BAC Information

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BAC

Clone NameB6Ng01-141A07
Chromosome3 (Build37)
Map Location 87,795,189 - 87,795,916
singlet/doubletsinglet
Overlap geneBcan
Upstream geneCd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes
Downstream geneHapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141A07.g
ACCDH939595
length924
definitionDH939595|Mus musculus domesticus DNA, BAC clone: B6Ng01-141A07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgggcactggaaggggttctaggggaagggctgcctcctcct
cctttccaggaaaggaggtggtttctcttccatctctccatgcccgaaca
aactgagaggagtcctcctgatgaaccgttcccagagtgtatacacctca
tggctgacatcatcattgggcatcaaacaattactgtaatggtggtggtg
gtggtgggaggaggaaggagaagctgggctgattaaatttgctggagtgc
cccagctataattggtacactgaccaagcagtcttttgaacatccctccg
ctaacatctatcatgtcgagcatccctctgctaacagtttttcaagtagg
gtgaaggttgttggtctcaggtgctgagggtgaagagtcctgggcccccg
ggagtcctcatgctttctgcttctccagtttcctctccttcctgggcagc
cctctaaccctggggggacagactcttaagctcagtccttgcccttttgg
ctttaagttccaacctggctgtgggctacagtgcctgaaccttggctggg
cagtgcggtataagggacccacttttggattttccctcctcttttttcta
ccccacagaaccagaaagcatttctttcccaccttctgacagtaggccag
ggggcctctggctctctttacaggtgggctgacacttcagtgacctctaa
ggggttccctcttcctttactacactcactccaaggccagtgggagaaag
gcatagctgaaatgtgcaagctttttgtgatgtaggggtgatattccact
tgagccatgaggagaggtgacttgggaggcctcagccttcccgagaagat
ttccatgggaacttatggttctgggaaagaagatttctttcgagggtgga
aacaatttcttttttctcccaccc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87795189_87795916
seq2: B6Ng01-141A07.g_273_991

seq1  GGGAGGAGGAAGGAGAAGCTGGGCTGATTAAATTTGCTGGAGTGCCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGAAGGAGAAGCTGGGCTGATTAAATTTGCTGGAGTGCCCCAG  50

seq1  CTATAATTGGTACACTGACCAAGCAGTCTTTTGAACATCCCTCCGCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTGGTACACTGACCAAGCAGTCTTTTGAACATCCCTCCGCTAAC  100

seq1  ATCTATCATGTCGAGCATCCCTCTGCTAACAGTTTTTCAAGTAGGGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCATGTCGAGCATCCCTCTGCTAACAGTTTTTCAAGTAGGGTGAA  150

seq1  GGTTGTTGGTCTCAGGTGCTGAGGGTGAAGAGTCCTGGGCCCCCGGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTGGTCTCAGGTGCTGAGGGTGAAGAGTCCTGGGCCCCCGGGAGT  200

seq1  CCTCATGCTTTCTGCTTCTCCAGTTTCCTCTCCTTCCTGGGCAGCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCTTTCTGCTTCTCCAGTTTCCTCTCCTTCCTGGGCAGCCCTCT  250

seq1  AACCCTGGGGGGACAGACTCTTAAGCTCAGTCCTTGCCCTTTTGGCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGGGGGACAGACTCTTAAGCTCAGTCCTTGCCCTTTTGGCTTTA  300

seq1  AGTTCCAACCTGGCTGTGGGCTACAGTGCCTGAACCTTGGCTGGGCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAACCTGGCTGTGGGCTACAGTGCCTGAACCTTGGCTGGGCAGTG  350

seq1  CGGTATAAGGGACCCAC-TTTGGATTTTCCCTCCTC-TTTTTCTACCCCA  398
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  CGGTATAAGGGACCCACTTTTGGATTTTCCCTCCTCTTTTTTCTACCCCA  400

seq1  CAGAACCAGAAAGCATTTCTTTCCCACCTTCTGACAGTAGGCCAGGGGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCAGAAAGCATTTCTTTCCCACCTTCTGACAGTAGGCCAGGGGGC  450

seq1  CTCTGGCTCTCTTTACAGGTGGGCTGACACTTCAGTGACCTCTAAGGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTCTCTTTACAGGTGGGCTGACACTTCAGTGACCTCTAAGGGGT  500

seq1  TCCCTCTTCC-TTACTACACTCACTCCAAGGCCAGTGGGCAGAAAGGCAA  547
      |||||||||| |||||||||||||||||||||||||||| |||||||| |
seq2  TCCCTCTTCCTTTACTACACTCACTCCAAGGCCAGTGGG-AGAAAGGC-A  548

seq1  TAGCTGAAATGGGCAAGCTTTTTGTGATGTAGGGGTGATATTCCACTTGA  597
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAATGTGCAAGCTTTTTGTGATGTAGGGGTGATATTCCACTTGA  598

seq1  GCCATGGAGGAGAGGTGAACCTGGGAGGGCCTCAGCCTTCCCGGAGAAGA  647
      ||||| ||||||||||| || ||||| ||||||||||||||| |||||||
seq2  GCCAT-GAGGAGAGGTG-ACTTGGGA-GGCCTCAGCCTTCCC-GAGAAGA  644

seq1  CTTCCAATGGGAACCTTATGGTTCTGGGACAGAAGATTTCTTTCAGATGG  697
       |||| ||||||| ||||||||||||||| |||||||||||||| || ||
seq2  TTTCC-ATGGGAA-CTTATGGTTCTGGGAAAGAAGATTTCTTTC-GAGGG  691

seq1  TGGAAACCAGTTCCTTTCTTTCTGCCCACCC  728
      ||||||| | |||  || ||||| |||||||
seq2  TGGAAACAATTTC--TTTTTTCT-CCCACCC  719