BAC Information

Click to search

BAC

Clone NameB6Ng01-139O17
Chromosome3 (Build37)
Map Location 142,593,878 - 142,805,530
singlet/doubletdoublet
Overlap geneLOC100040053, LOC100039883
Upstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139O17.bB6Ng01-139O17.g
ACCDH938782DH938783
length7171,075
definitionDH938782|Mus musculus domesticus DNA, BAC clone: B6Ng01-139O17, 5' end.DH938783|Mus musculus domesticus DNA, BAC clone: B6Ng01-139O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,593,878 - 142,594,594)(142,804,448 - 142,805,530)
sequence
gaattccaaacctgaacattaattgttgtctcaagactttaaaagcctcc
tgcacaggttacacaaataggtcatggacttcaaacagccgtgggcacct
cttacctatataataaaagcagcccacactggtttctacgctctggaggt
atcagcctgaggctcagtgacatgcacacatatgaactgcaaagagttgt
cactagcccaggggttaggggtcagtcccgagagctgaggctcttcagct
tatccactagtgaagaaattgttcaaaaagattctttctcttcttttttg
atactgtactctggctgggaccctggactctagtaatccttatcattagt
aaactcaaaccaatgcttgctttcaatctttctctgcctctttagggtcc
ttaaattgggatttaaacaaaaaacaaaacccaaaaaattgtatactaat
tcttttgttgaggtgagatactaaattgaaataaccaaatctcttagacg
gttacatgtaaagggagccagacaagggagagagggagagagagagagag
agagagagagagagagagagagagagagagagagagattagcaatcctgg
aggtaactcccaccatctcttttcaactgactttcttcgcatatgcataa
tgtgagaccccaggctctgtgagagacagtctgccctgtgtcactgtccc
ctcctggagacattgcc
gaattcctaggccagagtgctggaagctaacaccaacatttgtgctcatt
agagcactttctaattaagaatcgactgtcaagtgggccaaggtggacct
gttttgtcaacagagaaatgtacttctaagctagccttttattttgtcag
ggtaatcagtaggaaaagagggtaaatgttttaaacttttgaaaatattt
ttcatttcatattcacaatgatataaagagaatgcagaatttaaatgtgt
ggaaaacaatttattgatctaaactccttcaagaatcttagcctttgaag
tatagtgacaaagacatttcaattatttttttaattttctgaaacagaaa
tcactatgaagaaaatttagagtacttttaataataagaaaacatacaca
agttaaacctattgctactactaaactaaccgctgcttctatttctcttc
tcctatcccagctaattgtatatgagcacctttacggttagggggtgcaa
agtcaagaggggtgaaactcagacccactggtccctgctgcagcctcagt
gccccaaaacagaggctagcaaagacaagaaattttaactgaaaaataaa
tacagcatgtggtgatgtgtaagacagggttcctttgggtcgctgagagc
ttgctatagatggctttacttagctattcagagtgaactccattgtgaca
ttgaatatgttttgtgaattatatagtccttcgttaaactctccaaaatg
aaggaacttcatttaaatagccatctctgaatatcattcttaaaagaatc
atgtaaaacaacataggatttaaaagaaggattagattaaatcctggttc
gtctccttagtgggtgacctcctaccttagaatagtcatttaacatttcc
tgcgctcaatttcttcagacataaagttgagatataatgcatgaacgtag
tataagacgcagcagataccacattcaaagaatgttgtgcagtatttggc
acaaaaattaggggtgttcaataaatgccatggagaattctggtaacata
tgcctctaataaagctgcaaatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142593878_142594594
seq2: B6Ng01-139O17.b_47_763

seq1  GAATTCCAAACCTGAACATTAATTGTTGTCTCAAGACTTTAAAAGCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCTGAACATTAATTGTTGTCTCAAGACTTTAAAAGCCTCC  50

seq1  TGCACAGGTTACACAAATAGGTCATGGACTTCAAACAGCCGTGGGCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGTTACACAAATAGGTCATGGACTTCAAACAGCCGTGGGCACCT  100

seq1  CTTACCTATATAATAAAAGCAGCCCACACTGGTTTCTACGCTCTGGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTATATAATAAAAGCAGCCCACACTGGTTTCTACGCTCTGGAGGT  150

seq1  ATCAGCCTGAGGCTCAGTGACATGCACACATATGAACTGCAAAGAGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTGAGGCTCAGTGACATGCACACATATGAACTGCAAAGAGTTGT  200

seq1  CACTAGCCCAGGGGTTAGGGGTCAGTCCCGAGAGCTGAGGCTCTTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCCCAGGGGTTAGGGGTCAGTCCCGAGAGCTGAGGCTCTTCAGCT  250

seq1  TATCCACTAGTGAAGAAATTGTTCAAAAAGATTCTTTCTCTTCTTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTAGTGAAGAAATTGTTCAAAAAGATTCTTTCTCTTCTTTTTTG  300

seq1  ATACTGTACTCTGGCTGGGACCCTGGACTCTAGTAATCCTTATCATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTACTCTGGCTGGGACCCTGGACTCTAGTAATCCTTATCATTAGT  350

seq1  AAACTCAAACCAATGCTTGCTTTCAATCTTTCTCTGCCTCTTTAGGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAACCAATGCTTGCTTTCAATCTTTCTCTGCCTCTTTAGGGTCC  400

seq1  TTAAATTGGGATTTAAACAAAAAACAAAACCCAAAAAATTGTATACTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGGGATTTAAACAAAAAACAAAACCCAAAAAATTGTATACTAAT  450

seq1  TCTTTTGTTGAGGTGAGATACTAAATTGAAATAACCAAATCTCTTAGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTGAGGTGAGATACTAAATTGAAATAACCAAATCTCTTAGACG  500

seq1  GTTACATGTAAAGGGAGCCAGACAAGGGAGAGAGGGAGAGAGAGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGTAAAGGGAGCCAGACAAGGGAGAGAGGGAGAGAGAGAGAGAG  550

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTAGCAATCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTAGCAATCCTGG  600

seq1  AGGTAACTCCCACCATCTCTTTTCAACTGACTTTCTTCGCATATGCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACTCCCACCATCTCTTTTCAACTGACTTTCTTCGCATATGCATAA  650

seq1  TGTGAGACCCCAGGCTCTGTGAGAGACAGTCTGCCCTGTGTCACTGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACCCCAGGCTCTGTGAGAGACAGTCTGCCCTGTGTCACTGTCCC  700

seq1  CTCCTGGAGACATTGCC  717
      |||||||||||||||||
seq2  CTCCTGGAGACATTGCC  717

seq1: chr3_142804448_142805530
seq2: B6Ng01-139O17.g_67_1141 (reverse)

seq1  CCCATTTGCATGCTTTATTAGAGGCATTATGTTACCAGAATTCTCCATGG  50
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  CCCATTTGCA-GCTTTATTAGAGGCA-TATGTTACCAGAATTCTCCATGG  48

seq1  CATTTATTGAACACCCCCCTAATTTTTGTGGCCAAATACTGCACAACATT  100
      |||||||||||||  |||||||||||||| ||||||||||||||||||||
seq2  CATTTATTGAACA--CCCCTAATTTTTGT-GCCAAATACTGCACAACATT  95

seq1  CTTTGAATGTGTTATCTTGCTGCGTTCTTATACTACGTTCATGCATTATT  150
      ||||||||||| |||| ||||||| ||||||||||||||||||||||| |
seq2  CTTTGAATGTGGTATC-TGCTGCG-TCTTATACTACGTTCATGCATTA-T  142

seq1  ATCTCAACTTTATGTCTGAAGAAATTGAGCGCAGGAAATGTTAAATGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAACTTTATGTCTGAAGAAATTGAGCGCAGGAAATGTTAAATGACT  192

seq1  ATTCTAAGGTAGGAGGTCACCCACTAAGGAGACGAACCAGGATTTAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGGTAGGAGGTCACCCACTAAGGAGACGAACCAGGATTTAATCT  242

seq1  AATCCTTCTTTTAAATCCTATGTTGTTTTACATGATTCTTTTAAGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCTTTTAAATCCTATGTTGTTTTACATGATTCTTTTAAGAATGA  292

seq1  TATTCAGAGATGGCTATTTAAATGAAGTTCCTTCATTTTGGAGAGTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAGATGGCTATTTAAATGAAGTTCCTTCATTTTGGAGAGTTTAA  342

seq1  CGAAGGACTATATAATTCACAAAACATATTCAATGTCACAATGGAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGACTATATAATTCACAAAACATATTCAATGTCACAATGGAGTTCA  392

seq1  CTCTGAATAGCTAAGTAAAGCCATCTATAGCAAGCTCTCAGCGACCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATAGCTAAGTAAAGCCATCTATAGCAAGCTCTCAGCGACCCAAA  442

seq1  GGAACCCTGTCTTACACATCACCACATGCTGTATTTATTTTTCAGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTGTCTTACACATCACCACATGCTGTATTTATTTTTCAGTTAAA  492

seq1  ATTTCTTGTCTTTGCTAGCCTCTGTTTTGGGGCACTGAGGCTGCAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGTCTTTGCTAGCCTCTGTTTTGGGGCACTGAGGCTGCAGCAGG  542

seq1  GACCAGTGGGTCTGAGTTTCACCCCTCTTGACTTTGCACCCCCTAACCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTGGGTCTGAGTTTCACCCCTCTTGACTTTGCACCCCCTAACCGT  592

seq1  AAAGGTGCTCATATACAATTAGCTGGGATAGGAGAAGAGAAATAGAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGCTCATATACAATTAGCTGGGATAGGAGAAGAGAAATAGAAGCA  642

seq1  GCGGTTAGTTTAGTAGTAGCAATAGGTTTAACTTGTGTATGTTTTCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTAGTTTAGTAGTAGCAATAGGTTTAACTTGTGTATGTTTTCTTAT  692

seq1  TATTAAAAGTACTCTAAATTTTCTTCATAGTGATTTCTGTTTCAGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAGTACTCTAAATTTTCTTCATAGTGATTTCTGTTTCAGAAAAT  742

seq1  TAAAAAAATAATTGAAATGTCTTTGTCACTATACTTCAAAGGCTAAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAATTGAAATGTCTTTGTCACTATACTTCAAAGGCTAAGATT  792

seq1  CTTGAAGGAGTTTAGATCAATAAATTGTTTTCCACACATTTAAATTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGAGTTTAGATCAATAAATTGTTTTCCACACATTTAAATTCTGC  842

seq1  ATTCTCTTTATATCATTGTGAATATGAAATGAAAAATATTTTCAAAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTATATCATTGTGAATATGAAATGAAAAATATTTTCAAAAGTT  892

seq1  TAAAACATTTACCCTCTTTTCCTACTGATTACCCTGACAAAATAAAAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTTACCCTCTTTTCCTACTGATTACCCTGACAAAATAAAAGGC  942

seq1  TAGCTTAGAAGTACATTTCTCTGTTGACAAAACAGGTCCACCTTGGCCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAGAAGTACATTTCTCTGTTGACAAAACAGGTCCACCTTGGCCCA  992

seq1  CTTGACAGTCGATTCTTAATTAGAAAGTGCTCTAATGAGCACAAATGTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAGTCGATTCTTAATTAGAAAGTGCTCTAATGAGCACAAATGTTG  1042

seq1  GTGTTAGCTTCCAGCACTCTGGCCTAGGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  GTGTTAGCTTCCAGCACTCTGGCCTAGGAATTC  1075