BAC Information

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BAC

Clone NameB6Ng01-140G17
Chromosome3 (Build37)
Map Location 58,102,873 - 58,222,060
singlet/doubletdoublet
Overlap geneTsc22d2
Upstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
Downstream geneD3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G17.bB6Ng01-140G17.g
ACCDH939155DH939156
length1,0891,097
definitionDH939155|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G17, 5' end.DH939156|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,220,968 - 58,222,060)(58,102,873 - 58,103,980)
sequence
gaattctcacgacccccttctatagactcacttagggatagtcaaagcta
gacttcacattttatcattctctccagtcttccaaattcactgatggaga
ctgcttctattccatcacttccctgcccccaggaaaaggctttctggttt
tcagtcttaccaactcaggcaaaactctaccataaacattaaaaagtaat
ttactaccttagaaagggaccctctttcttactgaagggggggggggcaa
taccagctctcatcttcaaactattaagctgaaatacatcaatcatgttg
aatcactatccatttaattgcttaaaaagaaaacaaaaacaaaacaacaa
caacaaaaatcccgtgacttttgtctccttacttcaaaactttgaattga
tttttaccaaatttaagttttaaaaataaagaccctaagtggaaacaaac
tccccaaactgcatcttaagatatttggggcaagcaactctatcagatat
tcaaaatttaaaaaaatgtacatacctgtcttcatcaccatcaacaggaa
tagctatgctgaatacagaggtggccagactgttcataggtgttaactga
agagggtttgtcagggcatctgcaactggaggcttcacaacaggcttact
ttcagcaatgagagaaagtggtgcttgaggtaggggttctgattttcttc
tagtatcgtcaacttgcccgactaaaggctgggtctgagtctgaaactgg
cttaggtcagactgtggtagacttgttggtgcactgtgtgtgccttgagc
taagggtgaaccaacttgctggatgacgctgctgctccggctgactggcg
tatggctgctcagctgctgagactggcccagaggcgcgggtacatttggc
atagtaacagaagtggtgggcacactaggcacgcttggaacgggtaccgc
tgcagccacgtttggaactctcggcaccacgtgtgaggaccacagcacgg
cttgcagctgaacactggccacccatctgctgcggaggcttcacggcctg
gggctgcccaaccccagtaagcccggacctgccgcacca
gaattcttaactaatacagtagagataggctgaaattgggcacaatccat
ctccaacatgaacattcagaaatccagtttcaaagctgttcaccagggga
ttaaagtctggaatggagttttgagtcccactctcatgtatatcctctag
ggggtgaccatttgggagaacataagaagccagagctccctctggcattc
ctggcaagagaaccaagggcatttcttcaagtattgcttttgcagccctg
tccttaaactgcctagccagttcttatctcctgtcatcacagaatcactg
tggaattccatcaggtcttacaatctatggaagctgaagtctgaatgtta
agatacacacccatccgatgttttttttgttttgttttgttttgttggga
tagggtctcaagtagtccaagctaaccttaaactccctatataatcttga
tcttcctgccaccatctcagaagtgctaggattatagacatacaatggat
aacatgtgtcttagatagggtttctatgcctctgataaaatctcatggcc
aaaagcaacttgggaagcaaagggtttatttggcttacacttccaggtaa
caatccatcactgaaggaagtcaggacaggaactcaaacagggcaggaaa
ctggaggcaagaactgatgcaggagccatggaggaatgctgcttaggatt
tctccccaggactttcttagcttgcttgttttatacatcccagggacacc
tgccattcacaatgggttaggctcacaaagacccaactcaatcactaatt
ggaaaatacaaaacagtcttgcctatgggtaaatcctgtggatgcatttt
ttcgattaagagttcctcttcccaaataactgtagcttgtctcaaattga
cataataccatctgggacagcatgctaccttcatgttggctcatgaaaac
aagagatagccaaatgtagatagagctctggaccgttttccagaagactc
tgccagcagtagacttaattgaatttgggttgggaaatgatgatgaatga
atgataatttcccaacttgtctcattacttagggtctgtagttacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_58220968_58222060
seq2: B6Ng01-140G17.b_46_1134 (reverse)

seq1  TGGTGCAGCCAGGCTCCGGGCTTACTGGGGTTGGGCAGCCCCAGCCCGTG  50
      |||||| | |||| |||||||||||||||||||||||||||||| |||||
seq2  TGGTGC-GGCAGG-TCCGGGCTTACTGGGGTTGGGCAGCCCCAGGCCGTG  48

seq1  CAGCCTCCGCAGCAGATGGGTGG-CAGTGGTCAGCTGCCAGCCGTGCCTG  99
       |||||||||||||||||||||| ||||| |||||||| ||||||||   
seq2  AAGCCTCCGCAGCAGATGGGTGGCCAGTGTTCAGCTGCAAGCCGTGC--T  96

seq1  GTGGTCCTCACACCGTGGTGCCCGGAGTTCCAAACGTGCCTGCAGCGGTA  149
      |||||||||||| |||||||||  |||||||||||||| |||||||||||
seq2  GTGGTCCTCACA-CGTGGTGCCGAGAGTTCCAAACGTGGCTGCAGCGGTA  145

seq1  CCCGTTCCAAGCGTGCCTAGTGTGCCCACCACTTCTGTTACTATGCCAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTCCAAGCGTGCCTAGTGTGCCCACCACTTCTGTTACTATGCCAAA  195

seq1  TGTACCCGCGCCTCTGGGCCAGTCTCAGCAGCTGAGCAGCCATACGCCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCGCGCCTCTGGGCCAGTCTCAGCAGCTGAGCAGCCATACGCCAG  245

seq1  TCAGCCGGAGCAGCAGCGTCATCCAGCAAGTTGGTTCACCCTTAGCTCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCGGAGCAGCAGCGTCATCCAGCAAGTTGGTTCACCCTTAGCTCAA  295

seq1  GGCACACACAGTGCACCAACAAGTCTACCACAGTCTGACCTAAGCCAGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACAGTGCACCAACAAGTCTACCACAGTCTGACCTAAGCCAGTT  345

seq1  TCAGACTCAGACCCAGCCTTTAGTCGGGCAAGTTGACGATACTAGAAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCAGACCCAGCCTTTAGTCGGGCAAGTTGACGATACTAGAAGAA  395

seq1  AATCAGAACCCCTACCTCAAGCACCACTTTCTCTCATTGCTGAAAGTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAACCCCTACCTCAAGCACCACTTTCTCTCATTGCTGAAAGTAAG  445

seq1  CCTGTTGTGAAGCCTCCAGTTGCAGATGCCCTGACAAACCCTCTTCAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTGAAGCCTCCAGTTGCAGATGCCCTGACAAACCCTCTTCAGTT  495

seq1  AACACCTATGAACAGTCTGGCCACCTCTGTATTCAGCATAGCTATTCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTATGAACAGTCTGGCCACCTCTGTATTCAGCATAGCTATTCCTG  545

seq1  TTGATGGTGATGAAGACAGGTATGTACATTTTTTTAAATTTTGAATATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTGATGAAGACAGGTATGTACATTTTTTTAAATTTTGAATATCT  595

seq1  GATAGAGTTGCTTGCCCCAAATATCTTAAGATGCAGTTTGGGGAGTTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGTTGCTTGCCCCAAATATCTTAAGATGCAGTTTGGGGAGTTTGT  645

seq1  TTCCACTTAGGGTCTTTATTTTTAAAACTTAAATTTGGTAAAAATCAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTAGGGTCTTTATTTTTAAAACTTAAATTTGGTAAAAATCAATT  695

seq1  CAAAGTTTTGAAGTAAGGAGACAAAAGTCACGGGATTTTTGTTGTTGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTTGAAGTAAGGAGACAAAAGTCACGGGATTTTTGTTGTTGTTG  745

seq1  TTTTGTTTTTGTTTTCTTTTTAAGCAATTAAATGGATAGTGATTCAACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGTTTTCTTTTTAAGCAATTAAATGGATAGTGATTCAACAT  795

seq1  GATTGATGTATTTCAGCTTAATAGTTTGAAGATGAGAGCTGGTATTGCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATGTATTTCAGCTTAATAGTTTGAAGATGAGAGCTGGTATTGCCC  845

seq1  CCCCCCCCTTCAGTAAGAAAGAGGGTCCCTTTCTAAGGTAGTAAATTACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCTTCAGTAAGAAAGAGGGTCCCTTTCTAAGGTAGTAAATTACT  895

seq1  TTTTAATGTTTATGGTAGAGTTTTGCCTGAGTTGGTAAGACTGAAAACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTTTATGGTAGAGTTTTGCCTGAGTTGGTAAGACTGAAAACCA  945

seq1  GAAAGCCTTTTCCTGGGGGCAGGGAAGTGATGGAATAGAAGCAGTCTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTTTTCCTGGGGGCAGGGAAGTGATGGAATAGAAGCAGTCTCCA  995

seq1  TCAGTGAATTTGGAAGACTGGAGAGAATGATAAAATGTGAAGTCTAGCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAATTTGGAAGACTGGAGAGAATGATAAAATGTGAAGTCTAGCTT  1045

seq1  TGACTATCCCTAAGTGAGTCTATAGAAGGGGGTCGTGAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATCCCTAAGTGAGTCTATAGAAGGGGGTCGTGAGAATTC  1089

seq1: chr3_58102873_58103980
seq2: B6Ng01-140G17.g_66_1162

seq1  GAATTCTTAACTAATACAGTAGAGATAGGCTGAAATTGGGCACAATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTAATACAGTAGAGATAGGCTGAAATTGGGCACAATCCAT  50

seq1  CTCCAACATGAACATTCAGAAATCCAGTTTCAAAGCTGTTCACCAGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACATGAACATTCAGAAATCCAGTTTCAAAGCTGTTCACCAGGGGA  100

seq1  TTAAAGTCTGGAATGGAGTTTTGAGTCCCACTCTCATGTATATCCTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCTGGAATGGAGTTTTGAGTCCCACTCTCATGTATATCCTCTAG  150

seq1  GGGGTGACCATTTGGGAGAACATAAGAAGCCAGAGCTCCCTCTGGCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGACCATTTGGGAGAACATAAGAAGCCAGAGCTCCCTCTGGCATTC  200

seq1  CTGGCAAGAGAACCAAGGGCATTTCTTCAAGTATTGCTTTTGCAGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGAGAACCAAGGGCATTTCTTCAAGTATTGCTTTTGCAGCCCTG  250

seq1  TCCTTAAACTGCCTAGCCAGTTCTTATCTCCTGTCATCACAGAATCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAACTGCCTAGCCAGTTCTTATCTCCTGTCATCACAGAATCACTG  300

seq1  TGGAATTCCATCAGGTCTTACAATCTATGGAAGCTGAAGTCTGAATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCCATCAGGTCTTACAATCTATGGAAGCTGAAGTCTGAATGTTA  350

seq1  AGATACACACCCATCCGATGTTTTTTTTGTTTTGTTTTGTTTTGTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACACCCATCCGATGTTTTTTTTGTTTTGTTTTGTTTTGTTGGGA  400

seq1  TAGGGTCTCAAGTAGTCCAAGCTAACCTTAAACTCCCTATATAATCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCTCAAGTAGTCCAAGCTAACCTTAAACTCCCTATATAATCTTGA  450

seq1  TCTTCCTGCCACCATCTCAGAAGTGCTAGGATTATAGACATACAATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGCCACCATCTCAGAAGTGCTAGGATTATAGACATACAATGGAT  500

seq1  AACATGTGTCTTAGATAGGGTTTCTATGCCTCTGATAAAATCTCATGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGTCTTAGATAGGGTTTCTATGCCTCTGATAAAATCTCATGGCC  550

seq1  AAAAGCAACTTGGGAAGCAAAGGGTTTATTTGGCTTACACTTCCAGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACTTGGGAAGCAAAGGGTTTATTTGGCTTACACTTCCAGGTAA  600

seq1  CAATCCATCACTGAAGGAAGTCAGGACAGGAACTCAAACAGGGCAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCATCACTGAAGGAAGTCAGGACAGGAACTCAAACAGGGCAGGAAA  650

seq1  CTGGAGGCAAGAACTGATGCAGGAGCCATGGAGGAATGCTGCTTAGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCAAGAACTGATGCAGGAGCCATGGAGGAATGCTGCTTAGGATT  700

seq1  TCTCCCCAGGACTTTCTTAGCTTGCTTGTTTTATACATCCCAGGGACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGGACTTTCTTAGCTTGCTTGTTTTATACATCCCAGGGACACC  750

seq1  TGCCATTCACAATGGGTTAGGCTCACAAAGACCCAACTCAATCACTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCACAATGGGTTAGGCTCACAAAGACCCAACTCAATCACTAATT  800

seq1  GGAAAATACAAAACAGTCTTGCCTATGGGTAAATCCTGTGGATGCATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATACAAAACAGTCTTGCCTATGGGTAAATCCTGTGGATGCATTTT  850

seq1  TTCGATTAAGAGTTCCTCTTCCCAAATAACTGTAGCTTGTCTCAAATTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTAAGAGTTCCTCTTCCCAAATAACTGTAGCTTGTCTCAAATTGA  900

seq1  CATAATACCATCTGGGACAGCATGCTACCTCCATGTTGGCTCATGAAAAC  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATAATACCATCTGGGACAGCATGCTACCTTCATGTTGGCTCATGAAAAC  950

seq1  AAGAGAATAGCCAAAATGTAGATAGAGCTCTGGACCGTTTTCCAGAAGAC  1000
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGAG-ATAGCC-AAATGTAGATAGAGCTCTGGACCGTTTTCCAGAAGAC  998

seq1  TCTGCCCAGCAGTAAGAACTTAATTGAATTTGGTTGGTGAAATGAATGAA  1050
      |||| |||||||||   |||||||||||||||| | | |||||| ||| |
seq2  TCTG-CCAGCAGTA--GACTTAATTGAATTTGGGTTGGGAAATG-ATG-A  1043

seq1  TGAATGAATGAATAATTTTCCCAACTTGTCTCAATACATTAGGGGTCTGT  1100
      |||||||||| |||| ||||||||||||||||| ||| ||| ||||||||
seq2  TGAATGAATG-ATAA-TTTCCCAACTTGTCTCATTAC-TTA-GGGTCTGT  1089

seq1  AGTTACCT  1108
      ||||||||
seq2  AGTTACCT  1097