BAC Information

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BAC

Clone NameB6Ng01-140C06
Chromosome3 (Build37)
Map Location 71,742,567 - 71,743,680
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385
Downstream geneLOC100041459, 2010204N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C06.bB6Ng01-140C06.g
ACCDH938949DH938950
length1,2401,089
definitionDH938949|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C06, 5' end.DH938950|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacagctttgcgagtttgtcagatgagaatgacaatgttctatg
aaccttttataaaggaataaatatattgtattgtactgtgaacttgtggg
tgcttttcattagtatctgtacagtgtaaatgatgatcatggaaataaaa
tttcttaattcaatataaatagaaacaaaaggtattctaccaaattcatt
ctatgaagccacaattactctgatatgtaaacaacacaaagacccaacaa
tgaaagagaacatcagacctatttcccttatgaatatcggtgcaaaaatt
ctcaataaaattctccccaactgaatcaaagaacacattaaaatgattat
ccatcatgatcattttaggcttcatctcagggatgtggggaaagtttaat
atattgaaattcatcaatgaaatccactatataaacaaacaagacaaaaa
ccacatgatcatcttgttagatgctgagaaagcatttgacaaatccaaca
cccattcacaataactcttggaaagatcaggaattcaaggcccataccta
aacataataaaagaaatatacagcaaattagtagccaaaatcaaactaaa
tggagagaatctggaaacaatcacactaaaatcagggactagacaaggat
gcccactctctcttcatctcttcatctattcaatatagtacttacagtcc
ttgccataggaattaatgaataaacggagatcaaggggatacaaattaga
aagtaaaaagtcaaaatatcactatttgcagatgatatcatagtatataa
aagtgaccctcaaaattccaccatagaactcctaaacctgataaacacct
tcagtgcagtagctggatataaaattaactcaaacaaattagcgaccttt
ctctacaaaaggataaacagctgagaagaaatagggaaacacacccttca
catagtacaataatataaaatacctatactaaggagtgaaagatctatat
gataagacttcaatctctgagaagaatctagaagatctctgagatggaag
atcgccatactaatggaatggcagataattagtaacatagctatcttgct
gaggcatctacgatcaaacaattctcatcaaaaatactcattgtccagag
tgaaggtcaacttgctaatcactggatacaagtctagattgccaaagctt
ctagatagagacctcttgtgtgattcacatcgcgctgatc
gaattcttttaggacaaaacagttttactgtctaaaatgctttttatatg
ggcaaaataaatacttgctaaaatgtgttgaaagatgagaatcctgttgc
aaaccaaccattctataaaataggctacaaacattaatttcacacctttt
gtgcccctccactgagtacaaaacatgttttacctgtatttacgtgcatt
catttcttcgtggctaataaaaattgagcaaattaaaaagtaactatcca
tttttaatgctgtagtcattaaaataacagcacaaaatttatgacatgac
aaggtgctacactttatgttgaatagagtaatataaatcctcatcataaa
agaatggctttctgatgtatttcatgcttgttaaactataataattacct
atgtatctatatatctaaatctatgttcacagatatgatgataatgcttt
taacaagttacttcttaaacaatatttattctgtggttcaaatgttgaaa
gattttggtgatacattctcaatcatcttagagcattttacaaatacagg
taatacaaggaatgaaaatatacctacataattaacttttgacctgattc
tgcataaaaataagcccaataatgataatgtgtgcaatgatcataataga
gacatgagactacaattgtatatatttattcttatcaacaaatatattac
tgttcttgacctggatcctatgtatttaaatgattttctaaactgtctat
atatggtccaggaacaggagtgcatatacagaaaattgcacttaatagtt
ctttgaagctacccattatatatcaaattacctcattttaagcaatttct
ttgcatgtggaagagtatatgctggaaaagaatactcacatttctgtttc
cctgacattttgtattctgtgaaatatagatatagatgattgtaaagcat
agcatcaaaagtcacaaaggaaattcccagatttaaacagtagaaaaatt
gttactcaatagaaatagcataagtatgtgaatgatagccaccatgctga
gtgtctgtgaaaaagcaaaatcttggaaatcagaattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71742567_71743680
seq2: B6Ng01-140C06.g_66_1154 (reverse)

seq1  ATAATATCTGAAATTTTCCAAAAGATTTCTGCTTTTTCACAGACACTCAG  50
      ||||| |||||   |||||  ||||||| |||||||||||||||||||||
seq2  ATAAT-TCTGA---TTTCC--AAGATTT-TGCTTTTTCACAGACACTCAG  43

seq1  CATGGTGGCTAATTCATTTCACATACTTAATGCTATTTCTATTGAGTTAA  100
      |||||||||||  ||| ||||||||||| ||||||||||||||||||  |
seq2  CATGGTGGCTA--TCA-TTCACATACTT-ATGCTATTTCTATTGAGT--A  87

seq1  ACAAATTTATATCCTTACTTGTATAAAATCTTGGGAATTTCCTTTGTGAC  150
      |||| |||   ||  ||| ||| | ||||| |||||||||||||||||||
seq2  ACAATTTT---TC--TAC-TGT-TTAAATC-TGGGAATTTCCTTTGTGAC  129

seq1  TTTTTGATGCTATGCTTTTACAATCATCTATATCTATATTTTCACAGAAT  200
       |||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  -TTTTGATGCTATGC-TTTACAATCATCTATATCTATA-TTTCACAGAAT  176

seq1  ACAAAATGTCAGGGGAAACAGAAATGTGAGTATTCTTTTCCAGCATATAC  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGTCA-GGGAAACAGAAATGTGAGTATTCTTTTCCAGCATATAC  225

seq1  TCTTCCACATGCAAAGAAATTGCTTAAAATGAGGTAATTTGATATATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACATGCAAAGAAATTGCTTAAAATGAGGTAATTTGATATATAAT  275

seq1  GGGTAGCTTCAAAGAACTATTAAGTGCAATTTTCTGTATATGCACTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTTCAAAGAACTATTAAGTGCAATTTTCTGTATATGCACTCCTG  325

seq1  TTCCTGGACCATATATAGACAGTTTAGAAAATCATTTAAATACATAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGACCATATATAGACAGTTTAGAAAATCATTTAAATACATAGGAT  375

seq1  CCAGGTCAAGAACAGTAATATATTTGTTGATAAGAATAAATATATACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAAGAACAGTAATATATTTGTTGATAAGAATAAATATATACAAT  425

seq1  TGTAGTCTCATGTCTCTATTATGATCATTGCACACATTATCATTATTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTCATGTCTCTATTATGATCATTGCACACATTATCATTATTGGG  475

seq1  CTTATTTTTATGCAGAATCAGGTCAAAAGTTAATTATGTAGGTATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTATGCAGAATCAGGTCAAAAGTTAATTATGTAGGTATATTTT  525

seq1  CATTCCTTGTATTACCTGTATTTGTAAAATGCTCTAAGATGATTGAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTGTATTACCTGTATTTGTAAAATGCTCTAAGATGATTGAGAAT  575

seq1  GTATCACCAAAATCTTTCAACATTTGAACCACAGAATAAATATTGTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACCAAAATCTTTCAACATTTGAACCACAGAATAAATATTGTTTAA  625

seq1  GAAGTAACTTGTTAAAAGCATTATCATCATATCTGTGAACATAGATTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACTTGTTAAAAGCATTATCATCATATCTGTGAACATAGATTTAG  675

seq1  ATATATAGATACATAGGTAATTATTATAGTTTAACAAGCATGAAATACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGATACATAGGTAATTATTATAGTTTAACAAGCATGAAATACAT  725

seq1  CAGAAAGCCATTCTTTTATGATGAGGATTTATATTACTCTATTCAACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCCATTCTTTTATGATGAGGATTTATATTACTCTATTCAACATA  775

seq1  AAGTGTAGCACCTTGTCATGTCATAAATTTTGTGCTGTTATTTTAATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGCACCTTGTCATGTCATAAATTTTGTGCTGTTATTTTAATGAC  825

seq1  TACAGCATTAAAAATGGATAGTTACTTTTTAATTTGCTCAATTTTTATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATTAAAAATGGATAGTTACTTTTTAATTTGCTCAATTTTTATTA  875

seq1  GCCACGAAGAAATGAATGCACGTAAATACAGGTAAAACATGTTTTGTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGAAGAAATGAATGCACGTAAATACAGGTAAAACATGTTTTGTACT  925

seq1  CAGTGGAGGGGCACAAAAGGTGTGAAATTAATGTTTGTAGCCTATTTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGGGGCACAAAAGGTGTGAAATTAATGTTTGTAGCCTATTTTAT  975

seq1  AGAATGGTTGGTTTGCAACAGGATTCTCATCTTTCAACACATTTTAGCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTTGGTTTGCAACAGGATTCTCATCTTTCAACACATTTTAGCAA  1025

seq1  GTATTTATTTTGCCCATATAAAAAGCATTTTAGACAGTAAAACTGTTTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTTGCCCATATAAAAAGCATTTTAGACAGTAAAACTGTTTTG  1075

seq1  TCCTAAAAGAATTC  1114
      ||||||||||||||
seq2  TCCTAAAAGAATTC  1089