BAC Information

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BAC

Clone NameB6Ng01-140A19
Chromosome3 (Build37)
Map Location 78,764,535 - 78,765,601
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716
Downstream geneLOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140A19.bB6Ng01-140A19.g
ACCDH938879DH938880
length1,2471,059
definitionDH938879|Mus musculus domesticus DNA, BAC clone: B6Ng01-140A19, 5' end.DH938880|Mus musculus domesticus DNA, BAC clone: B6Ng01-140A19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttcacaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacagggagc
taaaaccatccagtggaagaaagacagcattttcaacaattgtgctggca
caactggttgttatcgtgtagaagaatgcgaatcgatccatacttatccc
cttgtactagtcaaatctagtggatcaagaacttcaataaaaccacagaa
ctgaaacttatagaggagaaagtgggaaagccttgagatttgggcacagg
taaattctgaacgaatcagccattgctgtgctgtaagatccgagaatgac
aatggaactatgaactcaaggttcgcaggcaaaagaatccgtctagacaa
agaatcgcacgattagaggactactattcaatagatgggacatagtc
gaattctctaggacaacactcaggtgctatacatcaagaaatgtatgtag
gaaatatggagtcatcttggaaggttgcatcacacaagggattttttccc
cccaagggtaaaagtcttttgcatttcctctctgcagaattctctttaat
attctttggcttctttccacatatttcgaaaaatagcaagatacgatact
gcacacatgagtgcatgaggaacgaagcgaagggatagatcttgggctcg
tttcagctttcagagaacaaccctgccttttcccatcgagaagtagctgt
gaggggctgcagtgttgtggcatgccccatttgctctctggacagtcttt
gattccaggctccttcccttgttgctcaagaccttaaggggtctaagaac
tgtttttccttactaggaatcaagttgaggttttcatgagtgctggatgt
tccttgccagttagcttctcccctgtgcccgtctaaggtctgcatgagaa
gccctactaagcagatctgttccaatacagaggggctcaataccacaatc
cttatctagatcaaaccttccattctattccttgtaggtttgaattatgt
tacactgtgatggtcctaagcctgtctcagcactccagggtcatctacca
cctttaaggctgacaactgctatgttagccatgcttctcaattcccctct
gccctgtagcacaacatgttcgcaggtgtctcggatcaaaattgctttct
ttagtgggaggagagggacatctcctgcctaccgccaagtgtcatgaata
ttgggttggtttatacaccagccattatggtgaaagtcagcttgtaatgt
tatcttttattttttgagattataatataactatattacatcatatcttt
ctccttccctttcttccctcaaacccttcccacacaccccttcttgctct
ctttcaaactcatggcatctattctcataattgattatagctctctcttc
ctcactaaataaaaagcacatctactcggtattatttgtgacattttcaa
tgcgatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78764535_78765601
seq2: B6Ng01-140A19.g_66_1124 (reverse)

seq1  CAAATCGCATTGAAAATGTACACAAATAATACCGAGTAGGATGTGCTTAT  50
      ||||||||||||||||||| |||||||||||||||||| ||||||||| |
seq2  CAAATCGCATTGAAAATGT-CACAAATAATACCGAGTA-GATGTGCTT-T  47

seq1  TTATTTAAGTGAGG-AGAGAGAGCTATTAATCAATTAATGGAGAATAGAT  99
      |||||| ||||||| ||||||||||| ||||||||||   ||||||||||
seq2  TTATTT-AGTGAGGAAGAGAGAGCTA-TAATCAATTA--TGAGAATAGAT  93

seq1  GCCATGAGTTTGAAAGAGAGCAAGAAGGGGTGTGTGGGAGGGTTTGGAGG  149
      ||||||||||||||||||||||||||||||||||||||| || || ||||
seq2  GCCATGAGTTTGAAAGAGAGCAAGAAGGGGTGTGTGGGAAGGGTTTGAGG  143

seq1  GAAGAAAGGGAAGGGAGAAAGATATGATGTAATATAGTTATATTATAATC  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGGAA-GGAGAAAGATATGATGTAATATAGTTATATTATAATC  192

seq1  TCAAAAAATAAAAGATAACATTACAAGCCTGACTTTCACCATAATGGCTG  249
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAAAAAATAAAAGATAACATTACAAG-CTGACTTTCACCATAATGGCTG  241

seq1  GTGTATAAACCAACCCAATATTCATGACACTTGGCGGTAGGCAGGAGATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAAACCAACCCAATATTCATGACACTTGGCGGTAGGCAGGAGATG  291

seq1  TCCCTCTCCTCCCACTAAAGAAAGCAATTTTGATCCGAGACACCTGCGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCTCCCACTAAAGAAAGCAATTTTGATCCGAGACACCTGCGAA  341

seq1  CATGTTGTGCTACAGGGCAGAGGGGAATTGAGAAGCATGGCTAACATAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTGCTACAGGGCAGAGGGGAATTGAGAAGCATGGCTAACATAGC  391

seq1  AGTTGTCAGCCTTAAAGGTGGTAGATGACCCTGGAGTGCTGAGACAGGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCAGCCTTAAAGGTGGTAGATGACCCTGGAGTGCTGAGACAGGCT  441

seq1  TAGGACCATCACAGTGTAACATAATTCAAACCTACAAGGAATAGAATGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCATCACAGTGTAACATAATTCAAACCTACAAGGAATAGAATGGA  491

seq1  AGGTTTGATCTAGATAAGGATTGTGGTATTGAGCCCCTCTGTATTGGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGATCTAGATAAGGATTGTGGTATTGAGCCCCTCTGTATTGGAAC  541

seq1  AGATCTGCTTAGTAGGGCTTCTCATGCAGACCTTAGACGGGCACAGGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCTTAGTAGGGCTTCTCATGCAGACCTTAGACGGGCACAGGGGA  591

seq1  GAAGCTAACTGGCAAGGAACATCCAGCACTCATGAAAACCTCAACTTGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAACTGGCAAGGAACATCCAGCACTCATGAAAACCTCAACTTGAT  641

seq1  TCCTAGTAAGGAAAAACAGTTCTTAGACCCCTTAAGGTCTTGAGCAACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTAAGGAAAAACAGTTCTTAGACCCCTTAAGGTCTTGAGCAACAA  691

seq1  GGGAAGGAGCCTGGAATCAAAGACTGTCCAGAGAGCAAATGGGGCATGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGCCTGGAATCAAAGACTGTCCAGAGAGCAAATGGGGCATGCC  741

seq1  ACAACACTGCAGCCCCTCACAGCTACTTCTCGATGGGAAAAGGCAGGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTGCAGCCCCTCACAGCTACTTCTCGATGGGAAAAGGCAGGGTT  791

seq1  GTTCTCTGAAAGCTGAAACGAGCCCAAGATCTATCCCTTCGCTTCGTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGAAAGCTGAAACGAGCCCAAGATCTATCCCTTCGCTTCGTTCC  841

seq1  TCATGCACTCATGTGTGCAGTATCGTATCTTGCTATTTTTCGAAATATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCACTCATGTGTGCAGTATCGTATCTTGCTATTTTTCGAAATATGT  891

seq1  GGAAAGAAGCCAAAGAATATTAAAGAGAATTCTGCAGAGAGGAAATGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGCCAAAGAATATTAAAGAGAATTCTGCAGAGAGGAAATGCAA  941

seq1  AAGACTTTTACCCTTGGGGGGAAAAAATCCCTTGTGTGATGCAACCTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTTACCCTTGGGGGGAAAAAATCCCTTGTGTGATGCAACCTTCC  991

seq1  AAGATGACTCCATATTTCCTACATACATTTCTTGATGTATAGCACCTGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACTCCATATTTCCTACATACATTTCTTGATGTATAGCACCTGAG  1041

seq1  TGTTGTCCTAGAGAATTC  1067
      ||||||||||||||||||
seq2  TGTTGTCCTAGAGAATTC  1059