BAC Information

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BAC

Clone NameB6Ng01-140D04
Chromosome3 (Build37)16 (Build37)
Map Location 41,059,106 - 41,059,73773,915,467 - 73,916,557
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140D04.bB6Ng01-140D04.g
ACCDH938993DH938994
length9401,063
definitionDH938993|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D04, 5' end.DH938994|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,106 - 41,059,737)(73,915,467 - 73,916,557)
sequence
gaattctttgtttagctctgagccccattttttaatgtgattatctgatt
ttctggagtccaccttcttcagttctttatatatattagatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggcct
ttttgtcttattgatggtgtcctttgccttacagaagctttgcaattttt
tgaggtcccatttgtcaattctcgatcttacagcacaagccatttctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggcttttccccac
tttcttctctataagtttcactgtctggttttatgtggagttccttgatc
cacttagatttgaccttagtacaaggatataggaatggattaattcgcat
tcttctacatgttaacaaccaattgtgccagcaccatttgttgaaatgct
gtctttttaacactggatggttttagctcccttgtcaaagatcaagtgac
cataggtgtgtgggttcatttctgagtcttcaattctattccactggtct
acttgtctgtcactataccagtaccatgcagtttttatcacaattgctct
gtagtacagctttaggtcaggcatggtgattccaccagaggtgcttttat
tcttgagaagagtttttgctatcctaggttttttgttattccagatgaat
ttgcagatagctctttctaattcgttgaagaattaagttggaattttgtt
ggggattgcattgaatctttagattgcttttggcagatagccatttttac
tatattgatcctgccaatccatgagcatgggagatctttccatcttctga
gatcttctttaattttctttattcagagacttgaagttctttttcatgca
gatctttcacttccttagttagagtcatgccaaggtattc
gaattccaggcacattcaaagcaataccccacctccacaacccccagctc
cgccattaggttacgtgtccggagccttgatttctgatttggagacagat
gttccagatgaggatgctgatgatgaagaggaaccattagaaattcccag
gcccctcagagcactagaccagacacctggatccagtatggacaatctag
acagctctgtcacaggtaacaagacaaatagaatgagaataagtgaccta
tttgcaacatgaaaatgcatcataaatcaaatgcttccttccactccatc
tatttttgtaacattttaaatatgataatgttaaacaccaaattcaaaaa
ggatttagaaatacttttgctttgctgctaaaatgataaggaaattcatg
aattttaaaaagctttaaagacatgaaggaaaactcaattatattccggg
ctttcaagaaaagttcactctgctagggaaccaagtgtgttacatgaaaa
agctttacttttagaaatgatataatttgtatatcgggagcaacatacaa
agtgaatgagatcttaaagcgctccttgatattttaccctgtaaagtcat
tcactggcgaaaataagggggccttcagaaggagcctctcttaggttaca
tacggcattatatttttggagtggaaacatgcatagtgagataagaagta
catttatgcatttcacattgctgactataatcaccagtcctctgccaaaa
agtgtaattattttgactgtttattgcttaggcttcctttctttctttct
ttttttttttttttctttttctttcttgtcacaaagcacactttcattgg
tgctagcctgggatgactctaagagctaagcagcagctctttcctaggat
ttaaaattgtcaaataaaattcttacatccacaaaggaagtagcaaggac
aaacttcagtctttctattcctactggacagagtactacactaaatctga
ttctgcattctctgggccatctcagacagcatctacgtcactagatatct
cccccctccaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059106_41059737
seq2: B6Ng01-140D04.b_48_677 (reverse)

seq1  AATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAA  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATCACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAA  50

seq1  CTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATT  100
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  CTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAGTGGAATAGAATT  100

seq1  GAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAA  150
      ||||||||||||| ||| |||||||||||||||||||||||||| |||||
seq2  GAAGACTCAGAAATGAACCCACACACCTATGGTCACTTGATCTTTGACAA  150

seq1  GGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGT  200
      |||||||||||||||||||||  |||||||||||| ||||||||||||||
seq2  GGGAGCTAAAACCATCCAGTGTTAAAAAGACAGCA-TTTCAACAAATGGT  199

seq1  GCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTC  250
      |||||||||| ||||||||| |||||||||||||||||||| ||||| ||
seq2  GCTGGCACAATTGGTTGTTAACATGTAGAAGAATGCGAATTAATCCATTC  249

seq1  CTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACAT  300
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATATCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTCCACAT  299

seq1  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTG  350
      ||||||  ||||| |||||||||||||| ||||||||||||||||||| |
seq2  AAAACC--AGACAGTGAAACTTATAGAGAAGAAAGTGGGGAAAAGCCTCG  347

seq1  AAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGT  400
      ||||||||| ||||||||||||||||||| ||||||||| ||||||||||
seq2  AAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGAAATGGCTTGT  397

seq1  GCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTT  450
      |||||||||| |||||| ||||||||||||||||  ||| ||||||||||
seq2  GCTGTAAGATCGAGAATTGACAAATGGGACCTCAAAAAATTGCAAAGCTT  447

seq1  CTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATT  499
      ||| |||||||| |||||| ||||||||||||||||| |||||||||| |
seq2  CTGTAAGGCAAAGGACACCATCAATAAGACAAAAAGGCCACCAACAGACT  497

seq1  GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAAT  549
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCTAAT  547

seq1  ATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCAT  599
      |||||| ||||||| ||||||||||| |||||||||||| |||| | |||
seq2  ATATATAAAGAACTGAAGAAGGTGGACTCCAGAAAATCAGATAATCACAT  597

seq1  TAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  632
      |||||||||||||||||||||||||||||||||
seq2  TAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  630

seq1: chr16_73915467_73916557
seq2: B6Ng01-140D04.g_67_1129 (reverse)

seq1  GGGTGGGGGGGGGGGAAGGAATTATCTAAGTGAACGTAGATATGCTTGTC  50
      |||||| |||||| ||      ||||| |||| ||||||  |||| ||||
seq2  GGGTGGAGGGGGGAGA------TATCT-AGTG-ACGTAG--ATGC-TGTC  39

seq1  TGAGATGGCCCAAGAGAATGCAGAAATCAGATTTAGGTTTGTAGTAACTC  100
      ||||||||||| ||||||||||| ||||||||||||   |||||| ||||
seq2  TGAGATGGCCC-AGAGAATGCAG-AATCAGATTTAG---TGTAGT-ACTC  83

seq1  TGTCCAGTAAGGGATAGAAAGACTGAAGTTTGTCCTTTGCTACTTCCTTT  150
      |||||||| ||| |||||||||||||||||||||| ||||||||||||||
seq2  TGTCCAGT-AGGAATAGAAAGACTGAAGTTTGTCC-TTGCTACTTCCTTT  131

seq1  GTGGATGTAAGGAATTTTATTTGGACAATTTTTAAATCCTAGGAAAGAGG  200
      |||||||||| ||||||||||| ||||| ||||||||||||||||||| |
seq2  GTGGATGTAA-GAATTTTATTT-GACAA-TTTTAAATCCTAGGAAAGA-G  177

seq1  CTGCTGCTTAGCTCTTAGAGTCATCCCAGGCTAGCACCAATGGAAGTGTG  250
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGCTGCTTAGCTCTTAGAGTCATCCCAGGCTAGCACCAATGAAAGTGTG  227

seq1  CTTTGTGAACAAGAAAAGAAAAAAGAAAAAAAAAAAAAAAAGAAAGAAAG  300
      ||||||| ||||| |||||||||   ||||||||||||||||||||||||
seq2  CTTTGTG-ACAAG-AAAGAAAAA--GAAAAAAAAAAAAAAAGAAAGAAAG  273

seq1  AAAAGGAAGCCTAAGCAATAAACAGTCAAAATAATTACACTTTTTGGCAG  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAGGAAGCCTAAGCAATAAACAGTCAAAATAATTACACTTTTTGGCAG  322

seq1  AGGACTGGTGATTATAGTCAGCAATGTGAAATGCATAAATGTACTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGTGATTATAGTCAGCAATGTGAAATGCATAAATGTACTTCTTA  372

seq1  TCTCACTATGCATGTTTCCACTCCAAAAATATAATGCCGTATGTAACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTATGCATGTTTCCACTCCAAAAATATAATGCCGTATGTAACCTA  422

seq1  AGAGAGGCTCCTTCTGAAGGCCCCCTTATTTTCGCCAGTGAATGACTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCTCCTTCTGAAGGCCCCCTTATTTTCGCCAGTGAATGACTTTA  472

seq1  CAGGGTAAAATATCAAGGAGCGCTTTAAGATCTCATTCACTTTGTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAAAATATCAAGGAGCGCTTTAAGATCTCATTCACTTTGTATGTT  522

seq1  GCTCCCGATATACAAATTATATCATTTCTAAAAGTAAAGCTTTTTCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCGATATACAAATTATATCATTTCTAAAAGTAAAGCTTTTTCATGT  572

seq1  AACACACTTGGTTCCCTAGCAGAGTGAACTTTTCTTGAAAGCCCGGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTTGGTTCCCTAGCAGAGTGAACTTTTCTTGAAAGCCCGGAATA  622

seq1  TAATTGAGTTTTCCTTCATGTCTTTAAAGCTTTTTAAAATTCATGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGTTTTCCTTCATGTCTTTAAAGCTTTTTAAAATTCATGAATTT  672

seq1  CCTTATCATTTTAGCAGCAAAGCAAAAGTATTTCTAAATCCTTTTTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCATTTTAGCAGCAAAGCAAAAGTATTTCTAAATCCTTTTTGAAT  722

seq1  TTGGTGTTTAACATTATCATATTTAAAATGTTACAAAAATAGATGGAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTTAACATTATCATATTTAAAATGTTACAAAAATAGATGGAGTG  772

seq1  GAAGGAAGCATTTGATTTATGATGCATTTTCATGTTGCAAATAGGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGCATTTGATTTATGATGCATTTTCATGTTGCAAATAGGTCACT  822

seq1  TATTCTCATTCTATTTGTCTTGTTACCTGTGACAGAGCTGTCTAGATTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCATTCTATTTGTCTTGTTACCTGTGACAGAGCTGTCTAGATTGT  872

seq1  CCATACTGGATCCAGGTGTCTGGTCTAGTGCTCTGAGGGGCCTGGGAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGGATCCAGGTGTCTGGTCTAGTGCTCTGAGGGGCCTGGGAATT  922

seq1  TCTAATGGTTCCTCTTCATCATCAGCATCCTCATCTGGAACATCTGTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGTTCCTCTTCATCATCAGCATCCTCATCTGGAACATCTGTCTC  972

seq1  CAAATCAGAAATCAAGGCTCCGGACACGTAACCTAATGGCGGAGCTGGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGAAATCAAGGCTCCGGACACGTAACCTAATGGCGGAGCTGGGG  1022

seq1  GTTGTGGAGGTGGGGTATTGCTTTGAATGTGCCTGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGAGGTGGGGTATTGCTTTGAATGTGCCTGGAATTC  1063