850

seq1  GAAAAGTTGTATCAGGTGTACATTCTGATGGAGTGGTACGTACTGACCCT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTGTATCA-GTGTACATTCTGATGGAGTGGTACGTACTGACCCT  899

seq1  GCAATTTCTAACCTCACAGTGTTTAGGAGGTAAAGCATAGAGGGAGCGAT  950
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GC-ATTTCTAACCTCACAGTGTTTAGGA-GTAAAGCATAGAGGGAGCGAT  947

seq1  TATCCCTAGAAGGAGGTATC-TGTAGGTTAGCAG-TCTGAGATTCACCAA  998
      ||| ||||||  |||||||| |||| |||||||| ||||||| ||| || 
seq2  TAT-CCTAGA--GAGGTATCTTGTA-GTTAGCAGTTCTGAGA-TCATCA-  991

seq1  GGAGGAGAGGTTGAATTTTATATATAAAATTATATATATATATAT-ATAT  1047
       ||||||||  || ||||||||||||||  |||||  || ||||| ||||
seq2  -GAGGAGAG--TG-ATTTTATATATAAA--TATATTGAT-TATATGATAT  1034

seq1  ATATATATATATATATATATACTACAGGTTCACATTTGGACCCCACAAAA  1097
      |||||||||||||||| ||||||||  | |||| |||| |||||   |||
seq2  ATATATATATATATAT-TATACTAC--GGTCAC-TTTGAACCCC---AAA  1077

seq1  AAGCTTTGGTTTCTCT  1113
      |||||||||  |||||
seq2  AAGCTTTGG-GTCTCT  1092